mRNA_L-elsbetiae_contig11720.1498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11720.1498.1
Unique NamemRNA_L-elsbetiae_contig11720.1498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11720.1498.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.280e-6
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:  470 MMRALDRRSSCFARPEGWLARLGRRVQTPRREKQACPKAAVLR------ADKATVADIELLEMGRRLKSNFEWAVVTTVDMEEEGLFRHIVTYI 733
            MMRA   RSS  AR +GW ARL        R+ +   +A++++          T  +IELLE GR LK NF  AV+  V+++EEGLFRHI++Y+
Sbjct:    1 MMRARHERSSS-ARSKGWRARL--------RKLERYDEASIIKYAMRDFMGGQTPPEIELLEAGR-LKMNFVRAVIAVVEIQEEGLFRHIMSYL 84
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BLAST of mRNA_L-elsbetiae_contig11720.1498.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.980e-6
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 2 
Query:  383 PGLFSRRRTSTQSVTTTGQLLWGRRGWLVMMRALDRRSSCFARPEGWLARLGRRVQTPRREKQACPKAAVLRADKATVADIELLEMGRRLKSNFEWAVVTTVDMEEEGLFRHIVTYI 733
            P   +R R   +  T  GQ  W   GWL+M+RA  +R    ARP+GW  RL        R+ +   +A ++        ++ELLE GR  + NF  AV   V++ EEGLFRHI++++
Sbjct:  192 PRQAARERAVERLRTFPGQRRWHAGGWLIMIRARHQRF--LARPKGWPIRL--------RKLERFNEANIVHK---IPPELELLEAGRS-RMNFVRAVTAVVEINEEGLFRHIISFL 294
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BLAST of mRNA_L-elsbetiae_contig11720.1498.1 vs. uniprot
Match: D8LNC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.020e-5
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 2 
Query:  470 MMRALDRRSSCFARPEGWLARLGRRVQTPRREKQACPKAAVLR------ADKATVADIELLEMGRRLKSNFEWAVVTTVDMEEEGLFRHIVTYI 733
            MMRA  RR    AR +GW ARL        R+     +A +++          T  +IELLE GR LK NF  AV   +++ EEGLFRHI++Y+
Sbjct:    1 MMRA--RRQRSLARSKGWQARL--------RKLDHYDEANIMKYAMRDFMGSQTPPEIELLEAGR-LKMNFVRAVTAAIEIPEEGLFRHIISYL 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11720.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNB4_ECTSI1.280e-642.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FME9_ECTSI4.980e-635.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNC9_ECTSI4.020e-540.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11720contigL-elsbetiae_contig11720:2566..5351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size958
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11720.1498.1prot_L-elsbetiae_contig11720.1498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11720 2813..5129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.0710773-UTR-L-elsbetiae_contig11720:2565..28121622815376.0710773-UTR-L-elsbetiae_contig11720:2565..2812Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11720 2566..2812 +
1691682867.7817144-UTR-L-elsbetiae_contig11720:2565..28121691682867.7817144-UTR-L-elsbetiae_contig11720:2565..2812Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11720 2566..2812 +
1622815376.0994532-UTR-L-elsbetiae_contig11720:5129..53511622815376.0994532-UTR-L-elsbetiae_contig11720:5129..5351Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11720 5130..5351 +
1691682867.834213-UTR-L-elsbetiae_contig11720:5129..53511691682867.834213-UTR-L-elsbetiae_contig11720:5129..5351Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11720 5130..5351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.0804045-CDS-L-elsbetiae_contig11720:2812..28911622815376.0804045-CDS-L-elsbetiae_contig11720:2812..2891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11720 2813..2891 +
1691682867.803266-CDS-L-elsbetiae_contig11720:2812..28911691682867.803266-CDS-L-elsbetiae_contig11720:2812..2891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11720 2813..2891 +
1622815376.08987-CDS-L-elsbetiae_contig11720:4719..51291622815376.08987-CDS-L-elsbetiae_contig11720:4719..5129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11720 4720..5129 +
1691682867.8224514-CDS-L-elsbetiae_contig11720:4719..51291691682867.8224514-CDS-L-elsbetiae_contig11720:4719..5129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11720 4720..5129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11720.1498.1

>prot_L-elsbetiae_contig11720.1498.1 ID=prot_L-elsbetiae_contig11720.1498.1|Name=mRNA_L-elsbetiae_contig11720.1498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MWPLAMLVVALWPVDFVLTLRFGFRYVEKIKGRARTLVEQTREKFPGLFS
RRRTSTQSVTTTGQLLWGRRGWLVMMRALDRRSSCFARPEGWLARLGRRV
QTPRREKQACPKAAVLRADKATVADIELLEMGRRLKSNFEWAVVTTVDME
EEGLFRHIVTYI*
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mRNA from alignment at L-elsbetiae_contig11720:2566..5351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11720.1498.1 ID=mRNA_L-elsbetiae_contig11720.1498.1|Name=mRNA_L-elsbetiae_contig11720.1498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2786bp|location=Sequence derived from alignment at L-elsbetiae_contig11720:2566..5351+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGACTATGTACAAGCACGTTTATTTTCTCTTGCTGATGTTCGCATCGT
ACATACATACAGCTGTAGGAACGCTCGTTTGTGTGTATTTAAGCATGTAG
ACTAGACTATATCTATACCACCAAATGTTAATCCATCTTGTCGCGAACTG
ACACTCGTTGGGCTGCCTAGCTGATACCCTCTGCTCGCCTACTCTGTCCG
CTACTTGCTACCGTTCCTTGCCGGTGACGGGACACCAGATTGCTCTCATG
TGGCCTCTCGCCATGCTTGTCGTTGCCCTCTGGCCTGTCGACTTTGTTCT
AACTCTTCGCTTCGGATTTCGTTACGGTGAGACCAATGTTTATGGTGGAC
CAATCTTGATCTAAATCTTGATTTTCGGGGGGGGGGGGGGGGGGGGTCGA
TCTAAGAAATATTTTTCTATGTACGCTTGATATGGAGCGAAATCTTGGCC
TGTAAGATTTGGAATGGGACCAAAAAGCTTCGTCTTGCCCCGATCTCGGG
ACAAGATCCGTGTGGCTGCGGGCCTAGTCAAATCTTGTCTGGGGGGTGTG
TGTGCGGCCGAACCCAGACCACACGATGAGCGAGTACGACCAGAGTTCTG
AACGTATCGCTCCAAGCAAGGGCTCCCAGCAACCCTTGACTGACGGTGCT
GCTGTTCTGCCCATCAGTTGGGCATGATTGCTGGGGAGGCGAGCGTAAAA
AAACATTTTGAATGACGCACAGCAACAAGAGGTTGGACCGCCTCTATTCA
GCAAAAAATGGAGCGTTTTGGCGGAGGCGTCAGGTCGCCGCCCTTGAGTT
CTCGGTCCACACAGCACGAATTGAAGGCAGTCCGGGCGGGATGTGCTCTC
TGTTTACTTTTCTGTGTCGGTGGAGCGTAGCTTAGTTGTGCGTTCGCTCA
ATCGATAGAGAGAAGGATGTGCGTGTCCACAAGCTGTATGTTACAATTGA
TTTTCAGGTGGTGAACAAACCAGTCTATTTTCACGTGAGGAAAAAGGCAA
AAAATTACCTAGACAAAATGTTCGACACAACGTGCGACGCTTCTGTTTGT
CCATTGAGCGAGCGCACAACTAAACTACGCTCCACCGACACAGAACAGCA
AACAGAGAGCACAGCCCGCCCGGGCTGCCTTCGATCCGTGTTCTGTGGAC
CGAGAACTCGAGAGCGGCGACCTCGCGCCTCTGCAAAAACGCTCCAATTT
TTGCTGAATAGAGGCGGTTTGACTTCTCGTTCTGTGCGTCATTCAAAACG
TATTTTTTACGCTCGCCTCCCCAGCGATCATGTCCAACTGGTGGGCAGAA
CAGCAGCACCGCCAGCCAAGGGTTGCTGGGAGCCCTTGGTTAGAGCGATA
TGTTCAGAACTCAGGTTGCACTTGCTGATTGTGTGGACCGAGGTGTATGT
ATGCCCCCAATCCCCAAACCAAGATCAAGATTTGTTTCCCCATACACACG
TACACATCATAATCTTGAACTTGGGGTGGGTCCACATAAACATTACGGCA
TCACGGCGGGCATCTACCCGCCTGAATACTTGTTGGCCGACCTCGCAAAT
CTTTGCAGGGGAGATATTGAACTTTTCTGATATTTTAGGTTATTTTTCTG
CTCGCTTCGCCAAATATTACGTCACTGTATGGAATACCGTTTGAACCCCA
TACCGATATCGAGCCCTTGCTCGAGTGTGGGGTAGGTTCCATCTATTTTT
AAATATTGTTTATTTAAAAAAAAGGGAAAGTTCGCACCAATCGCTTTCCT
TGTTCGAAGCACGGCACCCCTCTTGATGAATTTTCAGCAGAAACCGGTCT
TCTTTCTCATTCTCGCAGGCTGTATTTCTGGGGTTATGGTGGGCATGGTG
AGAAGTTTCCCCCGCCTTCAAAGATGAAAGTACACTGCTGTAGCAGTACC
GGAGTATACGTAGTACATCTATGTTGGATCCTCGTGCGGAGGGAATCGTT
CTGGCAGGTTAACGTCAAAGCTCACGCGCAGAACGCATGCATCTAGAAAA
CGCCTCCAGTCCTGCTTTGGAAGCACGCTCGAGCCACTGCACGTCATTAG
AGGTTTGTGTCACACGTATACACAGCAGTTCACCGAAAATATCGCGCCTC
CTGTCTTCCTGTCGCTGTCTCGCCCTCGTGTTTCCATCTTGCGTGTTGTT
TCAGTGGAGAAAATCAAGGGAAGGGCCCGAACACTGGTTGAGCAAACCAG
GGAAAAGTTCCCAGGACTGTTTTCAAGGCGTCGTACCAGCACGCAAAGCG
TGACAACAACAGGACAACTATTGTGGGGAAGGCGGGGCTGGCTAGTCATG
ATGCGGGCGCTAGACCGCCGCAGCAGTTGCTTCGCGCGGCCAGAGGGTTG
GCTGGCGAGGCTTGGACGACGCGTTCAGACGCCCCGAAGAGAAAAGCAGG
CGTGTCCTAAGGCGGCGGTGTTGCGGGCCGATAAGGCTACCGTCGCCGAC
ATTGAGCTATTGGAGATGGGAAGAAGACTAAAAAGTAACTTTGAATGGGC
CGTGGTGACTACGGTGGACATGGAGGAGGAAGGACTGTTCCGCCACATCG
TCACGTACATATGAATGCGAGAGCTAATGGGGAGAGGTGATGATCGGGGT
GACGAAAGTAGGAAGCGTTCATTTTGCGGGCTCCAAGAGATGAGGCAGAA
GGCATTGGTTGATAGATTGAGTGGGAGAAGTGAGTCGAGCTTCATATATA
TCGTGGCATGTATTTACGAATTCTTTCAGTTTATAAAAATTCCGAGCGTC
GCTCCCTGTCATTCCTGAGACGGTTTTATTTCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11720:2566..5351+

>mRNA_L-elsbetiae_contig11720.1498.1 ID=mRNA_L-elsbetiae_contig11720.1498.1|Name=mRNA_L-elsbetiae_contig11720.1498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig11720:2566..5351+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCCTCTCGCCATGCTTGTCGTTGCCCTCTGGCCTGTCGACTTTGT
TCTAACTCTTCGCTTCGGATTTCGTTACGATGTGGCCTCTCGCCATGCTT
GTCGTTGCCCTCTGGCCTGTCGACTTTGTTCTAACTCTTCGCTTCGGATT
TCGTTACGTGGAGAAAATCAAGGGAAGGGCCCGAACACTGGTTGAGCAAA
CCAGGGAAAAGTTCCCAGGACTGTTTTCAAGGCGTCGTACCAGCACGCAA
AGCGTGACAACAACAGGACAACTATTGTGGGGAAGGCGGGGCTGGCTAGT
CATGATGCGGGCGCTAGACCGCCGCAGCAGTTGCTTCGCGCGGCCAGAGG
GTTGGCTGGCGAGGCTTGGACGACGCGTTCAGACGCCCCGAAGAGAAAAG
CAGGCGTGTCCTAAGGCGGCGGTGTTGCGGGCCGATAAGGCTACCGTCGC
CGACATTGAGCTATTGGAGATGGGAAGAAGACTAAAAAGTAACTTTGAAT
GGGCCGTGGTGACTACGGTGGACATGGAGGAGGAAGGACTGTTCCGCCAC
ATCGTCACGTACATATGATGGAGAAAATCAAGGGAAGGGCCCGAACACTG
GTTGAGCAAACCAGGGAAAAGTTCCCAGGACTGTTTTCAAGGCGTCGTAC
CAGCACGCAAAGCGTGACAACAACAGGACAACTATTGTGGGGAAGGCGGG
GCTGGCTAGTCATGATGCGGGCGCTAGACCGCCGCAGCAGTTGCTTCGCG
CGGCCAGAGGGTTGGCTGGCGAGGCTTGGACGACGCGTTCAGACGCCCCG
AAGAGAAAAGCAGGCGTGTCCTAAGGCGGCGGTGTTGCGGGCCGATAAGG
CTACCGTCGCCGACATTGAGCTATTGGAGATGGGAAGAAGACTAAAAAGT
AACTTTGAATGGGCCGTGGTGACTACGGTGGACATGGAGGAGGAAGGACT
GTTCCGCCACATCGTCACGTACATATGA
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