mRNA_L-elsbetiae_contig11714.1492.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11714.1492.1
Unique NamemRNA_L-elsbetiae_contig11714.1492.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11714.1492.1 vs. uniprot
Match: A0A6H5JH29_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH29_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.740e-21
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 DEDGRITVRVLDVRGQFYPLRVHPETTVRELKQNLVNATGVEYGRQRIIHGGKV 162
            D+DGR+TVRVLDVRGQFYPLRV PET+VRELK  LV+A GVE  RQRIIHGGKV
Sbjct:   78 DDDGRMTVRVLDVRGQFYPLRVTPETSVRELKLMLVDAAGVEVPRQRIIHGGKV 131
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BLAST of mRNA_L-elsbetiae_contig11714.1492.1 vs. uniprot
Match: D8LJ71_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ71_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.050e-19
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    7 DGRITVRVLDVRGQFYPLRVHPETTVRELKQNLVNATGVEYGRQRIIHGGKVSSSSSMVG 186
            DGR+TVRVLDVRGQFYPLRV PET+VRELK  LV+A GVE  RQRIIHGGK+ S +  +G
Sbjct:   81 DGRMTVRVLDVRGQFYPLRVTPETSVRELKLMLVDAAGVEVPRQRIIHGGKMLSDADTLG 140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11714.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH29_9PHAE2.740e-2181.48Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D8LJ71_ECTSI9.050e-1973.33Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11714contigL-elsbetiae_contig11714:5703..5888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D8LJ71
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin homologues
EggNOG OGs2E9AU@1,2SFPK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-02_004990.1
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.5052671-CDS-L-elsbetiae_contig11714:5702..58881622815375.5052671-CDS-L-elsbetiae_contig11714:5702..5888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11714 5703..5888 +
1691682867.4150813-CDS-L-elsbetiae_contig11714:5702..58881691682867.4150813-CDS-L-elsbetiae_contig11714:5702..5888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11714 5703..5888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11714.1492.1prot_L-elsbetiae_contig11714.1492.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11714 5703..5888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11714.1492.1

>prot_L-elsbetiae_contig11714.1492.1 ID=prot_L-elsbetiae_contig11714.1492.1|Name=mRNA_L-elsbetiae_contig11714.1492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
DEDGRITVRVLDVRGQFYPLRVHPETTVRELKQNLVNATGVEYGRQRIIH
GGKVSSSSSMVG
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mRNA from alignment at L-elsbetiae_contig11714:5703..5888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11714.1492.1 ID=mRNA_L-elsbetiae_contig11714.1492.1|Name=mRNA_L-elsbetiae_contig11714.1492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig11714:5703..5888+ (Laminarionema elsbetiae ELsaHSoW15)
GATGAGGACGGAAGGATAACAGTCAGAGTACTGGACGTGCGCGGGCAATT
TTATCCACTGCGCGTGCACCCTGAGACCACTGTCCGGGAGCTGAAGCAGA
ACTTGGTGAATGCCACAGGTGTGGAGTATGGAAGACAACGCATCATCCAC
GGCGGCAAAGTGAGCAGTTCTTCGTCTATGGTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11714:5703..5888+

>mRNA_L-elsbetiae_contig11714.1492.1 ID=mRNA_L-elsbetiae_contig11714.1492.1|Name=mRNA_L-elsbetiae_contig11714.1492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig11714:5703..5888+ (Laminarionema elsbetiae ELsaHSoW15)
GATGAGGACGGAAGGATAACAGTCAGAGTACTGGACGTGCGCGGGCAATT
TTATCCACTGCGCGTGCACCCTGAGACCACTGTCCGGGAGCTGAAGCAGA
ACTTGGTGAATGCCACAGGTGTGGAGTATGGAAGACAACGCATCATCCAC
GGCGGCAAAGTGAGCAGTTCTTCGTCTATGGTGGGGGATGAGGACGGAAG
GATAACAGTCAGAGTACTGGACGTGCGCGGGCAATTTTATCCACTGCGCG
TGCACCCTGAGACCACTGTCCGGGAGCTGAAGCAGAACTTGGTGAATGCC
ACAGGTGTGGAGTATGGAAGACAACGCATCATCCACGGCGGCAAAGTGAG
CAGTTCTTCGTCTATGGTGGGG
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