mRNA_L-elsbetiae_contig11710.1490.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11710.1490.1
Unique NamemRNA_L-elsbetiae_contig11710.1490.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: D7G3E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E7_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.140e-33
Identity = 107/141 (75.89%), Postives = 113/141 (80.14%), Query Frame = 1 
Query:   46 RKILRGTKIVRSIASTPNRGGGGNGSIGGGWERSPLQTGEIGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNKNRSSIVARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQIP 468
            R++ R TK+VRSIASTP RG G  G   GGWE+SPL       +   XXXXXXXXXXXXXXXXXXXXXXXXXXXX     +RSSIVA V  E LCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQIP
Sbjct:  755 RQVRRKTKVVRSIASTPKRGVGSGGIAAGGWEKSPL-------TDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHPRTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQIP 888
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A835Z834_9STRA (A distinct subfamily of CDD/CDA-like deaminases-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z834_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.880e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  301 VARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 462
            V +VQA+    NPLKPCGAC EWL+KIAEVNPDFKV+TFTD+ C GVYIE V  
Sbjct:  338 VQKVQAQHAAVNPLKPCGACTEWLRKIAEVNPDFKVLTFTDTTCEGVYIESVTS 391
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7S2V781_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V781_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.030e-12
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  280 NKNRSSIVARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVY 444
            NK RS +V +   +    NPLKPCGAC EWLKKIAE NP F+V+TFTD+ C G+Y
Sbjct:   68 NKKRSFVVVQSSRDL---NPLKPCGACNEWLKKIAECNPYFQVVTFTDAACNGLY 119
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7S3M075_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M075_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.140e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  334 NPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDV 456
            NPLKPCGAC EWLKKIAEVNP+ +VITFTD+ C GV+IE +
Sbjct:  110 NPLKPCGACNEWLKKIAEVNPNLRVITFTDAGCRGVHIEQI 150
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7S2WW95_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW95_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.610e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:  307 RVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 462
            ++Q E    NPLKPCGAC EWLKKIAEVNP F+++TFTD+ C G YIE V +
Sbjct:  573 KLQVEMEDMNPLKPCGACSEWLKKIAEVNPAFRILTFTDANCTGTYIESVME 624
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7S4HMH9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HMH9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.460e-12
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  277 KNKNRSSIVARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYI 447
            + K R+ +V   Q      NPLKPCGAC EWLKKIAE NP FKV+TFTD+ C GVY+
Sbjct:   86 RKKKRTVVVHSAQD----INPLKPCGACNEWLKKIAESNPYFKVVTFTDADCNGVYV 138
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7S0FLT8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FLT8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.860e-12
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  334 NPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 462
            NPL PCGAC EWLKKIAE NP FKV+TFTD+ C GVYI  V +
Sbjct:   76 NPLAPCGACNEWLKKIAESNPYFKVLTFTDADCNGVYITPVIE 118
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: W7U454_9STRA (Cytidine deaminase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U454_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.800e-11
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:  295 SIVARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVA 459
            ++  RV+A+ L  NPLKPCGACMEWLKKIAE NP+F+V TFTD  C G+Y E V+
Sbjct:  869 AMTIRVEADDL--NPLKPCGACMEWLKKIAEKNPEFRVATFTDEACRGIYTEFVS 921
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7S2DWK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DWK1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.720e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  277 KNKNRSSIVARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGV 441
            + K + + V     E L  NPL+PCGAC EWLKKIAE++ DFKV+TFTD+ C GV
Sbjct:   58 RRKQKRTFVVHSSTEDL--NPLRPCGACNEWLKKIAEISTDFKVLTFTDADCNGV 110
[Close]
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Match: A0A7R9UGC7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGC7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.260e-11
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  310 VQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDV 456
            V  +A   NPLKPCGACMEWL+KIAEVNP F V+TFTD  C GVY E V
Sbjct:  317 VLTDASDLNPLKPCGACMEWLRKIAEVNPQFAVLTFTDRDCKGVYREHV 365
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11710.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E7_ECTSI2.140e-3375.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z834_9STRA4.880e-1570.37A distinct subfamily of CDD/CDA-like deaminases-do... [more]
A0A7S2V781_9STRA3.030e-1260.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3M075_9STRA3.140e-1275.61Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2WW95_9STRA4.610e-1263.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4HMH9_9STRA6.460e-1259.65Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0FLT8_9STRA8.860e-1272.09Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
W7U454_9STRA1.800e-1163.64Cytidine deaminase-like protein n=2 Tax=Monodopsid... [more]
A0A7S2DWK1_9STRA4.720e-1156.36Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7R9UGC7_9STRA5.260e-1169.39Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11710contigL-elsbetiae_contig11710:2924..5218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.5e-32
Seed eggNOG ortholog2880.D7G3E7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.A distinct subfamily of CDD/CDA-like deaminases
EggNOG OGs293GQ@1,2RADN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006560.2
Exons2
Model size1282
Cds size471
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11710.1490.1prot_L-elsbetiae_contig11710.1490.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11710 2924..4409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.771668-CDS-L-elsbetiae_contig11710:2923..29741622815373.771668-CDS-L-elsbetiae_contig11710:2923..2974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 2924..2974 +
1691682867.3200238-CDS-L-elsbetiae_contig11710:2923..29741691682867.3200238-CDS-L-elsbetiae_contig11710:2923..2974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 2924..2974 +
1622815373.7857223-CDS-L-elsbetiae_contig11710:3989..44091622815373.7857223-CDS-L-elsbetiae_contig11710:3989..4409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 3990..4409 +
1691682867.3325315-CDS-L-elsbetiae_contig11710:3989..44091691682867.3325315-CDS-L-elsbetiae_contig11710:3989..4409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 3990..4409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.7957323-UTR-L-elsbetiae_contig11710:4409..52181622815373.7957323-UTR-L-elsbetiae_contig11710:4409..5218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11710 4410..5218 +
1691682867.3475597-UTR-L-elsbetiae_contig11710:4409..52181691682867.3475597-UTR-L-elsbetiae_contig11710:4409..5218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11710 4410..5218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11710.1490.1

>prot_L-elsbetiae_contig11710.1490.1 ID=prot_L-elsbetiae_contig11710.1490.1|Name=mRNA_L-elsbetiae_contig11710.1490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
VGQRDLFLDREDLSRRKILRGTKIVRSIASTPNRGGGGNGSIGGGWERSP
LQTGEIGSSAGGGGSRGGGSGSGGGVYYSINNGNNNNNGGSSKNKNRSSI
VARVQAEALCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIE
DVAQIP*
back to top

mRNA from alignment at L-elsbetiae_contig11710:2924..5218+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11710.1490.1 ID=mRNA_L-elsbetiae_contig11710.1490.1|Name=mRNA_L-elsbetiae_contig11710.1490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2295bp|location=Sequence derived from alignment at L-elsbetiae_contig11710:2924..5218+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGCCAGCGGGACTTGTTCCTCGACCGCGAAGATCTTTCTAGGAGGAA
GGTAAGGAGAAATTGGTTGCTGTACCGGTTGCACCTGAGGGGCGGCGAGG
GGGAGAGTGTACCTTGGCTCTTACATAAGAGGTTTTGATTTTGCGATTTA
AAATAACCCTTCCTCTCTTTGATGTATGTAGGAACGTACAGAGTGTGGAT
GACGAATCAAGATCAGGAAGAGAGAGAAGAGAGATCTGGGAGTGTCTTTG
GTGCATGCCAGAAGACACAGACAGGTGCTCTCTGTCTATGAGGAGCAGTA
CATAGTGTCTTGCGGAGGTGCTATGTATGTATATACGTAAATGTCCAGGA
ACGGGTGATGCAAATAAACAGCACGTATCATACTGGTGCCGGGGCGCAGG
CTCTCGTGATGACAACCACAGCACCCGCCCGTGATCGGCGGAAAGTTTAT
CGGCTGGCGGTTGAGAGACACTGCTGGTGTCGTCACCGTTTTGCCACACT
CCTTCCACAGCACAAAACAAATGAAATGGAGAAAATGTGATTATCCCCCC
CCCCCTTGGCTGTCACTCTTGTTTTTTTTCTTTGGAGGCATTATTGTAGA
GAGTTTCGGAAGTGTCAAATGGGCGTTTTGATGTGAAGGGTGATGCCAAG
TTCGACAAGAGAAATATGGATACAGGGGGCGGGCCGGGTTCGTACACATG
CACGCCAGGCTTTCTCCTCATCCGCTCTAACGATTTTTCCCATACTCGGG
GCGCATGTATGACCTCGAGGCCCACATGCGTTCACCGGCGCGATTTCACG
TCCGTCGGTTGCGTGAGCGGCGACAAAACTTGAGAACGCCTTCTGGAGAA
CAAAAATAGAGAACGCGTTTGGCCCAAAAACGCGGCGGGTTTTTATCATT
TGGAAACTTTTCGACTGGCCAGGAGGAGACTTCTGACCTCTACGAGGTGC
CCAGAATACTTCGTTGTGCCCAATATACATAATCGGCTGTGTGCTTTAAG
AGCTTTCCATCGACGCCCCGCGCGCTCTGAACGACGTGTTTTATGCTGTC
GTCTTTCCGGGCTCAGATTTTACGAGGTACGAAAATCGTTCGAAGCATCG
CTTCGACGCCGAATCGGGGCGGTGGTGGTAATGGCAGCATCGGCGGGGGC
TGGGAAAGGAGCCCCCTTCAAACCGGCGAGATCGGCAGCAGTGCCGGCGG
GGGCGGTAGTAGAGGCGGCGGCAGCGGTAGCGGCGGTGGCGTCTACTACA
GCATCAACAACGGCAACAACAATAACAACGGTGGAAGCAGCAAGAACAAG
AACAGGAGCAGCATCGTCGCACGCGTGCAGGCGGAGGCCCTGTGCTCCAA
CCCCCTCAAGCCCTGCGGCGCGTGTATGGAGTGGCTCAAGAAGATCGCCG
AGGTGAATCCCGATTTCAAGGTCATCACTTTCACGGACTCTCGCTGCGGA
GGCGTCTACATCGAGGACGTTGCGCAGATACCGTAGCGGCTACGGCTGTG
GTCCCTTTTTAATCCTCACCCGCTGAATTGCTCCCCCGCTGTGGCGCCCC
CAACCGCGCTTTCCGAAAGAAACGTGCGATCAACGATCAATAGCCGAGGC
CAGCGATTTGTTTTCTTGCGGAATAGTCTTTCAGATTGCTGCGTTTTTTT
TCCCTGTTTTTTTTTCCGGCTCTGTATCGTAGGTGCTGTGTTTTTCCTCT
TCGTGTTTGAGTTATAAATGTATAATTGCGCTGCACAAGCACTGCGCCTC
CCAATTTCAATCTCTCACTTGAAAACGAAGAGACGTGAAGAAGTAATAAG
TAGTGTGGTTGCAGCAGCATCACCGGGCGCGTGTCGTACACGATTTGTGT
AGCCACGAATCATGTCCAATAGTGGCCACATCAAACAAACGCGAGAAGAC
GCACATTTGCGAGAAGGTAGGAGTATTACTAGTGGAGGCTTGATCCAGCA
ACACCGTCTGCCAGCTGCTGCCCCATCGCAGTGAGACTGTTTAGTAAGTG
ACCGCGGTGGGAGTGGCGGCTGCTGTAGTCTTGTAAGTGCCGCGGTGGAA
GTGGCTGAAGTGTGGCTACGCGGTTTTAGTAGCGTACATACGGAGGCTCG
ATCCAGCAATATCGTCCACCAGCTGCTGCTCCATCGCCGTGAGGCTGTCT
AGTAAGTGCCATCGCGATGAGTGGCTACTGCTGTGCAGTGTACCTGTGCC
ATGTTCGGCATATGTTCGTGGTTGAGCTTCAGAGACCAGAGGATGTTGTT
AACCGCATATATTAGCCCGTAGAGGAGACATGAGAGAGAGGGGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11710:2924..5218+

>mRNA_L-elsbetiae_contig11710.1490.1 ID=mRNA_L-elsbetiae_contig11710.1490.1|Name=mRNA_L-elsbetiae_contig11710.1490.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig11710:2924..5218+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGCCAGCGGGACTTGTTCCTCGACCGCGAAGATCTTTCTAGGAGGAA
GGTGGGCCAGCGGGACTTGTTCCTCGACCGCGAAGATCTTTCTAGGAGGA
AGATTTTACGAGGTACGAAAATCGTTCGAAGCATCGCTTCGACGCCGAAT
CGGGGCGGTGGTGGTAATGGCAGCATCGGCGGGGGCTGGGAAAGGAGCCC
CCTTCAAACCGGCGAGATCGGCAGCAGTGCCGGCGGGGGCGGTAGTAGAG
GCGGCGGCAGCGGTAGCGGCGGTGGCGTCTACTACAGCATCAACAACGGC
AACAACAATAACAACGGTGGAAGCAGCAAGAACAAGAACAGGAGCAGCAT
CGTCGCACGCGTGCAGGCGGAGGCCCTGTGCTCCAACCCCCTCAAGCCCT
GCGGCGCGTGTATGGAGTGGCTCAAGAAGATCGCCGAGGTGAATCCCGAT
TTCAAGGTCATCACTTTCACGGACTCTCGCTGCGGAGGCGTCTACATCGA
GGACGTTGCGCAGATACCGTAGATTTTACGAGGTACGAAAATCGTTCGAA
GCATCGCTTCGACGCCGAATCGGGGCGGTGGTGGTAATGGCAGCATCGGC
GGGGGCTGGGAAAGGAGCCCCCTTCAAACCGGCGAGATCGGCAGCAGTGC
CGGCGGGGGCGGTAGTAGAGGCGGCGGCAGCGGTAGCGGCGGTGGCGTCT
ACTACAGCATCAACAACGGCAACAACAATAACAACGGTGGAAGCAGCAAG
AACAAGAACAGGAGCAGCATCGTCGCACGCGTGCAGGCGGAGGCCCTGTG
CTCCAACCCCCTCAAGCCCTGCGGCGCGTGTATGGAGTGGCTCAAGAAGA
TCGCCGAGGTGAATCCCGATTTCAAGGTCATCACTTTCACGGACTCTCGC
TGCGGAGGCGTCTACATCGAGGACGTTGCGCAGATACCGTAG
back to top