mRNA_L-elsbetiae_contig11710.1489.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11710.1489.1
Unique NamemRNA_L-elsbetiae_contig11710.1489.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11710.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11710contigL-elsbetiae_contig11710:1540..2901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006560.1
Exons2
Model size581
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.723363-CDS-L-elsbetiae_contig11710:1539..15691622815373.723363-CDS-L-elsbetiae_contig11710:1539..1569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 1540..1569 +
1691682867.2983384-CDS-L-elsbetiae_contig11710:1539..15691691682867.2983384-CDS-L-elsbetiae_contig11710:1539..1569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 1540..1569 +
1622815373.733601-CDS-L-elsbetiae_contig11710:2350..28991622815373.733601-CDS-L-elsbetiae_contig11710:2350..2899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 2351..2899 +
1691682867.309781-CDS-L-elsbetiae_contig11710:2350..28991691682867.309781-CDS-L-elsbetiae_contig11710:2350..2899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11710 2351..2899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11710.1489.1prot_L-elsbetiae_contig11710.1489.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11710 1540..2899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11710.1489.1

>prot_L-elsbetiae_contig11710.1489.1 ID=prot_L-elsbetiae_contig11710.1489.1|Name=mRNA_L-elsbetiae_contig11710.1489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
DEKRLEGVRQVLLAVTAGKSASIPSAAAPAAPAPAGAAAAGRGAAAAATS
DFVFRSNSAGLANTNNGRGSESGSSSNMADSRRNSEDGVGWPSQHQQQQQ
SPRQRKQRGVTLLDGRGGPRLRSESCGDELLASGRVTNEEAHGSSYRCSG
GGGDEEAKAGELEVLETAIGGKTPSGRSHVSRSQSLDLGTAAA
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mRNA from alignment at L-elsbetiae_contig11710:1540..2901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11710.1489.1 ID=mRNA_L-elsbetiae_contig11710.1489.1|Name=mRNA_L-elsbetiae_contig11710.1489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig11710:1540..2901+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAGAAGCGGCTAGAGGGAGTGCGCCAGGTGGGGTGAAGTGGAGGGGG
GGGGGGGGGTGGCTTAGGGTTTTCCTCGTTCGAAGGGTTGGCCAGTGGTT
TGGTCATCATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCT
CTTGACGGGATGATGGCTACTTGTGCGCATGCTTGTTAAAGGAGCGGTAA
AGTGGTTGGAATAGATATATAGCACAGATCGTTTCGAGGAAGTTTTGATG
TGCAGGGCGGCTTGACCGACCACGAACGCGCGTATGTATGTACATGGCTG
AACTCCTTTGGGCTGAAACCGGCGATGATTCAATTCTGCTTTCGGTCAAC
GTTTCTCTGGGAACCGGTAGACCTCCATCATAAAAAACAAGCAAAATGGC
TGATCGGCCCGAAGATCTTCCTCCCTCAGCAGTCCTACAATTCCAATTTC
ACCAATACTGATGTGTGCGACTCGAGGTACTCTTGCTGTCCGTATGTGGG
AGCCATGGCCACCAACCCGCCTGCTCAGGCGTGCGGTTCCCTTTACACCG
GCATATTTTGGGTACCGCTTCGGTTCCTGTGACTAAAGCCAAGCGGCGTG
TTTTTCTGCCTTAACCTTGACGGCTCTTTTCGACCACGTTTTGCCGGCCC
TGCGCATCCGTCACCCCCCACATCCCTGTTTTTGTGGGAGCTGAAAGCCT
CGCAACCCTCTGGCGCTTGCCCCCAGCGTTCTCCTTTCCTTCTTCGTCTC
GGGGCTCCTTTTTCCCTCACCGGACACCTGCCAACCCGTTTCTCGCTGCT
TGTACACGAAGGTGCTGCTAGCGGTGACTGCCGGAAAAAGTGCTTCGATT
CCCTCGGCAGCAGCGCCAGCAGCGCCTGCACCAGCAGGAGCAGCAGCCGC
AGGGCGGGGAGCAGCAGCAGCAGCAACGTCCGATTTTGTTTTTCGGTCGA
ACTCCGCGGGCCTGGCAAACACGAACAACGGCAGGGGCAGTGAAAGCGGC
AGCAGCAGCAATATGGCGGATAGCCGCCGCAACAGCGAAGACGGTGTTGG
CTGGCCCTCGCAGCACCAGCAACAACAGCAGTCTCCGCGACAGCGTAAGC
AAAGAGGAGTGACCCTCCTCGACGGTCGGGGGGGCCCGCGCTTGCGGTCG
GAGTCCTGCGGGGACGAGCTCCTCGCGTCTGGCCGGGTCACAAACGAGGA
GGCCCATGGCTCAAGCTACCGTTGCAGCGGCGGCGGTGGCGATGAGGAGG
CAAAGGCTGGAGAATTGGAGGTGTTGGAAACGGCAATCGGTGGGAAAACA
CCATCAGGACGCAGCCACGTGTCTCGCTCACAGAGTCTAGATCTGGGAAC
GGCGGCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11710:1540..2901+

>mRNA_L-elsbetiae_contig11710.1489.1 ID=mRNA_L-elsbetiae_contig11710.1489.1|Name=mRNA_L-elsbetiae_contig11710.1489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig11710:1540..2901+ (Laminarionema elsbetiae ELsaHSoW15)
GACGAGAAGCGGCTAGAGGGAGTGCGCCAGGACGAGAAGCGGCTAGAGGG
AGTGCGCCAGGTGCTGCTAGCGGTGACTGCCGGAAAAAGTGCTTCGATTC
CCTCGGCAGCAGCGCCAGCAGCGCCTGCACCAGCAGGAGCAGCAGCCGCA
GGGCGGGGAGCAGCAGCAGCAGCAACGTCCGATTTTGTTTTTCGGTCGAA
CTCCGCGGGCCTGGCAAACACGAACAACGGCAGGGGCAGTGAAAGCGGCA
GCAGCAGCAATATGGCGGATAGCCGCCGCAACAGCGAAGACGGTGTTGGC
TGGCCCTCGCAGCACCAGCAACAACAGCAGTCTCCGCGACAGCGTAAGCA
AAGAGGAGTGACCCTCCTCGACGGTCGGGGGGGCCCGCGCTTGCGGTCGG
AGTCCTGCGGGGACGAGCTCCTCGCGTCTGGCCGGGTCACAAACGAGGAG
GCCCATGGCTCAAGCTACCGTTGCAGCGGCGGCGGTGGCGATGAGGAGGC
AAAGGCTGGAGAATTGGAGGTGTTGGAAACGGCAATCGGTGGGAAAACAC
CATCAGGACGCAGCCACGTGTCTCGCTCACAGAGTCTAGATCTGGGAACG
GCGGCGGCGGTGCTGCTAGCGGTGACTGCCGGAAAAAGTGCTTCGATTCC
CTCGGCAGCAGCGCCAGCAGCGCCTGCACCAGCAGGAGCAGCAGCCGCAG
GGCGGGGAGCAGCAGCAGCAGCAACGTCCGATTTTGTTTTTCGGTCGAAC
TCCGCGGGCCTGGCAAACACGAACAACGGCAGGGGCAGTGAAAGCGGCAG
CAGCAGCAATATGGCGGATAGCCGCCGCAACAGCGAAGACGGTGTTGGCT
GGCCCTCGCAGCACCAGCAACAACAGCAGTCTCCGCGACAGCGTAAGCAA
AGAGGAGTGACCCTCCTCGACGGTCGGGGGGGCCCGCGCTTGCGGTCGGA
GTCCTGCGGGGACGAGCTCCTCGCGTCTGGCCGGGTCACAAACGAGGAGG
CCCATGGCTCAAGCTACCGTTGCAGCGGCGGCGGTGGCGATGAGGAGGCA
AAGGCTGGAGAATTGGAGGTGTTGGAAACGGCAATCGGTGGGAAAACACC
ATCAGGACGCAGCCACGTGTCTCGCTCACAGAGTCTAGATCTGGGAACGG
CGGCGGCG
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