mRNA_L-elsbetiae_contig1171.1485.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1171.1485.1
Unique NamemRNA_L-elsbetiae_contig1171.1485.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1171.1485.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 1.330e-124
Identity = 179/233 (76.82%), Postives = 204/233 (87.55%), Query Frame = 3 
Query:   45 LLWLRKTSSFVTLPGITAPARQGTARAMGSAVPMPPSPDELRARAAAIREELKELEANASVNRRPNAELAEPKRVVPLPESLLDSCWKVVLEIRGVKSDKNRIPVRLVFCCKFAEDDFILEVEGDHRFVKRGYVWEPDRNEKDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTVKGDDGKTRYKFSEGAVTIKEVINKSFWGIFNTAGLLAQFKVVGTWDAFPIDALPDTPSS 743
            +LWL  T SF+ +P I A  R  T    G    +PPSP+ LRARAAAIREELKELEANA+  RRPNAELAEPKRVVP PE+LLDSCWK+V+++RGVKSDKNR+PVRLVFCCKFAE+DFILEVE D+RFVKRGYVWEPDRN+ +DKEFITFIA+VEGLSAVPDGRI+MN +ID ++GDDGKTRYKFSEGAVTIKEVI+KSFWG+FNTAGLLA+FKVVGTWDA PIDALP+  SS
Sbjct:   10 VLWLTPTHSFMAVPPIAARKRVTTQLHSGEDGRIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALPEKQSS 242
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BLAST of mRNA_L-elsbetiae_contig1171.1485.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.150e-23
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 3 
Query:  378 KFAEDDFILEVEGDHRFVKRGYVWEPDRNEKDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTVKGDDGKTRYKFSEGAVTIKEVINKSFWGIFNTAGLLAQFKVVGTWDAFPIDALP 728
            +F+ DD IL V      + RGY+W PDR+    + +I F   V+GLSAVPDG++Y+NA +D    DD    YK S+G +TIKEV N+  +G+F+ AG+LA+FKVVG + A P+  +P
Sbjct:   71 RFSSDDNILLVSAGTPAITRGYIWAPDRDAN--RTYIAFDIGVKGLSAVPDGKLYLNARVDQ---DDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1171.1485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE1.330e-12476.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA1.150e-2346.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1171contigL-elsbetiae_contig1171:8295..11599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001100.1
Exons4
Model size861
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1171.1485.1prot_L-elsbetiae_contig1171.1485.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1171 8309..11502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.394863-UTR-L-elsbetiae_contig1171:8294..83081622815373.394863-UTR-L-elsbetiae_contig1171:8294..8308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1171 8295..8308 +
1691682867.0769112-UTR-L-elsbetiae_contig1171:8294..83081691682867.0769112-UTR-L-elsbetiae_contig1171:8294..8308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1171 8295..8308 +
1622815373.4577165-UTR-L-elsbetiae_contig1171:11502..115991622815373.4577165-UTR-L-elsbetiae_contig1171:11502..11599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1171 11503..11599 +
1691682867.1248713-UTR-L-elsbetiae_contig1171:11502..115991691682867.1248713-UTR-L-elsbetiae_contig1171:11502..11599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1171 11503..11599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.4108486-CDS-L-elsbetiae_contig1171:8308..85601622815373.4108486-CDS-L-elsbetiae_contig1171:8308..8560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 8309..8560 +
1691682867.0888488-CDS-L-elsbetiae_contig1171:8308..85601691682867.0888488-CDS-L-elsbetiae_contig1171:8308..8560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 8309..8560 +
1622815373.4213595-CDS-L-elsbetiae_contig1171:9579..97491622815373.4213595-CDS-L-elsbetiae_contig1171:9579..9749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 9580..9749 +
1691682867.097552-CDS-L-elsbetiae_contig1171:9579..97491691682867.097552-CDS-L-elsbetiae_contig1171:9579..9749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 9580..9749 +
1622815373.4331703-CDS-L-elsbetiae_contig1171:10456..105901622815373.4331703-CDS-L-elsbetiae_contig1171:10456..10590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 10457..10590 +
1691682867.1058109-CDS-L-elsbetiae_contig1171:10456..105901691682867.1058109-CDS-L-elsbetiae_contig1171:10456..10590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 10457..10590 +
1622815373.4456584-CDS-L-elsbetiae_contig1171:11308..115021622815373.4456584-CDS-L-elsbetiae_contig1171:11308..11502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 11309..11502 +
1691682867.1137853-CDS-L-elsbetiae_contig1171:11308..115021691682867.1137853-CDS-L-elsbetiae_contig1171:11308..11502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1171 11309..11502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1171.1485.1

>prot_L-elsbetiae_contig1171.1485.1 ID=prot_L-elsbetiae_contig1171.1485.1|Name=mRNA_L-elsbetiae_contig1171.1485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
MRVAWVTWSTLLWLRKTSSFVTLPGITAPARQGTARAMGSAVPMPPSPDE
LRARAAAIREELKELEANASVNRRPNAELAEPKRVVPLPESLLDSCWKVV
LEIRGVKSDKNRIPVRLVFCCKFAEDDFILEVEGDHRFVKRGYVWEPDRN
EKDDKEFITFIAQVEGLSAVPDGRIYMNAYIDTVKGDDGKTRYKFSEGAV
TIKEVINKSFWGIFNTAGLLAQFKVVGTWDAFPIDALPDTPSSSKPSSE*
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mRNA from alignment at L-elsbetiae_contig1171:8295..11599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1171.1485.1 ID=mRNA_L-elsbetiae_contig1171.1485.1|Name=mRNA_L-elsbetiae_contig1171.1485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3305bp|location=Sequence derived from alignment at L-elsbetiae_contig1171:8295..11599+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCCTCTGCGACAATGAGGGTGGCTTGGGTCACATGGTCAACGCTACTA
TGGCTAAGGAAGACCTCCTCCTTCGTCACGTTGCCTGGTATCACTGCGCC
TGCTCGGCAAGGTACGGCCAGAGCGATGGGTTCAGCAGTCCCGATGCCGC
CATCTCCCGATGAGCTAAGAGCCCGGGCTGCGGCGATTCGCGAGGAGCTC
AAGGAGTTGGAGGCCAATGCTTCCGTAAATAGGCGTCCCAACGCTGAGCT
GGCTGAACCAAAACGGGTGAGAGTCAAAACTACACAACAGGAAGTAGTAT
CCAGATGTAATAGATACATACAACCTCAGCGCGCAGACCTGACTGCTGAC
GAACGTCGCAATGACATCGCCCGTGGTTTTATGATACCTAACATAGGCTG
GTAGAACTTTTCCTCGCGTGCTACGCAAGGCAAAGAAAGTGCTCGTGAGC
GGGATGGAATGGTTCACCACCCACGGTATGTTTTCAAAATGCAGTTGTGG
GAACACATTCTTGTTCATTCTCAGTAGTGAGAGAGAGACAGGACACAAAA
TACGCATGTACAACAGCAGGTTGCCCTTATCTAGGTCCACAGCAGTGGTA
TGTATGTATTGTACAGGCAGAAGAAACACATGTGTATGTACTAGTATTGG
GGCAGTAACTCTATCCCCAATAGTGGCTTTTTTCCACTGTTGACACCCCC
GAATAGTGGTACTTTGGCCACTAGTCTATTGGGGAGAAAAAACTTTGATC
TGCACACCACCAGCAGCCTGTCCTTCGCTCCCAAAGGGTTGTTTAGGAGT
TTACACAGATCTGGTAGGTACGTGTGGCACCCACTGCTGTGCGTGTGCGT
GTTGCGCACACGCGTTCGCGTGTAGGGCCCGTAGATGCAATTGCCGCTTT
AGGGGGGTGAGATTCCCGAAATGCCACTTCGCCCTATATAAGGGTAACCT
GCCAAATCTATCGGCAGTTCCACTATTCAAGTTGCCGCCACTATACAGGG
CCACCTACTGTACATACACAGGGTACGGGTCGGATTTTGAACTCAAAATA
TGCGCGAAAAAAGCGTCGTCCGTGCTCTCTTTTGGCGGTGTTTCGTTGGT
TCACGCTTCTTATCGATTCCTCGTTGTTCAAAGGAAACGCTACGGTTGAA
ACTGCAGTCGTGTCCGGGTACACAGAGGTAAATAGTATTATTTGCCTACC
CGGTGGCACGACCGCACTCCTCTCGCGTTGCCGCGTAGAAAATCCACCAA
AAGAGTACTCAACCCCACCCCTCCCGATCAATTAGGTGGTGCCGCTTCCC
GAGTCGTTGCTGGATAGCTGCTGGAAGGTTGTGCTTGAGATTCGCGGCGT
CAAGAGCGACAAGAACCGGATACCCGTGCGGTTGGTCTTCTGCTGCAAGT
TTGCCGAGGACGACTTCATCTTGGAAGTGGAGGGAGACCATCGTTTCGTC
AAGCGGTAAGCTTCAGCACGTGCCAACATATGTATGGATGTAGGTCGCCT
CCTCTACAAGCTACAAACCGTTTCGGCGGCACCAGCAGCAATCATTGCCG
CCAGCATCACAGCCAAGTGCCAACGTTGCAAAAAAAAAATCACCACCAGT
AATTTCCCATACAATGGCCGGAACCATTGTACATATACAACACATGAGAA
AGGTCGGTTGGCACTACTGTGACGGTTTCCCAAAAAAGGCTTGCAGTTTT
TGCGCCTAGAAAGTGAGTCGGTGGTACATGTGGCGAATGTTTTCCCCCAC
AACATGAAGAAGGTTCGGAAACTTCTGTGTATGTTGAGTTCAGGAGGAGC
ATCTTTTAGAGCATTCGGTTATCAAGTGCCAAGTTGCACCAGTTCGTTTT
CCTCTGTCGTATGATAGTCTACGAAGTAGGACTAGTGCACGTGGAACCGG
AGTCGGACACGACGCTAGAGCGCAGTGCCGCACTATTTCTGGCGGCGTGT
CCTGTCATCATGCTATCGTGGTGTCGCTCCTCTCTCCCCCCCCCCGCTCC
CCCCCCCTCCTCCCTCTCTTTGCCAACGAAGCCGTGGTGCTTCCTCGATT
GTAAGTCCTGTGTAGACCCACCCTCCCTGGAGGTTCGGCAAGCAGTGGCA
ACGCTTTTTAAGCTTACCCCCGCACATACATGCATAATACCCGTTGCTGT
AAAAAACGAAAGGGGCTACGTGTGGGAGCCTGACCGGAACGAGAAGGATG
ACAAGGAGTTCATCACGTTCATCGCGCAGGTGGAGGGTTTGTCGGCGGTC
CCCGACGGAAGGATTTACATGAACGCCTACATCGACACCGTCAAGGGTAA
GACTAAGAAGACGGCCGTAAGCGGACCTCGGCGTATTGTAGAGCGTTCAA
CCGCGTTTTTTTAGCTTGAACTGGTTGGTATGGGCGCTTGCTTGTCGGAG
CATTCCATGTTCTCAACACGGGTGGCTCTTCTCTCTCCGCCCGCCACGCT
AGCAGCCGAAGCTTCTGCTCGATTGCGACGTTTTGTGGTGCCGTGTGCAT
GCATATGTGTGTGTAGCTTGGTGTCTGTCGGCGGAGGCCGTCTTGGCGCA
TCCCGGAAAAACGCGCCCGACGGCGCGAGACCGAGTGCCTGCGCGCGACA
CACACACACACACACACACACACACACACACACACGCACGCACGCACGCA
CGCACGCACGCACGCACGCACGCACGCTGCCGGTTTGCTGACGACGCGGC
ACCCTCGGCACTTTCTTGGTCTGGTCGGCCCATCCGGGATTCAGTCTGCG
CACTGGCCAGGGAGAGAAAAGCGAGCTGCTGTGACACGAAGGCAGCTTGA
TCAATTTTGTGCGTGCCCTCTGCATGCGCCTTCGGTGTGGTCCGGTGCCG
GTGTGTAGCGCGCACACGTATGCAGCGTCGCACTTTTACGCCAAGCCGTG
CCCCTATCTACATACGTTGGAGACGCAGCCAGTGCTAGATTACTTTTTTT
CTCGCCCGCTTCCTGTTTTTCCACTGCCGACCCCCCCCTTCGTCCCCCCC
TCCCTCCCTCACAGGAGACGATGGCAAGACCCGGTACAAGTTTAGCGAGG
GGGCTGTGACTATCAAGGAGGTCATCAACAAGTCGTTCTGGGGGATATTC
AACACGGCGGGCTTGCTGGCCCAGTTTAAGGTCGTGGGAACGTGGGACGC
CTTCCCGATAGACGCCTTGCCGGACACGCCGTCGTCAAGCAAACCCTCGT
CAGAGTAAAAAAGCGGGCTTCGGAGCACGGCTTGCGTTTTTGTCTCTCTG
TAAATTGGCTGGTATTTTCGGTGGCCCAAGCGACGTCGTCGTCTGGGAGG
GGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1171:8295..11599+

>mRNA_L-elsbetiae_contig1171.1485.1 ID=mRNA_L-elsbetiae_contig1171.1485.1|Name=mRNA_L-elsbetiae_contig1171.1485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig1171:8295..11599+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGTGGCTTGGGTCACATGGTCAACGCTACTATGGCTAAGGAAGAC
CTCCTCCTTCGTCACGTTGCCTGGTATCACTGCGCCTGCTCGGCAAGGTA
CGGCCAGAGCGATGGGTTCAGCAGTCCCGATGCCGCCATCTCCCGATGAG
CTAAGAGCCCGGGCTGCGGCGATTCGCGAGGAGCTCAAGGAGTTGGAGGC
CAATGCTTCCGTAAATAGGCGTCCCAACGCTGAGCTGGCTGAACCAAAAC
GGATGAGGGTGGCTTGGGTCACATGGTCAACGCTACTATGGCTAAGGAAG
ACCTCCTCCTTCGTCACGTTGCCTGGTATCACTGCGCCTGCTCGGCAAGG
TACGGCCAGAGCGATGGGTTCAGCAGTCCCGATGCCGCCATCTCCCGATG
AGCTAAGAGCCCGGGCTGCGGCGATTCGCGAGGAGCTCAAGGAGTTGGAG
GCCAATGCTTCCGTAAATAGGCGTCCCAACGCTGAGCTGGCTGAACCAAA
ACGGGTGGTGCCGCTTCCCGAGTCGTTGCTGGATAGCTGCTGGAAGGTTG
TGCTTGAGATTCGCGGCGTCAAGAGCGACAAGAACCGGATACCCGTGCGG
TTGGTCTTCTGCTGCAAGTTTGCCGAGGACGACTTCATCTTGGAAGTGGA
GGGAGACCATCGTTTCGTCAAGCGGTGGTGCCGCTTCCCGAGTCGTTGCT
GGATAGCTGCTGGAAGGTTGTGCTTGAGATTCGCGGCGTCAAGAGCGACA
AGAACCGGATACCCGTGCGGTTGGTCTTCTGCTGCAAGTTTGCCGAGGAC
GACTTCATCTTGGAAGTGGAGGGAGACCATCGTTTCGTCAAGCGGGGCTA
CGTGTGGGAGCCTGACCGGAACGAGAAGGATGACAAGGAGTTCATCACGT
TCATCGCGCAGGTGGAGGGTTTGTCGGCGGTCCCCGACGGAAGGATTTAC
ATGAACGCCTACATCGACACCGTCAAGGGGGCTACGTGTGGGAGCCTGAC
CGGAACGAGAAGGATGACAAGGAGTTCATCACGTTCATCGCGCAGGTGGA
GGGTTTGTCGGCGGTCCCCGACGGAAGGATTTACATGAACGCCTACATCG
ACACCGTCAAGGGAGACGATGGCAAGACCCGGTACAAGTTTAGCGAGGGG
GCTGTGACTATCAAGGAGGTCATCAACAAGTCGTTCTGGGGGATATTCAA
CACGGCGGGCTTGCTGGCCCAGTTTAAGGTCGTGGGAACGTGGGACGCCT
TCCCGATAGACGCCTTGCCGGACACGCCGTCGTCAAGCAAACCCTCGTCA
GAGTAAGAGACGATGGCAAGACCCGGTACAAGTTTAGCGAGGGGGCTGTG
ACTATCAAGGAGGTCATCAACAAGTCGTTCTGGGGGATATTCAACACGGC
GGGCTTGCTGGCCCAGTTTAAGGTCGTGGGAACGTGGGACGCCTTCCCGA
TAGACGCCTTGCCGGACACGCCGTCGTCAAGCAAACCCTCGTCAGAGTAA
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