mRNA_L-elsbetiae_contig11707.1482.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11707.1482.1
Unique NamemRNA_L-elsbetiae_contig11707.1482.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11707.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11707contigL-elsbetiae_contig11707:1157..3197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size383
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11707.1482.1prot_L-elsbetiae_contig11707.1482.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11707 1327..3197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.2056167-UTR-L-elsbetiae_contig11707:1156..13261622815373.2056167-UTR-L-elsbetiae_contig11707:1156..1326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11707 1157..1326 +
1691682866.9272997-UTR-L-elsbetiae_contig11707:1156..13261691682866.9272997-UTR-L-elsbetiae_contig11707:1156..1326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11707 1157..1326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.2167706-CDS-L-elsbetiae_contig11707:1326..14131622815373.2167706-CDS-L-elsbetiae_contig11707:1326..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11707 1327..1413 +
1691682866.945158-CDS-L-elsbetiae_contig11707:1326..14131691682866.945158-CDS-L-elsbetiae_contig11707:1326..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11707 1327..1413 +
1622815373.226377-CDS-L-elsbetiae_contig11707:3071..31971622815373.226377-CDS-L-elsbetiae_contig11707:3071..3197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11707 3072..3197 +
1691682866.9575539-CDS-L-elsbetiae_contig11707:3071..31971691682866.9575539-CDS-L-elsbetiae_contig11707:3071..3197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11707 3072..3197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11707.1482.1

>prot_L-elsbetiae_contig11707.1482.1 ID=prot_L-elsbetiae_contig11707.1482.1|Name=mRNA_L-elsbetiae_contig11707.1482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
MATPPSGPAAGGGAAAAAPAPLVLEPELQALHDEYLLSGVPGWGSASQYT
SVSNSQPERIINFLRSRANEQ
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mRNA from alignment at L-elsbetiae_contig11707:1157..3197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11707.1482.1 ID=mRNA_L-elsbetiae_contig11707.1482.1|Name=mRNA_L-elsbetiae_contig11707.1482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2041bp|location=Sequence derived from alignment at L-elsbetiae_contig11707:1157..3197+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTCGCTTACCCGCCCGCCCTGTGCCGACACTGCGGCGCCAGGGTGTGC
GTGAAAGAATTGCGCACTTGCGGAGAGCCACGCGAGGTCAACGAGAGAAC
TCTTCAAGGTTTTGATCTAGGCGACAAGAGAGAGCTCAGCACAGCAGGGT
GGTGTGTGTAGGCAGGCAGCATGGCAACGCCGCCATCAGGGCCAGCAGCA
GGGGGAGGAGCAGCAGCAGCAGCCCCCGCGCCTCTAGTGTTGGAACCAGA
GTTGCAGGTACGATGGATGCAGCACGAGCTGCGAAACTTGCGGCGGATCG
CTCGCGGGCACGAAGGTGGTGCGAGTCATTTTAAAACCTTTTGCGAGTCA
TTTTTCAAAAATAAACGTCTCCTCCTTCCTGCCTCTCTGTCCTCTGGTGC
CTACCTGTACAGTAAGGAGTAGCGTCAGTTGGTGTGCACCACGTCGCTGT
GGCTTGCGAAACGGCCGGAGGTGTTTGATCCAAGTGCAACCCCTCTGGAT
TTTTCTATTTCGTCCTGGGCACCGCCTCAAGTGTTTTTTTCGATTCTTGA
GCGGTTGGGACGGGCGGAGAAGGCGGCGCGAGGTTTTAGGTGCTGCTTCA
CAATAGCTTTTTTTCTTTTTTTAGAACCAGGAGACGGGACACACGACACA
CACCGCTTCCGTGAAACAGGCGATGTAGTATATGAATGGGGAGATGCAAA
CATGAAATCCCAGCCATTGCACCGTTGCAATGGGGGGCGTGGTGGTGGAG
GCGGGGGGGTGTCTTCAAGAGTATGAATTCAGTGAGGAGGACACATTTTT
TTCTTTTTTTCGGATCTATCTGCTGTTGTTGCACCGAAATATTTGAAAGT
CTCAACGCGGTCTACGGCGTGTCTGCTACACGTAGGTACGTAAGTACTTA
AATTCAAATGAAAATTATGAGATTAGAGATTAGACTATGCTGTACACTAG
CCACTGTTGTACACACGCTTCAAACGAAGTACGTTCCACTCCCCAAAGCT
CCCGCCAGAGTACCGCACCGGGGGGTACCGTAGGTGACACAAGATACCAC
ACCCCCCGGACGGATTATGAAAGCCCGATTCCCCCCCCAACAACAGAAGT
CCCAGTGCCGACAGGGGGTGGCGTTGGAAAGATCTAGTCGAGGGCTGTCC
GAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCGTTCCGGAGTAATGGAG
CTCTCAAATTCGATCCAGGGGGTGTGGTATCTCGTGTCACCTACGGTACT
CTTTTCTACAATAGACGAGTGTCGGTACTGTTGTGTAGTGTCGTTGACGA
GGAGGACGAGGACGGCTGAGCCCTTGACGCGATTAGAGGGAGGTGAAAGG
CAAAAGCAAAGCACACCGCAGGTCCCCCAGAAACCCATGTAAGTCTGCAG
TACATGGTGAGCAGCAGGCACGATAGGTCCTTGTATGTGTCTGTTTTCCT
CCCTGTACACCTTCGGGGGTCTACTTTATTGTGTCAGCCTGGACGCACAG
GATAAGGGGAATGCCGTAACCATGCGAAGGTTCACACCCCGGTGTTAGCA
TTTTTGTAAAGCGTATTTCTCCACAACCAAGGGGGGGGCGAACACTAACT
GATACTCGTACCTGTCTGGAAAGCCCCCGACGAGACGCTTCGAAAACCAC
CCTTTTCGGCAGTGGTACCTACCCTCCTGGTTGTGGAGAAAATGCGCTTA
TAGAAAAACGCTTTATTAAACACGGGGGTGCGAGCCTTCGTATGGTTACG
GTACAGGAGCAAACATAGCTGTGTGCTCGCACTCACGTGTGCACACTCCT
GCGAAAAAAAACAAAAAAAACTGTCCATGACGACTCTCCCCTGCTCCCCC
TTCCGCCCGCCCCCTCTCCCCCTTTCCCCGCCCTTTCTCCCGGTGTACCG
AACGCACGACAAAAGGCCCTGCACGACGAGTATCTTTTGTCGGGGGTTCC
GGGGTGGGGTAGTGCCTCCCAGTACACGTCCGTGAGCAACTCGCAGCCGG
AGCGAATCATCAACTTCCTTCGCTCCAGGGCAAATGAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11707:1157..3197+

>mRNA_L-elsbetiae_contig11707.1482.1 ID=mRNA_L-elsbetiae_contig11707.1482.1|Name=mRNA_L-elsbetiae_contig11707.1482.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig11707:1157..3197+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAACGCCGCCATCAGGGCCAGCAGCAGGGGGAGGAGCAGCAGCAGC
AGCCCCCGCGCCTCTAGTGTTGGAACCAGAGTTGCAGATGGCAACGCCGC
CATCAGGGCCAGCAGCAGGGGGAGGAGCAGCAGCAGCAGCCCCCGCGCCT
CTAGTGTTGGAACCAGAGTTGCAGGCCCTGCACGACGAGTATCTTTTGTC
GGGGGTTCCGGGGTGGGGTAGTGCCTCCCAGTACACGTCCGTGAGCAACT
CGCAGCCGGAGCGAATCATCAACTTCCTTCGCTCCAGGGCAAATGAGCAG
GCCCTGCACGACGAGTATCTTTTGTCGGGGGTTCCGGGGTGGGGTAGTGC
CTCCCAGTACACGTCCGTGAGCAACTCGCAGCCGGAGCGAATCATCAACT
TCCTTCGCTCCAGGGCAAATGAGCAG
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