mRNA_L-elsbetiae_contig11705.1481.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11705.1481.1
Unique NamemRNA_L-elsbetiae_contig11705.1481.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11705.1481.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.590e-37
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 2 
Query:    2 QRGKELMVTCIVLRVGWTGAGPVALELTGFGVEASPPPAPGLPPLLELPTLRCTIGVVWHTLGGPSPDHWVYLRPPRSS 238
            ++GK LMVTC+VLRVGW GAG VALE TGFGVEASPPPAPGLPPL ELPTLRCT  V WHTLGGPSPDHWVY+RP  SS
Sbjct: 2319 EKGKTLMVTCVVLRVGWAGAGRVALETTGFGVEASPPPAPGLPPLFELPTLRCTFVVAWHTLGGPSPDHWVYVRPTVSS 2397
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11705.1481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K0_ECTSI1.590e-3782.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11705contigL-elsbetiae_contig11705:3307..4777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11705.1481.1prot_L-elsbetiae_contig11705.1481.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11705 3307..4758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.1513789-CDS-L-elsbetiae_contig11705:3306..34301622815373.1513789-CDS-L-elsbetiae_contig11705:3306..3430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11705 3307..3430 -
1691682866.894321-CDS-L-elsbetiae_contig11705:3306..34301691682866.894321-CDS-L-elsbetiae_contig11705:3306..3430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11705 3307..3430 -
1622815373.1606605-CDS-L-elsbetiae_contig11705:4621..47581622815373.1606605-CDS-L-elsbetiae_contig11705:4621..4758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11705 4622..4758 -
1691682866.9036617-CDS-L-elsbetiae_contig11705:4621..47581691682866.9036617-CDS-L-elsbetiae_contig11705:4621..4758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11705 4622..4758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.1719298-UTR-L-elsbetiae_contig11705:4758..47771622815373.1719298-UTR-L-elsbetiae_contig11705:4758..4777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11705 4759..4777 -
1691682866.9129755-UTR-L-elsbetiae_contig11705:4758..47771691682866.9129755-UTR-L-elsbetiae_contig11705:4758..4777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11705 4759..4777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11705.1481.1

>prot_L-elsbetiae_contig11705.1481.1 ID=prot_L-elsbetiae_contig11705.1481.1|Name=mRNA_L-elsbetiae_contig11705.1481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
MVTCIVLRVGWTGAGPVALELTGFGVEASPPPAPGLPPLLELPTLRCTIG
VVWHTLGGPSPDHWVYLRPPRSSSSSCSGSQASLAAA
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mRNA from alignment at L-elsbetiae_contig11705:3307..4777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11705.1481.1 ID=mRNA_L-elsbetiae_contig11705.1481.1|Name=mRNA_L-elsbetiae_contig11705.1481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1471bp|location=Sequence derived from alignment at L-elsbetiae_contig11705:3307..4777- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGGGGGAAAGAGCTGATGGTGACGTGCATCGTGCTTAGGGTCGGGT
GGACTGGCGCCGGACCCGTGGCGTTAGAGTTGACCGGCTTCGGGGTGGAA
GCGTCTCCGCCTCCCGCTCCCGGGCTTCCCCCGTTGTTGGAGCTTCCCAC
GCTGAGGTGTGTGCAGCGCGTGGCGCCGACCACTTTTTTGACTGTTTATA
CAAAATCCTTTTTTTTCGGTCCCCGGACACTTTTTTTGCTTTACTTTCGG
TCCCCGTGTTCCTTCTTGCTGCTGTGCTGTTATATAGAGGTGGGCCGTGT
CGAGCACGAAGGTGTCGAACACGAAAACACCTTCCCACCCCGCCTTGCCT
ACCGTAGGTGACACAAGATACCACACCCCCTGGACCGAATTTTAGAGCTC
CATTACTCCGTAACGAAGAAGGTGCCAGCACCAAACGAAACATTTTTTGA
CAGCCCACGACTAGATCTTTCCAACGCTACCCTTTTTGGCACTGACACTC
TTCTTGCTCGGGAGGAATCGAGCTTTGAAAATCTGCCCAGGGGGTGTGGT
ATCTTGTGTCACCTACGGTACCCCCGTTCGCCCGATCGGTGAAACCTGTA
GCTGAGCGGGCTCCAGTAATCTACGCGGGTTTTACGTACGTAAGTTAACG
TAAATTATGGGATACAGGTACGGAGACGGATACAGTAAGCGGGGAGTCGG
TTCGGGACTACGGTTACGGTTCGGGATTACGGTTACGGTTACGGGTAAGG
TTACGGTTAAGGTTACGGTTACGGTTCAGGATTACGGTTACGGTTAAGGT
TAAGGTTACGGTTACGGTTACGGTTACGGAACAACCCCTGTCTCTATTCA
ACCCTCTGTTTCCTAGATAAATTGAATTTCTTCGCAAAGGCGATCCGCGC
ACTCCGTCCCGCATTTTTTTCTTTTTTTCGACATGGGGGTAAGGACAGGG
GGCGCACCCACGAAGCCCCCTATGCTACCAACCATGACGTACGCCAGAAG
CCATAGACTACCTGCACGTATGAACGCATATATATATGTGAGACTGATCA
CCCCCGTCCTCGTGTTCGAGCTCGTACGGTGCAATGGTGTGCATGATGTC
AAGAAAACAAATATATCTACACTTCGTATGTGTATATAATGTAGCGTGCG
TTTTTCACGAATCATTTTTTTTTTTTTTTTTGTTCTGCCCATTTTTTAGA
TTTTGTCGTCTGCCCCTCTGACCCCCATCCTCCACTTCTACTCTAGCTAG
ACGACCCAACCGGGGTCACATAGAATCAATATGCACGAACTGCGCCAGCA
CCACCGCCTCCCATCTCTGACCTGGCGGACCACAAACCGACGGACAGGTG
CACGATCGGCGTCGTGTGGCACACCCTCGGGGGCCCCTCCCCGGACCACT
GGGTCTATCTTCGGCCCCCCAGATCATCGTCGTCGTCGTGTTCCGGGTCG
CAGGCTTCTCTTGCAGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11705:3307..4777-

>mRNA_L-elsbetiae_contig11705.1481.1 ID=mRNA_L-elsbetiae_contig11705.1481.1|Name=mRNA_L-elsbetiae_contig11705.1481.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig11705:3307..4777- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACGTGCATCGTGCTTAGGGTCGGGTGGACTGGCGCCGGACCCGT
GGCGTTAGAGTTGACCGGCTTCGGGGTGGAAGCGTCTCCGCCTCCCGCTC
CCGGGCTTCCCCCGTTGTTGGAGCTTCCCACGCTGAGATGGTGACGTGCA
TCGTGCTTAGGGTCGGGTGGACTGGCGCCGGACCCGTGGCGTTAGAGTTG
ACCGGCTTCGGGGTGGAAGCGTCTCCGCCTCCCGCTCCCGGGCTTCCCCC
GTTGTTGGAGCTTCCCACGCTGAGGTGCACGATCGGCGTCGTGTGGCACA
CCCTCGGGGGCCCCTCCCCGGACCACTGGGTCTATCTTCGGCCCCCCAGA
TCATCGTCGTCGTCGTGTTCCGGGTCGCAGGCTTCTCTTGCAGCCGCCGT
GCACGATCGGCGTCGTGTGGCACACCCTCGGGGGCCCCTCCCCGGACCAC
TGGGTCTATCTTCGGCCCCCCAGATCATCGTCGTCGTCGTGTTCCGGGTC
GCAGGCTTCTCTTGCAGCCGCC
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