mRNA_L-elsbetiae_contig11702.1480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11702.1480.1
Unique NamemRNA_L-elsbetiae_contig11702.1480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.170e-24
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 RLVSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCDCRPR 186
            RLV+TAHS G +F+    TGRAL+S++HHTDQTRSLDFS+DGSSLLT S+DGL+GVCDCRPR
Sbjct:  968 RLVATAHSGGCIFLXXXXTGRALTSILHHTDQTRSLDFSQDGSSLLTGSFDGLIGVCDCRPR 1029          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A7S3PSD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSD3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.810e-12
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    7 VSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCD 174
            V+T H DG   +WD+R G A+  +  H D  RS+DFS DG  LLTAS+DG VG+ D
Sbjct:   25 VATGHLDGSCTIWDIRKGSAMYCLNQHDDDVRSIDFSPDGRWLLTASFDGTVGIID 80          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A2J6KFZ1_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KFZ1_LACSA)

HSP 1 Score: 57.4 bits (137), Expect = 5.250e-8
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 RLVSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCDCRPREASG 198
            + + + H DGH+ +WDM++G+ LS V  H+    S+  SR+G+++LT+  D L  + D R  E  G
Sbjct:  415 QTICSGHMDGHLRLWDMKSGKLLSEVAAHSLAVTSISLSRNGNTVLTSGRDNLHNLFDTRTLEVMG 480          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: UPI0017476A96 (eukaryotic translation initiation factor 3 subunit I isoform X1 n=3 Tax=Hymenoptera TaxID=7399 RepID=UPI0017476A96)

HSP 1 Score: 55.1 bits (131), Expect = 3.300e-7
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    7 VSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCD 174
            + T H DG + +WD+RTG+ LSS+  H  Q   + F++DG+  +TAS D    + D
Sbjct:  182 IITGHEDGEIKLWDVRTGKKLSSIKGHKSQINDMQFNKDGTMFVTASKDHTAKLFD 237          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A2J6LV27_LACSA (ATG16 domain-containing protein n=2 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LV27_LACSA)

HSP 1 Score: 54.3 bits (129), Expect = 6.400e-7
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    7 VSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCDCRPREASG 198
            + + H DGHV +WD++TG+ LS V  H+    S+  SR+G+ +LT+  D L  + D R  E  G
Sbjct:  368 IISGHVDGHVRLWDIKTGKVLSEVAAHSLAVTSVCVSRNGNMVLTSGKDNLHHLFDVRSLEVCG 431          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A6S7MW75_LACSI (Uncharacterized protein n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7MW75_LACSI)

HSP 1 Score: 54.3 bits (129), Expect = 6.510e-7
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    7 VSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCDCRPREASG 198
            + + H DGHV +WD++TG+ LS V  H+    S+  SR+G+ +LT+  D L  + D R  E  G
Sbjct:  766 IISGHVDGHVRLWDIKTGKVLSEVAAHSLAVTSVCVSRNGNMVLTSGRDNLHHLFDVRSLEVCG 829          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A6V7I5G5_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7I5G5_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 1.220e-6
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    7 VSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGLVGVCD 174
            + T H DG + +WD+RTG+ L+S   H  Q   + FS+DG+  +TAS D    + D
Sbjct:   78 IITGHEDGEINIWDVRTGKILTSQKGHKSQINDMQFSKDGTMFITASKDHTAKLFD 133          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A087TLX3_STEMI (WD repeat-containing protein 5 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TLX3_STEMI)

HSP 1 Score: 49.3 bits (116), Expect = 8.240e-6
Identity = 19/45 (42.22%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   25 DGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGL 159
            D  V +WD++TG+ L ++  H+D   ++ F+RDGS ++++SYDGL
Sbjct:   34 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 78          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A418FBG3_9STRA (WD40 repeat-containing protein SMU1 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FBG3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.270e-5
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    4 LVSTAHSDGHVFMWDMRTGRALSSVVH-HTDQTRSLDFSRDGSSLLTASYDGLV 162
            L++TA ++G V +W + TG+ L    H H+    S+ FS+DGS LLTAS+D  V
Sbjct:    7 LLATATAEGKVKVWKLATGQCLRRFEHAHSHSIHSICFSKDGSQLLTASFDQFV 60          
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Match: A0A6G4ZUI1_RHIMP (Putative wd40 domain protein (Fragment) n=2 Tax=Arthropoda TaxID=6656 RepID=A0A6G4ZUI1_RHIMP)

HSP 1 Score: 49.3 bits (116), Expect = 2.300e-5
Identity = 19/45 (42.22%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   25 DGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASYDGL 159
            D  V +WD++TG+ L ++  H+D   ++ F+RDGS ++++SYDGL
Sbjct:   11 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 55          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11702.1480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LHR8_ECTSI1.170e-2474.19CTLH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3PSD3_9STRA5.810e-1251.79Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A2J6KFZ1_LACSA5.250e-836.36Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
UPI0017476A963.300e-739.29eukaryotic translation initiation factor 3 subunit... [more]
A0A2J6LV27_LACSA6.400e-739.06ATG16 domain-containing protein n=2 Tax=Lactuca sa... [more]
A0A6S7MW75_LACSI6.510e-739.06Uncharacterized protein n=1 Tax=Lactuca saligna Ta... [more]
A0A6V7I5G5_9HYME1.220e-639.29Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A087TLX3_STEMI8.240e-642.22WD repeat-containing protein 5 (Fragment) n=1 Tax=... [more]
A0A418FBG3_9STRA2.270e-544.44WD40 repeat-containing protein SMU1 (Fragment) n=1... [more]
A0A6G4ZUI1_RHIMP2.300e-542.22Putative wd40 domain protein (Fragment) n=2 Tax=Ar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11702contigL-elsbetiae_contig11702:5581..5778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D8LHR8
Preferred nameWDR47
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGsKOG0641@1,KOG0641@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815373.1225762-CDS-L-elsbetiae_contig11702:5580..57781622815373.1225762-CDS-L-elsbetiae_contig11702:5580..5778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11702 5581..5778 -
1691682866.8829336-CDS-L-elsbetiae_contig11702:5580..57781691682866.8829336-CDS-L-elsbetiae_contig11702:5580..5778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11702 5581..5778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11702.1480.1prot_L-elsbetiae_contig11702.1480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11702 5581..5778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11702.1480.1

>prot_L-elsbetiae_contig11702.1480.1 ID=prot_L-elsbetiae_contig11702.1480.1|Name=mRNA_L-elsbetiae_contig11702.1480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
RLVSTAHSDGHVFMWDMRTGRALSSVVHHTDQTRSLDFSRDGSSLLTASY
DGLVGVCDCRPREASG
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mRNA from alignment at L-elsbetiae_contig11702:5581..5778-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11702.1480.1 ID=mRNA_L-elsbetiae_contig11702.1480.1|Name=mRNA_L-elsbetiae_contig11702.1480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig11702:5581..5778- (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGGTCTCCACCGCCCACTCCGACGGACACGTGTTCATGTGGGACAT GCGAACTGGCCGCGCGCTGTCCTCCGTCGTCCACCACACCGACCAGACGC GGTCGCTCGACTTCTCCCGGGACGGCAGCTCCCTGCTTACTGCGTCCTAC GACGGCCTGGTCGGCGTCTGCGACTGCCGTCCCCGCGAGGCGTCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11702:5581..5778-

>mRNA_L-elsbetiae_contig11702.1480.1 ID=mRNA_L-elsbetiae_contig11702.1480.1|Name=mRNA_L-elsbetiae_contig11702.1480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig11702:5581..5778- (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGGTCTCCACCGCCCACTCCGACGGACACGTGTTCATGTGGGACAT
GCGAACTGGCCGCGCGCTGTCCTCCGTCGTCCACCACACCGACCAGACGC
GGTCGCTCGACTTCTCCCGGGACGGCAGCTCCCTGCTTACTGCGTCCTAC
GACGGCCTGGTCGGCGTCTGCGACTGCCGTCCCCGCGAGGCGTCCGGCAG
GCTGGTCTCCACCGCCCACTCCGACGGACACGTGTTCATGTGGGACATGC
GAACTGGCCGCGCGCTGTCCTCCGTCGTCCACCACACCGACCAGACGCGG
TCGCTCGACTTCTCCCGGGACGGCAGCTCCCTGCTTACTGCGTCCTACGA
CGGCCTGGTCGGCGTCTGCGACTGCCGTCCCCGCGAGGCGTCCGGC
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