mRNA_L-elsbetiae_contig1170.1478.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1170.1478.1
Unique NamemRNA_L-elsbetiae_contig1170.1478.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1170.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1170contigL-elsbetiae_contig1170:10133..10547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size415
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815372.462845-CDS-L-elsbetiae_contig1170:10132..105461622815372.462845-CDS-L-elsbetiae_contig1170:10132..10546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1170 10133..10546 +
1691682866.689117-CDS-L-elsbetiae_contig1170:10132..105461691682866.689117-CDS-L-elsbetiae_contig1170:10132..10546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1170 10133..10546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1170.1478.1prot_L-elsbetiae_contig1170.1478.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1170 10133..10546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1170.1478.1

>prot_L-elsbetiae_contig1170.1478.1 ID=prot_L-elsbetiae_contig1170.1478.1|Name=mRNA_L-elsbetiae_contig1170.1478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
RVGRNAGTTKEASGAAAMSSLTTKRYLPTRIVAYLGACFVVGSGGTEMHA
VRAGGAGKGREGKGSKDQPKSKASCIGLAVVLHSAESVRHECVSKNNQEN
QARILPTFRDGTLVWKSDGIPYALFAAMGYYWSGRVLS
back to top

mRNA from alignment at L-elsbetiae_contig1170:10133..10547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1170.1478.1 ID=mRNA_L-elsbetiae_contig1170.1478.1|Name=mRNA_L-elsbetiae_contig1170.1478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=415bp|location=Sequence derived from alignment at L-elsbetiae_contig1170:10133..10547+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGTCGGCCGAAACGCGGGGACAACGAAGGAAGCAAGCGGTGCGGCAGC
AATGTCATCGCTCACGACGAAACGCTACCTACCTACACGGATCGTGGCGT
ACTTGGGCGCGTGCTTCGTCGTTGGCTCCGGTGGCACCGAGATGCACGCG
GTGCGGGCGGGGGGGGCAGGGAAGGGAAGGGAAGGCAAGGGAAGTAAAGA
CCAACCGAAATCGAAGGCTTCCTGCATAGGCTTGGCTGTTGTGTTGCACT
CGGCAGAGAGTGTGCGGCACGAATGTGTTTCGAAAAACAATCAGGAAAAT
CAAGCACGAATCCTTCCCACATTTAGAGACGGGACTCTTGTGTGGAAATC
CGACGGTATTCCATATGCATTGTTCGCAGCGATGGGATACTATTGGTCCG
GCCGAGTACTTTCAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1170:10133..10547+

>mRNA_L-elsbetiae_contig1170.1478.1 ID=mRNA_L-elsbetiae_contig1170.1478.1|Name=mRNA_L-elsbetiae_contig1170.1478.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1170:10133..10547+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGTCGGCCGAAACGCGGGGACAACGAAGGAAGCAAGCGGTGCGGCAGC
AATGTCATCGCTCACGACGAAACGCTACCTACCTACACGGATCGTGGCGT
ACTTGGGCGCGTGCTTCGTCGTTGGCTCCGGTGGCACCGAGATGCACGCG
GTGCGGGCGGGGGGGGCAGGGAAGGGAAGGGAAGGCAAGGGAAGTAAAGA
CCAACCGAAATCGAAGGCTTCCTGCATAGGCTTGGCTGTTGTGTTGCACT
CGGCAGAGAGTGTGCGGCACGAATGTGTTTCGAAAAACAATCAGGAAAAT
CAAGCACGAATCCTTCCCACATTTAGAGACGGGACTCTTGTGTGGAAATC
CGACGGTATTCCATATGCATTGTTCGCAGCGATGGGATACTATTGGTCCG
GCCGAGTACTTTCACGGGTCGGCCGAAACGCGGGGACAACGAAGGAAGCA
AGCGGTGCGGCAGCAATGTCATCGCTCACGACGAAACGCTACCTACCTAC
ACGGATCGTGGCGTACTTGGGCGCGTGCTTCGTCGTTGGCTCCGGTGGCA
CCGAGATGCACGCGGTGCGGGCGGGGGGGGCAGGGAAGGGAAGGGAAGGC
AAGGGAAGTAAAGACCAACCGAAATCGAAGGCTTCCTGCATAGGCTTGGC
TGTTGTGTTGCACTCGGCAGAGAGTGTGCGGCACGAATGTGTTTCGAAAA
ACAATCAGGAAAATCAAGCACGAATCCTTCCCACATTTAGAGACGGGACT
CTTGTGTGGAAATCCGACGGTATTCCATATGCATTGTTCGCAGCGATGGG
ATACTATTGGTCCGGCCGAGTACTTTCA
back to top