mRNA_L-elsbetiae_contig11698.1470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11698.1470.1
Unique NamemRNA_L-elsbetiae_contig11698.1470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11698.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11698contigL-elsbetiae_contig11698:973..2813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size364
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11698.1470.1prot_L-elsbetiae_contig11698.1470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11698 1220..2813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.8298008-UTR-L-elsbetiae_contig11698:972..10151622815371.8298008-UTR-L-elsbetiae_contig11698:972..1015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11698 973..1015 -
1691682866.3459709-UTR-L-elsbetiae_contig11698:972..10151691682866.3459709-UTR-L-elsbetiae_contig11698:972..1015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11698 973..1015 -
1622815371.8442721-UTR-L-elsbetiae_contig11698:1215..12191622815371.8442721-UTR-L-elsbetiae_contig11698:1215..1219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11698 1216..1219 -
1691682866.3540077-UTR-L-elsbetiae_contig11698:1215..12191691682866.3540077-UTR-L-elsbetiae_contig11698:1215..1219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11698 1216..1219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.855933-CDS-L-elsbetiae_contig11698:1219..13441622815371.855933-CDS-L-elsbetiae_contig11698:1219..1344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11698 1220..1344 -
1691682866.3614066-CDS-L-elsbetiae_contig11698:1219..13441691682866.3614066-CDS-L-elsbetiae_contig11698:1219..1344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11698 1220..1344 -
1622815371.8673143-CDS-L-elsbetiae_contig11698:2623..28131622815371.8673143-CDS-L-elsbetiae_contig11698:2623..2813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11698 2624..2813 -
1691682866.3718584-CDS-L-elsbetiae_contig11698:2623..28131691682866.3718584-CDS-L-elsbetiae_contig11698:2623..2813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11698 2624..2813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11698.1470.1

>prot_L-elsbetiae_contig11698.1470.1 ID=prot_L-elsbetiae_contig11698.1470.1|Name=mRNA_L-elsbetiae_contig11698.1470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
PEPAQATPPKPLTGTTCYVCRRLEGKDDGWGFSATAVDEHVYLIKPTRGT
SSRLPYTTAFQSPRVDDSSGEANDFQQFSSFTDGGNLMAETAVIMGYSYS
SFNH*
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mRNA from alignment at L-elsbetiae_contig11698:973..2813-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11698.1470.1 ID=mRNA_L-elsbetiae_contig11698.1470.1|Name=mRNA_L-elsbetiae_contig11698.1470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1841bp|location=Sequence derived from alignment at L-elsbetiae_contig11698:973..2813- (Laminarionema elsbetiae ELsaHSoW15)
CCCGAACCCGCGCAAGCCACACCCCCCAAACCACTAACCGGTACCACATG
TTATGTGTGTCGCAGGCTGGAAGGCAAGGATGATGGCTGGGGATTTTCGG
CCACCGCCGTGGATGAGCATGTTTATCTAATCAAGCCCACCCGAGGAACT
TCTTCTAGACTACCATACACGACAGCATTTCAGAGCCCCCGTGAGTTTGG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTCGTAGGTATGCAGACTC
GTGGTGCAAGCTTTGAATTTGGAACAGAGTAGATTGCAGGTGGAGGCATT
AATCTAGACTTGTATCTGAAAAGGTACATTGTTCTCATCATGCAAGCCAG
CCCAGTGGTGACGAGGTCATCATCACGGCCTACCGACGTGAACGACCGTA
TGGTCTACAACAGTAGTGGCGGTCGGTTTGGGCGCATTCATTCTGTCGAG
TCTTTCTGCAGGAGAGATCGGCTACAAAAAGTGAGCAGTATGCTCGATCA
TGAAACGTTTGTACAAGGTCTCTCGAATTGTAATTTGACCCACAGGGGGG
TGTAGGACTTTACCCCCGGTTGGTGATTTTGGCTTGTCCAGTCTTGAAAG
ATAAGCAGATAATCAAAAATGGAACCTAACCCACATTGGAGACGGGTCTC
CCGTGATAATTTTCGGTATTCCATAAAGTGACGTAATATTGGGCCGGCCG
AGTAGAAAAACACAAAATATTCGAAGATTCAACATCTCCCCTGCAGTTCT
CTGCCAGGTCAAACAACATGTATTCCGGGGAGAAACCCTCCGTGATGTGA
TGATACTGTCAACAACTTTTATGATAGGAACACATCGCATGATTTGAAAA
GTCAAGATGCTAGCTAAATATCGGGTTGGACAGTAGTACAAAAGTACATA
TTTTTGTTTTATTTTTACCTCGCATAACTTCGACCACCGTCGACGAGGGA
AAGGGACGGCTGAACCCTTCTCGCGACAAAAATCTTAGGCAAGCACCGCA
GACGGGGGGAGTGGGAGCCTTGGGGAACCCTTCTGTGTGACCACGGTTCA
GTACTCGGGCAAGATGTCCTCGTGACAGGGAGCCCATCGAGCACTGGAAA
TAAACGTGAAAAAAAAAAAGCGGTACATAGAGGGGAGCGGGGGGCTCCAC
ACTTTCTAGTTGTCTTGATTTGTGTCACTTTGCTGACCATTCCGGCCCAT
GTTATTTTCGTTACCTTTATTGAAGTAGACTTAAGTTAGCCTGTGACCAC
GGGAATTAACCGCATCAAGTGTTAAAAGTACGGACATACCTATGGAGGTA
GACTAGTGGGTGGAGAGATCGGAGCAGTTTTTAATGAAAAGAAATAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAATTTGTGATGAGGTCAACTCCACCCTCGTAAAGCTAGCACCCTG
CACTGTTTGCATGCTTCAGGTGTCGACGACAGCTCGGGAGAGGCCAACGA
CTTCCAGCAGTTCTCCTCTTTCACCGATGGTGGCAATCTAATGGCCGAGA
CCGCTGTCATCATGGGATACAGCTACAGTAGCTTCAACCACTGAATAGGT
GAGCGCTTGTTGCTGTTGTTGTCGTTGTAACTGCTGCTCGTTTCTGGAGC
CAATCGTAACGGAAGAACCCTCGACAACATAGTTCCCCACCAGAACAGGT
GAACAGCTACTCTCTCCTTCTTACCTGCTTGCCCTCTTCCCCCCGTGCGC
CCCTGCGTTGCCCCTCCACCCCCCCCCGATGAAATCGACGATCACCAGCC
TCACCAACATCAAGCTCCGCCAGGAAGACGTACAATCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11698:973..2813-

>mRNA_L-elsbetiae_contig11698.1470.1 ID=mRNA_L-elsbetiae_contig11698.1470.1|Name=mRNA_L-elsbetiae_contig11698.1470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig11698:973..2813- (Laminarionema elsbetiae ELsaHSoW15)
CCCGAACCCGCGCAAGCCACACCCCCCAAACCACTAACCGGTACCACATG
TTATGTGTGTCGCAGGCTGGAAGGCAAGGATGATGGCTGGGGATTTTCGG
CCACCGCCGTGGATGAGCATGTTTATCTAATCAAGCCCACCCGAGGAACT
TCTTCTAGACTACCATACACGACAGCATTTCAGAGCCCCCCCCGAACCCG
CGCAAGCCACACCCCCCAAACCACTAACCGGTACCACATGTTATGTGTGT
CGCAGGCTGGAAGGCAAGGATGATGGCTGGGGATTTTCGGCCACCGCCGT
GGATGAGCATGTTTATCTAATCAAGCCCACCCGAGGAACTTCTTCTAGAC
TACCATACACGACAGCATTTCAGAGCCCCCGTGTCGACGACAGCTCGGGA
GAGGCCAACGACTTCCAGCAGTTCTCCTCTTTCACCGATGGTGGCAATCT
AATGGCCGAGACCGCTGTCATCATGGGATACAGCTACAGTAGCTTCAACC
ACTGAGTGTCGACGACAGCTCGGGAGAGGCCAACGACTTCCAGCAGTTCT
CCTCTTTCACCGATGGTGGCAATCTAATGGCCGAGACCGCTGTCATCATG
GGATACAGCTACAGTAGCTTCAACCACTGA
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