mRNA_L-elsbetiae_contig11694.1469.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11694.1469.1
Unique NamemRNA_L-elsbetiae_contig11694.1469.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.030e-55
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            H HPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCE+R CQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC
Sbjct: 2106 HPHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEDRNCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 2203
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 3.510e-55
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            H HPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCE+R CQSKNCSRMKNLLTHGASC IRAQGGCGVCKRIWALLQIHARQCKKDRC
Sbjct: 1219 HPHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEDRNCQSKNCSRMKNLLTHGASCTIRAQGGCGVCKRIWALLQIHARQCKKDRC 1316
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A7S0CDT5_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDT5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.640e-34
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            H H LKPIPV   A QQ  L+  QR+ERQR I+LHMQLL HASTC    C S NC++MK LL HG +C ++ QGGC VCKRIWALLQIHARQCK++ C
Sbjct:    6 HPHVLKPIPV---AGQQNQLTEVQRKERQRSIQLHMQLLMHASTCVSPKCPSANCTKMKGLLRHGDTCKVKHQGGCNVCKRIWALLQIHARQCKQNPC 100
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A7S2KCF1_9STRA (Histone acetyltransferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KCF1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.570e-32
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            H HPL+ IPV     QQ  L+P QR+ERQR I+LHM LL HASTC    C S NC++MK LL HG  C I+A GGC VCKRIWALLQIHA+QCK++ C
Sbjct:  122 HPHPLQAIPV---GSQQSALTPEQRKERQRSIQLHMTLLLHASTCRSTECSSANCAKMKGLLKHGTQCKIKANGGCNVCKRIWALLQIHAKQCKQENC 216
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A7S2R3Z8_9STRA (Histone acetyltransferase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Z8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.930e-31
Identity = 64/98 (65.31%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            H H LK IPV  A+ QQ  L+ AQR+ERQR I+LHM LLQHA+TC    C S NC++MK LL HGA C I+A GGC VCKRIWALLQIHARQCK+++C
Sbjct: 1380 HPHQLKQIPV--ASGQQSELTEAQRKERQRSIQLHMTLLQHAATCVSPKCPSANCTKMKGLLKHGAHCQIKATGGCHVCKRIWALLQIHARQCKQEQC 1475
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A7S2A1M7_TRICV (Histone acetyltransferase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1M7_TRICV)

HSP 1 Score: 113 bits (283), Expect = 1.930e-30
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKD 297
            H H LK IPV    Q +  L+ AQR+ERQR I++HM LL HA+TC    C S NC++MK LL HG SC ++A GGC VCKRIWALLQIHARQCK+ 
Sbjct:   30 HAHSLKAIPVTNGRQNE--LTEAQRKERQRSIQMHMTLLLHAATCNNPKCPSANCTKMKGLLKHGKSCQVKATGGCNVCKRIWALLQIHARQCKQQ 123
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: K0RAM4_THAOC (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAM4_THAOC)

HSP 1 Score: 122 bits (307), Expect = 2.160e-30
Identity = 62/101 (61.39%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VQAHHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            V  H HPL  IPV  A Q    L+P QR+ER+R I+LHM LL HASTC    C S NC++MK LL HG+ C ++AQGGC +CKRIWALLQIHARQCK D C
Sbjct:  630 VPKHPHPLTAIPVSGAQQT---LTPEQRKERKRSIQLHMTLLLHASTCRSPKCNSANCAKMKGLLKHGSQCKVKAQGGCNICKRIWALLQIHARQCKTDNC 727
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A6S8EDF0_9STRA (Histone acetyltransferase n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8EDF0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.820e-30
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:   58 QKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            Q HL+  QR ERQR I+LHMQLLQHAS C    C S NC++MKNLL HGASC+IR QGGC +C+RIWALLQIHARQC+++ C
Sbjct: 1198 QGHLTEEQRRERQRSIQLHMQLLQHASGCRNNRCPSANCNKMKNLLKHGASCSIRVQGGCAICRRIWALLQIHARQCRRENC 1279
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A1Z5JQN1_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQN1_FISSO)

HSP 1 Score: 120 bits (300), Expect = 2.000e-29
Identity = 62/98 (63.27%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:   10 HHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            H HPLKPI V     QQ  L+  QR+ERQR I+LHM LLQHA+TC    C S NC++MK LL HG+ C I+A GGC VCKRIWALLQIHARQCK   C
Sbjct: 1420 HPHPLKPIAV--GNGQQSDLTEEQRKERQRSIQLHMTLLQHAATCSNAKCPSANCTKMKGLLKHGSQCQIKATGGCNVCKRIWALLQIHARQCKTVNC 1515
[Close]
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Match: A0A7S3K383_9STRA (Histone acetyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K383_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.790e-29
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   58 QKHLSPAQREERQRHIKLHMQLLQHASTCEERTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDRC 303
            Q H +  QR ERQR I+LHMQLLQHAS C    C S NC++MKNLL HGASC+IR QGGC +C+RIWALLQIHARQC+++ C
Sbjct:  614 QGHQTEEQRRERQRSIQLHMQLLQHASGCRNNRCPSANCNKMKNLLKHGASCSIRVQGGCAICRRIWALLQIHARQCRRENC 695
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11694.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPY4_9PHAE1.030e-5596.94Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
D8LPT9_ECTSI3.510e-5595.92Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A7S0CDT5_9STRA1.640e-3464.29Histone acetyltransferase (Fragment) n=1 Tax=Probo... [more]
A0A7S2KCF1_9STRA1.570e-3262.24Histone acetyltransferase n=1 Tax=Skeletonema mari... [more]
A0A7S2R3Z8_9STRA8.930e-3165.31Histone acetyltransferase n=1 Tax=Eucampia antarct... [more]
A0A7S2A1M7_TRICV1.930e-3060.42Histone acetyltransferase (Fragment) n=1 Tax=Trier... [more]
K0RAM4_THAOC2.160e-3061.39Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]
A0A6S8EDF0_9STRA7.820e-3068.29Histone acetyltransferase n=2 Tax=Aureoumbra lagun... [more]
A0A1Z5JQN1_FISSO2.000e-2963.27Histone acetyltransferase n=2 Tax=Fistulifera sola... [more]
A0A7S3K383_9STRA4.790e-2967.07Histone acetyltransferase n=1 Tax=Aureoumbra lagun... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11694contigL-elsbetiae_contig11694:5276..5805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog2880.D8LPT9
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Ec32 ortholog descriptionCBP-type histone acetylase, zinc finger and Bromodomain protein
Ec32 orthologEc-18_002450.1
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.4777138-CDS-L-elsbetiae_contig11694:5275..54611622815371.4777138-CDS-L-elsbetiae_contig11694:5275..5461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11694 5276..5461 +
1691682866.3251483-CDS-L-elsbetiae_contig11694:5275..54611691682866.3251483-CDS-L-elsbetiae_contig11694:5275..5461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11694 5276..5461 +
1622815371.491102-CDS-L-elsbetiae_contig11694:5688..58051622815371.491102-CDS-L-elsbetiae_contig11694:5688..5805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11694 5689..5805 +
1691682866.3382275-CDS-L-elsbetiae_contig11694:5688..58051691682866.3382275-CDS-L-elsbetiae_contig11694:5688..5805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11694 5689..5805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11694.1469.1prot_L-elsbetiae_contig11694.1469.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11694 5276..5805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11694.1469.1

>prot_L-elsbetiae_contig11694.1469.1 ID=prot_L-elsbetiae_contig11694.1469.1|Name=mRNA_L-elsbetiae_contig11694.1469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
VQAHHHPLKPIPVRPAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEE
RTCQSKNCSRMKNLLTHGASCAIRAQGGCGVCKRIWALLQIHARQCKKDR
C
back to top

mRNA from alignment at L-elsbetiae_contig11694:5276..5805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11694.1469.1 ID=mRNA_L-elsbetiae_contig11694.1469.1|Name=mRNA_L-elsbetiae_contig11694.1469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=530bp|location=Sequence derived from alignment at L-elsbetiae_contig11694:5276..5805+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCAGGCGCACCACCACCCCCTCAAGCCGATCCCGGTTCGGCCGGCGGC
GCAGCAGCAGAAGCACCTCAGCCCCGCGCAGCGGGAGGAGCGGCAGCGGC
ACATCAAGCTGCACATGCAGCTGCTCCAGCACGCGTCCACCTGCGAGGAA
AGGACCTGCCAGTCGAAGAACTGCAGCCGGATGAAGGTGGGGGGGGGGGG
GGGGGGCACAAGAGGCGACGGGGGTTGGGGGGAGAGGGAGGCGCTTTTAT
TTATCCATATTGTACCCCGTGTTTTGACAACATCTATAAGGATGTAACAC
AGACTGAACATTAAAAGACACAAATTGACCCGAACCTTGTGCGTTGCCAT
CACTAAATAAGGTGTCTGTTTTCATTTGTTTTTTCGTTCATGCGCTTGCT
TCTCTGTTGTCAGAACCTCCTGACGCACGGCGCGAGCTGCGCCATCCGAG
CGCAGGGGGGGTGCGGAGTGTGCAAGCGCATCTGGGCCCTGCTGCAGATC
CACGCGAGGCAGTGCAAGAAAGACCGGTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11694:5276..5805+

>mRNA_L-elsbetiae_contig11694.1469.1 ID=mRNA_L-elsbetiae_contig11694.1469.1|Name=mRNA_L-elsbetiae_contig11694.1469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig11694:5276..5805+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCAGGCGCACCACCACCCCCTCAAGCCGATCCCGGTTCGGCCGGCGGC
GCAGCAGCAGAAGCACCTCAGCCCCGCGCAGCGGGAGGAGCGGCAGCGGC
ACATCAAGCTGCACATGCAGCTGCTCCAGCACGCGTCCACCTGCGAGGAA
AGGACCTGCCAGTCGAAGAACTGCAGCCGGATGAAGGTCCAGGCGCACCA
CCACCCCCTCAAGCCGATCCCGGTTCGGCCGGCGGCGCAGCAGCAGAAGC
ACCTCAGCCCCGCGCAGCGGGAGGAGCGGCAGCGGCACATCAAGCTGCAC
ATGCAGCTGCTCCAGCACGCGTCCACCTGCGAGGAAAGGACCTGCCAGTC
GAAGAACTGCAGCCGGATGAAGAACCTCCTGACGCACGGCGCGAGCTGCG
CCATCCGAGCGCAGGGGGGGTGCGGAGTGTGCAAGCGCATCTGGGCCCTG
CTGCAGATCCACGCGAGGCAGTGCAAGAAAGACCGGTGCAACCTCCTGAC
GCACGGCGCGAGCTGCGCCATCCGAGCGCAGGGGGGGTGCGGAGTGTGCA
AGCGCATCTGGGCCCTGCTGCAGATCCACGCGAGGCAGTGCAAGAAAGAC
CGGTGC
back to top