mRNA_L-elsbetiae_contig11691.1467.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11691.1467.1
Unique NamemRNA_L-elsbetiae_contig11691.1467.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 133 bits (334), Expect = 2.080e-31
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            YEGEINKLA NVA GRQM+G+HYRFD  +GL+LGETI VR LHQEL++F E   +EFRLFTGE IKL  DG F IDG  CSG  +TGV +C
Sbjct:  584 YEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEEATFEFRLFTGEVIKLFQDGTFSIDGDMCSGLVYTGVADC 674
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 132 bits (331), Expect = 2.740e-31
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            +EGEINKLA NVA GRQM+G+HYRFD  +GL+LGETI VR LHQEL++F E   +EFRLFTGE IKL  DG F IDG +C G  +TGV NC
Sbjct:  465 FEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTGVENC 555
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.770e-27
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            +EGEINKLA NVA+GR M+GVH+R DS  GL+LGET AVR L QE V++PEN  YEFRL +G+TI+L+ DG F+ID   CSG AF G   C
Sbjct:  534 FEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQEAVAYPENAGYEFRLMSGKTIRLETDGTFFIDDTLCSGDAFMGADLC 624
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.190e-26
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            +EGEINKLA NVA GR M GVH+R DS +GL+LGE  AVR L QE V+FPEN  YEF L +GETI+L+ DG F+I+ + CSG AF G   C
Sbjct:  523 FEGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVRILQQEAVTFPENAGYEFNLMSGETIRLETDGTFFINDRLCSGDAFMGADLC 613
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 86.3 bits (212), Expect = 2.970e-15
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGE 190
            +EGEINK A NVA+GR  MGVH+R D+ EGL+LGET+AVR L QEL  FPE   YEFR+ +GE
Sbjct:  511 FEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRILMQELAGFPELEPYEFRVMSGE 573
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENH---------FYEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC*E 280
            YEGE+NK+A+NV IGR  +GVHYR D   G ++GET AVRRL QEL +  E            Y+FRL++G+ ++L     F +DG+ C G  +TG   C E
Sbjct:  518 YEGELNKVASNVIIGRSHIGVHYRMDGVYGALMGETSAVRRLQQELPNLSEARDTKGSIPPASYKFRLYSGKVLELLAKDIFKLDGRTCKGL-YTGDDFCDE 618
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.540e-13
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 2 
Query:    5 EGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHF-------------YEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            EGE+NK+A+NV IGR  +GVH+R D   G ++GET AVRRL QEL   PE                Y+FRL++G+ +++     F +DG+ C GA +TG   C
Sbjct:  300 EGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQELSGLPEARVVDGARSDDIPPATYKFRLYSGKMLEIFSVTLFRLDGQLCKGA-YTGDDFC 401
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.430e-13
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 2 
Query:    5 EGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHF-------------YEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            EGE+NK+A+NV IGR  +GVH+R D   G ++GET AVRRL QEL   PE                Y+FRL++G+ +++     + +DG+ C GA +TG   C
Sbjct:  517 EGELNKVASNVIIGRSHLGVHWRMDGVSGALMGETSAVRRLQQELSGLPEARVVDGARSDDIPPATYKFRLYSGKMLEIFGVTLYRLDGQLCKGA-YTGDDFC 618
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 78.6 bits (192), Expect = 1.160e-12
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:    2 YEGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENH---------FYEFRLFTGETIKLDDDGEFYIDGKRCSGAAFTGVTNC 274
            YEGE+NK+ +NVAIGR  +GVH+R D   G  +GE  A+RRL QEL   PE            Y+FRL++G  I+L  D  + +  + C G  FTG   C
Sbjct:  516 YEGELNKVTSNVAIGRSHLGVHWRMDGVFGAEMGEAGAIRRLQQELGGLPEARDTEGPIPPASYKFRLYSGTMIELFPDNRYMLGDQMCKGF-FTGDDFC 614
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BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Match: A0A0P1GKM0_9RHOB (PAP2 superfamily protein n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GKM0_9RHOB)

HSP 1 Score: 71.6 bits (174), Expect = 5.500e-11
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:    5 EGEINKLATNVAIGRQMMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGETIKLDDDGEFYID 229
            EGE+NKLA N+AIGR M GVHY  D +E L LGE IAV  LH+++ ++ E      + F G+ I +  DG+F ++
Sbjct:  145 EGELNKLAANIAIGRDMAGVHYYSDYYESLRLGERIAVGILHEQMSNYNEPVSMYLKSFDGDRITIKTDGKFDVE 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11691.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O82433_FUCDI2.080e-3168.13Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO2.740e-3167.03Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
Q4LDE6_9PHAE6.770e-2762.64Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
B7ZGM6_9PHAE4.190e-2661.54Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
A0A3G3BM28_SACJA2.970e-1565.08Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
D8LTP5_ECTSI2.400e-1445.10Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
B7ZGM5_9PHAE2.540e-1342.72Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
B7ZGM1_9PHAE6.430e-1341.75Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
K7ZUA3_ASCNO1.160e-1243.00Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
A0A0P1GKM0_9RHOB5.500e-1146.67PAP2 superfamily protein n=1 Tax=Tropicibacter nap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11691contigL-elsbetiae_contig11691:2..1945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4e-07
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size866
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11691.1467.1prot_L-elsbetiae_contig11691.1467.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11691 524..1356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.289774-UTR-L-elsbetiae_contig11691:1..491622815371.289774-UTR-L-elsbetiae_contig11691:1..49Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11691 2..49 +
1691682866.2145846-UTR-L-elsbetiae_contig11691:1..491691682866.2145846-UTR-L-elsbetiae_contig11691:1..49Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11691 2..49 +
1622815371.3008661-UTR-L-elsbetiae_contig11691:519..5231622815371.3008661-UTR-L-elsbetiae_contig11691:519..523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11691 520..523 +
1691682866.2235694-UTR-L-elsbetiae_contig11691:519..5231691682866.2235694-UTR-L-elsbetiae_contig11691:519..523Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11691 520..523 +
1622815371.3313541-UTR-L-elsbetiae_contig11691:1356..19451622815371.3313541-UTR-L-elsbetiae_contig11691:1356..1945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11691 1357..1945 +
1691682866.2490702-UTR-L-elsbetiae_contig11691:1356..19451691682866.2490702-UTR-L-elsbetiae_contig11691:1356..1945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11691 1357..1945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.3109558-CDS-L-elsbetiae_contig11691:523..6041622815371.3109558-CDS-L-elsbetiae_contig11691:523..604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11691 524..604 +
1691682866.2328234-CDS-L-elsbetiae_contig11691:523..6041691682866.2328234-CDS-L-elsbetiae_contig11691:523..604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11691 524..604 +
1622815371.3216815-CDS-L-elsbetiae_contig11691:1212..13561622815371.3216815-CDS-L-elsbetiae_contig11691:1212..1356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11691 1213..1356 +
1691682866.2413635-CDS-L-elsbetiae_contig11691:1212..13561691682866.2413635-CDS-L-elsbetiae_contig11691:1212..1356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11691 1213..1356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11691.1467.1

>prot_L-elsbetiae_contig11691.1467.1 ID=prot_L-elsbetiae_contig11691.1467.1|Name=mRNA_L-elsbetiae_contig11691.1467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MMGVHYRFDSHEGLVLGETIAVRRLHQELVSFPENHFYEFRLFTGETIKL
DDDGEFYIDGKRCSGAAFTGVTNC*
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mRNA from alignment at L-elsbetiae_contig11691:2..1945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11691.1467.1 ID=mRNA_L-elsbetiae_contig11691.1467.1|Name=mRNA_L-elsbetiae_contig11691.1467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1944bp|location=Sequence derived from alignment at L-elsbetiae_contig11691:2..1945+ (Laminarionema elsbetiae ELsaHSoW15)
CTACGAGGGGGAGATCAACAAGCTCGCCACCAACGTCGCCATCGGCAGGT
AAACGCGAACTCTGCGCGAAGCTATTTAGCGTGTTGCTCCAACCGTCTCG
ACTTCACCGCAGTTTCTGCGGCTTGACAGTCACAATTGTGGGTGTTTGCT
TTCCTTTTTACATAGCACGATGTAGACATCATATGTATTTGTTGCAGCAG
CGGTTGATTTGAGCAAAATTCTCGGCGGAAAATCAGTGGATCATGTTCGC
TTGCCTCCGAAATGTGGCCGCGCTAGATATACGTGCACCAGCGAGCTTGG
AAAAGCCGTCGGCTGTTTTTTGGTACGAGCGCCATTGGGACGGGCACTAA
AGTTCCAGAAGCAGACAGCAAGCGACATCATCGCCGGAGTTCTGAACATT
TTTCTTCGGTTTTGGTGCGTTTATGTTTCAGACTCTCCGACTCCATCACT
CCTCCCCCGCTCTTACTGCGCCTCGAATTTCTCGACGTTGATGGCCTCTA
CTCCAACAACATTTTCAGGCAAATGATGGGAGTGCATTACCGCTTCGACA
GCCACGAGGGCCTTGTCCTTGGCGAAACCATCGCCGTGCGCAGGCTCCAC
CAGGTGAACAGAAACGCGCCATTCATGCAAATAGTAGTGAAAAAATAACG
CACCCCTCGTGTTGACGCATTGAAGATGATACCCGCCAGAAAACCAAAGA
GCTCCAGGAACTCGCACAGGGGGTTGGTTCAGGGTTCAGGCCACAGAAGA
GTCGTTAGCCCGGCCGGGTTGTTAAGCAGGAACGTTCCAACGTGTCGCGT
ACACGATCATCGCGCCTTGTGTGTAAGGTACAAACGGGACGGGGTAGCCG
CAGAGCGCAGTCGACAAAGAAACAGGAAGGGTGTGCACAGCACTTCCCGG
TGCAGGTGCCCTTGTCTCTCATTTGCTGGACGGCAAAGAGCGGTGCGTGG
GGCCGAATCTGCCCCCCTCCGCCTCCGCACAGTACCGGCAGGTCAATTCA
TGGATTGCCACATCGCCTGATTCTTCCGTGGTGCTTGTTTGCGGGGGTCC
ACTGTTGTTGGGATGTCCAGTTTCCTGCTGGGAATATATTTTCTCTACAT
AGTATCTGCCCATCACGCTCCGCGCAGTACCACGCATTCTCGTTCCTCCA
TTCATTCTAGGACCTCATCAATTCAATGAAACACGTATCTATATCTCTTC
ATCTTATACAGGAGCTCGTGAGTTTCCCCGAGAACCACTTCTACGAGTTC
CGCCTCTTCACTGGTGAAACCATCAAGCTAGACGACGACGGCGAGTTCTA
CATCGACGGGAAACGCTGCTCCGGGGCCGCCTTCACTGGGGTGACCAACT
GCTAAGAAGCGGCAGTTGGATTAGTTGAATGGATTAAACGAAGAATAACC
ATGCATGGCCGCAATGAGGAGTTCAGTGCCTCATGGGCCATGTATGTGGG
AAAATGAGCGCTGAGGGTGAGTGTTCGATGACTCCGCCGGAGATAAACTG
ATAGTGGTGCATGTGGCGTGTTTGAGTGTGTGTGTGTGAGGAAGACCTGC
TGGAATGAACCCTTGTTGGTTCTTCCCAGGCGTTGATCGTGTAGCGTTTT
GTGCAACTTATTCAGGACGTTGCCGATGCTGTCATGGCCGGAAGGGGTGG
AGTGCAAACAAAACGAATCCTCACAATGAAGCACGACGTTGTGATTGAAT
TGGATGGAGAGAGAGAGCAATGATCGGGCGTCACGATGACCCGGAATGTG
CGTTGGACAAAGAAAATTGTGTACCTGTTCAACATTGAAAGCTGCTTGCG
GCAGGGGGTGTGGGGAAAGGTGTTGTAGGGTGAATTGTGTGGTGGGCTTC
AAACTGTAATTTAGATACCAGAGAGTAGATACCGTCTGTATCGCCAGCTT
TGGGGCTTTGGTGATGCAAGATCGTGTGGAGTGTTCCATGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11691:2..1945+

>mRNA_L-elsbetiae_contig11691.1467.1 ID=mRNA_L-elsbetiae_contig11691.1467.1|Name=mRNA_L-elsbetiae_contig11691.1467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig11691:2..1945+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGGAGTGCATTACCGCTTCGACAGCCACGAGGGCCTTGTCCTTGG
CGAAACCATCGCCGTGCGCAGGCTCCACCAGATGATGGGAGTGCATTACC
GCTTCGACAGCCACGAGGGCCTTGTCCTTGGCGAAACCATCGCCGTGCGC
AGGCTCCACCAGGAGCTCGTGAGTTTCCCCGAGAACCACTTCTACGAGTT
CCGCCTCTTCACTGGTGAAACCATCAAGCTAGACGACGACGGCGAGTTCT
ACATCGACGGGAAACGCTGCTCCGGGGCCGCCTTCACTGGGGTGACCAAC
TGCTAAGAGCTCGTGAGTTTCCCCGAGAACCACTTCTACGAGTTCCGCCT
CTTCACTGGTGAAACCATCAAGCTAGACGACGACGGCGAGTTCTACATCG
ACGGGAAACGCTGCTCCGGGGCCGCCTTCACTGGGGTGACCAACTGCTAA
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