mRNA_L-elsbetiae_contig11690.1466.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11690.1466.1
Unique NamemRNA_L-elsbetiae_contig11690.1466.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11690.1466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11690contigL-elsbetiae_contig11690:2..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11690.1466.1prot_L-elsbetiae_contig11690.1466.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11690 54..389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.2392967-UTR-L-elsbetiae_contig11690:1..531622815371.2392967-UTR-L-elsbetiae_contig11690:1..53Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11690 2..53 +
1691682866.1849744-UTR-L-elsbetiae_contig11690:1..531691682866.1849744-UTR-L-elsbetiae_contig11690:1..53Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11690 2..53 +
1622815371.2600124-UTR-L-elsbetiae_contig11690:389..5921622815371.2600124-UTR-L-elsbetiae_contig11690:389..592Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11690 390..592 +
1691682866.2040226-UTR-L-elsbetiae_contig11690:389..5921691682866.2040226-UTR-L-elsbetiae_contig11690:389..592Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11690 390..592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815371.2507312-CDS-L-elsbetiae_contig11690:53..3891622815371.2507312-CDS-L-elsbetiae_contig11690:53..389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11690 54..389 +
1691682866.194942-CDS-L-elsbetiae_contig11690:53..3891691682866.194942-CDS-L-elsbetiae_contig11690:53..389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11690 54..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11690.1466.1

>prot_L-elsbetiae_contig11690.1466.1 ID=prot_L-elsbetiae_contig11690.1466.1|Name=mRNA_L-elsbetiae_contig11690.1466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MQTTMKKNNRRSSLDKTVPLTSQAAAAAALAMLIMVLPRETPEASEAPEA
SEEPEAPEASEAPTRTTKTTKTTWSTEKAARTTINNRKKITRIMFDGGTC
CNQSQIKHVHM*
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mRNA from alignment at L-elsbetiae_contig11690:2..592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11690.1466.1 ID=mRNA_L-elsbetiae_contig11690.1466.1|Name=mRNA_L-elsbetiae_contig11690.1466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=591bp|location=Sequence derived from alignment at L-elsbetiae_contig11690:2..592+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCCCAACATCAGCAGACTGTTGGGCGGTGATTGGGAACCTGAACCAAT
CTATGCAGACCACTATGAAGAAAAACAACCGTCGTTCCAGCCTGGACAAG
ACGGTGCCTCTGACGTCGCAAGCAGCAGCAGCAGCAGCACTAGCGATGTT
AATTATGGTACTGCCGAGGGAAACACCGGAGGCATCGGAGGCACCGGAGG
CATCGGAGGAACCGGAGGCACCGGAGGCTTCGGAGGCTCCGACGAGGACG
ACGAAGACGACGAAGACGACGTGGTCGACAGAGAAGGCAGCGAGAACGAC
GATCAACAACCGGAAGAAGATAACACGAATCATGTTCGATGGTGGCACAT
GCTGCAATCAATCCCAAATAAAGCACGTACATATGTGAATCATTGATTGA
TGACTACATTTAGATGCGATCATGTTCCGTACGTGTCGTGGAGTGCTTCG
AATGAACACCTACCGGGCGTTGGGAAGTTTGGCAAGGCGGAAGCTAGTTT
GGCTACACGGGCTGTCCCCACCCCGGCGCGCGCTCCTAGGTTAGTTTACC
GTGGGCACACATGTGTGTCAGCGTGGCCGGCACACCCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11690:2..592+

>mRNA_L-elsbetiae_contig11690.1466.1 ID=mRNA_L-elsbetiae_contig11690.1466.1|Name=mRNA_L-elsbetiae_contig11690.1466.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig11690:2..592+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGACCACTATGAAGAAAAACAACCGTCGTTCCAGCCTGGACAAGAC
GGTGCCTCTGACGTCGCAAGCAGCAGCAGCAGCAGCACTAGCGATGTTAA
TTATGGTACTGCCGAGGGAAACACCGGAGGCATCGGAGGCACCGGAGGCA
TCGGAGGAACCGGAGGCACCGGAGGCTTCGGAGGCTCCGACGAGGACGAC
GAAGACGACGAAGACGACGTGGTCGACAGAGAAGGCAGCGAGAACGACGA
TCAACAACCGGAAGAAGATAACACGAATCATGTTCGATGGTGGCACATGC
TGCAATCAATCCCAAATAAAGCACGTACATATGTGAATGCAGACCACTAT
GAAGAAAAACAACCGTCGTTCCAGCCTGGACAAGACGGTGCCTCTGACGT
CGCAAGCAGCAGCAGCAGCAGCACTAGCGATGTTAATTATGGTACTGCCG
AGGGAAACACCGGAGGCATCGGAGGCACCGGAGGCATCGGAGGAACCGGA
GGCACCGGAGGCTTCGGAGGCTCCGACGAGGACGACGAAGACGACGAAGA
CGACGTGGTCGACAGAGAAGGCAGCGAGAACGACGATCAACAACCGGAAG
AAGATAACACGAATCATGTTCGATGGTGGCACATGCTGCAATCAATCCCA
AATAAAGCACGTACATATGTGA
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