mRNA_L-elsbetiae_contig11687.1462.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11687.1462.1
Unique NamemRNA_L-elsbetiae_contig11687.1462.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11687.1462.1 vs. uniprot
Match: D7FMV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV0_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.430e-85
Identity = 211/265 (79.62%), Postives = 225/265 (84.91%), Query Frame = 2 
Query:    2 GSTLGLVTRTALGAWSLSPLRVVLRRERALPVPRAHDRDGDRGGATAASPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAETVP------EEFHRQYTLALSAVEGAGWSGTWVFRVTHDVETDDVWFETRLAQRTGAFGATAGGDQAGRVTRVNQDMLARANKHAAVLRKREEQFTRVSSLARAHAKDAKELARDRILNPDKYKRVHRYMREDSHTSGGARARPARWGEERRRNDIRLK 778
            GSTLGL+TR ALG WSLSPLRVVL+RER L VPR+ D   D  GA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            E  HRQYTLALSAVEGAGWSGTWVFRVT D ET++VWFET+L+QR G+FG TAGGDQ  RVTRVNQDMLARAN+H+AVLR REEQFTRVSSLAR+ AKDAK+LARDRIL+PDKYKRVHRYMREDSHT+GGA ARPARWGEERRRNDIRLK
Sbjct:  314 GSTLGLLTRPALGTWSLSPLRVVLKRERTLAVPRSDD---DGHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERHHRQYTLALSAVEGAGWSGTWVFRVTLDAETEEVWFETKLSQRKGSFGTTAGGDQLVRVTRVNQDMLARANRHSAVLRAREEQFTRVSSLARSRAKDAKDLARDRILHPDKYKRVHRYMREDSHTTGGASARPARWGEERRRNDIRLK 575
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11687.1462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMV0_ECTSI1.430e-8579.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11687contigL-elsbetiae_contig11687:2032..5545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size862
Cds size252
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.7600965-UTR-L-elsbetiae_contig11687:2031..23771622815370.7600965-UTR-L-elsbetiae_contig11687:2031..2377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 2032..2377 +
1691682865.8684926-UTR-L-elsbetiae_contig11687:2031..23771691682865.8684926-UTR-L-elsbetiae_contig11687:2031..2377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 2032..2377 +
1622815370.7727802-UTR-L-elsbetiae_contig11687:2634..27871622815370.7727802-UTR-L-elsbetiae_contig11687:2634..2787Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 2635..2787 +
1691682865.8799667-UTR-L-elsbetiae_contig11687:2634..27871691682865.8799667-UTR-L-elsbetiae_contig11687:2634..2787Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 2635..2787 +
1622815370.7833662-UTR-L-elsbetiae_contig11687:3917..39471622815370.7833662-UTR-L-elsbetiae_contig11687:3917..3947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 3918..3947 +
1691682865.895406-UTR-L-elsbetiae_contig11687:3917..39471691682865.895406-UTR-L-elsbetiae_contig11687:3917..3947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 3918..3947 +
1622815370.8409648-UTR-L-elsbetiae_contig11687:5464..55451622815370.8409648-UTR-L-elsbetiae_contig11687:5464..5545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 5465..5545 +
1691682865.9299953-UTR-L-elsbetiae_contig11687:5464..55451691682865.9299953-UTR-L-elsbetiae_contig11687:5464..5545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11687 5465..5545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.7968514-CDS-L-elsbetiae_contig11687:3947..40091622815370.7968514-CDS-L-elsbetiae_contig11687:3947..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11687 3948..4009 +
1691682865.9033163-CDS-L-elsbetiae_contig11687:3947..40091691682865.9033163-CDS-L-elsbetiae_contig11687:3947..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11687 3948..4009 +
1622815370.8108995-CDS-L-elsbetiae_contig11687:4469..45731622815370.8108995-CDS-L-elsbetiae_contig11687:4469..4573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11687 4470..4573 +
1691682865.9111176-CDS-L-elsbetiae_contig11687:4469..45731691682865.9111176-CDS-L-elsbetiae_contig11687:4469..4573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11687 4470..4573 +
1622815370.824141-CDS-L-elsbetiae_contig11687:5378..54641622815370.824141-CDS-L-elsbetiae_contig11687:5378..5464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11687 5379..5464 +
1691682865.9213614-CDS-L-elsbetiae_contig11687:5378..54641691682865.9213614-CDS-L-elsbetiae_contig11687:5378..5464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11687 5379..5464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11687.1462.1prot_L-elsbetiae_contig11687.1462.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11687 3948..5464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11687.1462.1

>prot_L-elsbetiae_contig11687.1462.1 ID=prot_L-elsbetiae_contig11687.1462.1|Name=mRNA_L-elsbetiae_contig11687.1462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MLARANKHAAVLRKREEQFTRVSSLARAHAKDAKELARDRILNPDKYKRV
HRYMREDSHTSGGARARPARWGEERRRNDIRLK*
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mRNA from alignment at L-elsbetiae_contig11687:2032..5545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11687.1462.1 ID=mRNA_L-elsbetiae_contig11687.1462.1|Name=mRNA_L-elsbetiae_contig11687.1462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3514bp|location=Sequence derived from alignment at L-elsbetiae_contig11687:2032..5545+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTTCGACCCTGGGACTGGTGACCCGGACAGCGCTGGGCGCTTGGTCCC
TCTCTCCCCTGAGGGTCGTGCTTCGCCGCGAGCGGGCGCTACCGGTGCCT
CGCGCTCACGACCGCGACGGCGATAGGGGCGGCGCGACTGCTGCCTCCCC
CGTCGGCGGGGGCCGCCAAGGTAGTAGGAGCAGCAGCAGCAGGAAGAGGA
GCAGTAGGAGCAGGAGCACTGGGGGGAGCAGCCGGAGGAGAAGGCGGAGG
GGCAAGAGTGGCAGTAGGAGGGGAGATGAGGAGGAACGAGATGAGGCAAA
AGACGAAGAGGAAGCCGAGACAGTTCCGGAGGAATTTCACCGCCAGGTGT
GTGGGTGGTTGTGGGTTGGTTAGTTTTGTTGGCGCCGGCGGCACTGTCCG
GCTGATCAATCGCTAGGCGCCAATCCTCGCGGGTTAAACACGACAACCCT
TTATAGAATGCGGGGTAAGCATGCATTTGGTTGTGTGCGAGTGTTTCTTT
TTTCGCGTTTTATGCTCACCCAACCCCTCGTAACCGCGCTCTCGTGAAAA
CGATGCGTCCGTGTGATCGCGGAAATGTAAAAAAATAAAATAAAAACATT
TAGTACACGCTGGCGCTGAGTGCGGTCGAGGGCGCAGGATGGTCTGGAAC
GTGGGTGTTTCGAGTTACGCACGACGTGGAGACAGATGACGTCTGGTTCG
AGACTAGGCTGGCGCAGAGGACAGGAGCTTTCGGAGCAACAGCCGGCGGC
GACCAGGTAGGACACAAGGGGCACGTCGACTAGTTTAATGAGGTCTTAGT
TGCCTGCCTGCGTTGAACAGTGTTATTCTCCATTTTGCAGAGGGGCGTAT
GTATGCTTATACCTACGAAGTACGTGCTCTACCGCCGAACGTGTTCTGGT
GCAGCCTGTGCGTTGGAACCATGCTGTATGGTTCCCGGTATGTAGTCGAC
AACAAGGGAGTTATTACCTGCGCTCGTACATTGTCCTGATTGCGCCCCGC
TCATACTGAAAGTATCAAAGTCTGCCCTGCACCCAATGGTGTTGTTGACA
CTGGGACGCTAGCGGTATACACACACCCATCCCGGCTTCTCCAGGACACG
AGCCAGATCGTCGATGCGAGTAGTACAACAGCTGCTGTCGGCTACCCTTG
TGCACGACGGCCTTTGGAATCGGTCGGTCGGCGACCCCGAAAGAAGAACC
AGCACAAAAATACATTAGTGGCATGGAACCAACAGCAGTGGCATCACCTC
CCGCAGCCCGCCGAAGTTGGTGTTGCCACTTGGTTGCGGATTGGAGTTGA
ATACATAGTTGGTGGTGGAGGGTGCTGCTTCGGCGTCGGTCGACAACCCC
CAAAATAAGAAAAGACACTAAACATGCGAAACAAAATAGAGCGCTGCTCG
AGCAAAGCCCCTCATTACAGTAGCCCTCCAGGAAAGGCAGATAGATGCAC
GCACGACCTGCTCCGATATACACACATGTAATCAAACAATCACGTCAAGA
TTGTCCAGTGTTTGGTAGACACCGACAGTGCTCCGTCCCGAACGGGCGCG
GATGATGCGCGGTGCTTAGTTTTATCCACCCTCCGGCGGGAAATGAATAA
TCCTGGATAATCAACCTTCCGCTCGTGATACTTATACCCCGAGCACGTGC
TGGCGGATGCGCGGTCAAGTGCCAAACGACCCGACGAGGCAGATATAGCT
ACCCGCGGCGCAAGCCCAATCTAGGGACCCCCAATACACTAGTGGCTCCC
CGTTGTTCTTGCGAATTTTCTTGCTTTTGTGCGCAAGGAGGCGTTTGCCT
ATGGCTGTGCATGGTGGTGAGTGTTACCCTCAACCCCCCACGGCGCTCGC
TCGCTGCGCGACCCTTTTTGATGCATGTGTGTGCAGGCGGGGCGGGTTAC
TCGAGTGAACCAAGACATGCTGGCAAGGGCCAACAAGCACGCCGCGGTGC
TCCGGAAACGAGAGGAGCAGTTCACCAGGTAGGTGCTTGTGTTGTAATTG
GTGTTGACAGTCCGGTGTTCTTGGTTTGCCGTCGTTGCGGTTATTTTATT
CGCTTGATCAGTCCGTCTAAAACACCCAGCCCACCCAGCCCGTTGGTCGC
AGCAAGGCCGGGCCAAAACGGTTCTTGTAGTGCCAGAAGGAAACATATAC
CTGGGCCTGTGTCCAGTGTTTAATATTGCGCTGAGCACCACCGCGATGAA
AACCATTCATGCTTGACAGATACTTCTATGTGTTATTGTCTTGTTGTCTG
TCTGTGTGTGGTGTAAGCGCGGCGAATAACATCCAGATGCGAGATAGGCT
CGTGTTACCGTTTGCTCTCGTCGTACTCAACCCGCCGTTTCAGCCTTTGT
TATTTTTGTCATGCTGCTTGTCTCTATCGGTTGTTTGTCTACTCCTTTGT
GTGCAACTCGTGCTCTCAACCCCCCACATGGCGAGCAGGGTATCCTCTCT
CGCTAGGGCACATGCGAAGGACGCCAAGGAGCTCGCCCGCGACAGGATAC
TCAACCCGGACAAGTACAAGCGGGTGCACCGCTACATGCGAGGTGATTGA
TCCGCTCAGGCTGGAATGCCCCATCGCCGAGCGTCTCAGGGTATCGACCC
GGGATGCTGTGTTCGTCTTGCCTTTGGTTCACCTTTCCTTCTTTCCCCCT
CGCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCGCTCTCTCTCTCTCTCT
CTCTCTGTCTTCTTCTCTCTCTTTCTCCTTTTGCTCTCTCTCTCCCTCCT
CTTACTCGCTTTGTGTTGTCACTTGTTGTGTAGTCGTGTCATTGTTTTGA
TTGGTCTGGAGCCTTCGCGTGAACGCCATCACTTGGGGGCTTGCGAAGCC
ACCACCACAGAAGTCAAAATCACGGCCAAAGCACCGTCGCGTATGCTGTT
CCGTAACTTGCTTTTTCTGGCTCGTTAATTTCTACTCACCCGCAGTCCTT
CATGGTGCACCTATGCTAAATTGGCATCTCCCCCTTTGTATTCTTGGGGT
TGTTCCCTTCCCCTCCCCCCTCCGCGTGGATAGTAATGCGTCGGTGATGG
CTGAATTTCTCACGCATGCGACCCAGATGAGTAGAACCCCCCTCTCATGT
AGCTCCCATGAAATTGACAAGCTCGAGAATCTGGAGACCCCCCGAATGTT
GGTGTTTCCCTTACTGTATGTAGCCTTGCAGAGATGGGGCTTCTGCTCCT
GTCTTAATGTGCAGGCAACGGTTCGGCGACTACAATAAAACACGTGCAAC
CATTGAATACGCCGCTCTCCCGATTCCGTATTTGTTTTTTTGCGTATTCT
GCCCCCCGCTGCGCGCCCGTGTTATTTGGGTGGCCCCGTTCCCTTAGAGG
ATTCGCACACCTCGGGAGGGGCGAGAGCGAGGCCGGCGAGGTGGGGAGAA
GAGCGTCGGCGCAACGACATCCGTCTCAAATAGTAGGGTGCAGCGCCGGT
CTCGGCCTGGTCTGAATCAATCATTCAACAACATGGGGAGTGTTTGGTGT
GATGGGGACAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11687:2032..5545+

>mRNA_L-elsbetiae_contig11687.1462.1 ID=mRNA_L-elsbetiae_contig11687.1462.1|Name=mRNA_L-elsbetiae_contig11687.1462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig11687:2032..5545+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGCAAGGGCCAACAAGCACGCCGCGGTGCTCCGGAAACGAGAGGA
GCAGTTCACCAGATGCTGGCAAGGGCCAACAAGCACGCCGCGGTGCTCCG
GAAACGAGAGGAGCAGTTCACCAGGGTATCCTCTCTCGCTAGGGCACATG
CGAAGGACGCCAAGGAGCTCGCCCGCGACAGGATACTCAACCCGGACAAG
TACAAGCGGGTGCACCGCTACATGCGAGGGTATCCTCTCTCGCTAGGGCA
CATGCGAAGGACGCCAAGGAGCTCGCCCGCGACAGGATACTCAACCCGGA
CAAGTACAAGCGGGTGCACCGCTACATGCGAGAGGATTCGCACACCTCGG
GAGGGGCGAGAGCGAGGCCGGCGAGGTGGGGAGAAGAGCGTCGGCGCAAC
GACATCCGTCTCAAATAGAGGATTCGCACACCTCGGGAGGGGCGAGAGCG
AGGCCGGCGAGGTGGGGAGAAGAGCGTCGGCGCAACGACATCCGTCTCAA
ATAG
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