mRNA_L-elsbetiae_contig11684.1461.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11684.1461.1
Unique NamemRNA_L-elsbetiae_contig11684.1461.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11684.1461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11684contigL-elsbetiae_contig11684:3447..5169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.7130373-CDS-L-elsbetiae_contig11684:3446..35651622815370.7130373-CDS-L-elsbetiae_contig11684:3446..3565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11684 3447..3565 -
1691682865.8463795-CDS-L-elsbetiae_contig11684:3446..35651691682865.8463795-CDS-L-elsbetiae_contig11684:3446..3565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11684 3447..3565 -
1622815370.7239897-CDS-L-elsbetiae_contig11684:5072..51691622815370.7239897-CDS-L-elsbetiae_contig11684:5072..5169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11684 5073..5169 -
1691682865.8578498-CDS-L-elsbetiae_contig11684:5072..51691691682865.8578498-CDS-L-elsbetiae_contig11684:5072..5169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11684 5073..5169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11684.1461.1prot_L-elsbetiae_contig11684.1461.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11684 3447..5169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11684.1461.1

>prot_L-elsbetiae_contig11684.1461.1 ID=prot_L-elsbetiae_contig11684.1461.1|Name=mRNA_L-elsbetiae_contig11684.1461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
ATAGGGAATATGGETAQRWLGGGRRRGHADEPGAERREECQLGSEGTAEG
ARGHAGKYEEACGGIVTRLREV
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mRNA from alignment at L-elsbetiae_contig11684:3447..5169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11684.1461.1 ID=mRNA_L-elsbetiae_contig11684.1461.1|Name=mRNA_L-elsbetiae_contig11684.1461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1723bp|location=Sequence derived from alignment at L-elsbetiae_contig11684:3447..5169- (Laminarionema elsbetiae ELsaHSoW15)
GCGACTGCAGGCGGCGGAGCAGCGACAGCGACGGGAGGAGAGACTGCTCA
GAGATGGCTTGGAGGCGGCCGGCGAAGAGGCCACGCAGACGAACCAGGTG
ATGACAGTCCCGCCTACAGTCCCGTCGTAGATATTTATTTAACTGTTGAG
ATTGCTCAGAGATGGCTTGGAGGCGGCCGGCGAAGAGGCCAGGCAGACGA
ACCAGGTGGTGACAGTCCCGCCGACAGTCCCGTCGTAGATATTTATTTAA
CTGTCGAGACTGCTTGGAGTAAATTTTGGAGGAGGCCGGCGAAGAGGCCA
GGCAGACGAACCAGGTGATGACAGTCCCGCCGACAGTCCCGTCTTAGATA
TGTATTCAACTGTCGAGGATGCTTGGAGTAAATTTGGAGGCGGCCGGCGA
AGAGGCAGGCAGATCGAACCAGTGATGACAGTCCCGCCGACAGTCCCGTC
GTAGATACTTGGCTGTCGAGATTGCTTGGAGTAAATTTGGAGGCGGCCGG
TGAAGAGGCCAGGCAGATGAACCAGTGATGACAGTCCCGTCGTAGATATT
TATTTAGCTGTCGAGATTGCTTGGAGTACATTTGGAGGCGGCCGGTGAAG
AGGCCAGGCAGATCGAGCCAGTGATGACAGTCCCGCCGACAGTCCCGTCG
TATTTAGCTGTCGAAGAGCGTGTGTGTGTGTGTGTTTTGTGGTTGTGGTG
GTTTTGCTGCTGCCGGTCTGACCTTCGCTGATGCCGCTGCTTTCGCTTCA
TTCGTGTCTCGCCAAAGAAACAAGTAGTAGAAGTAGTTGACGACCCCACG
ACATCACGGGGGGCTGTTTCTCCCTGGAATACATGTTGTTTGACTGGCAG
AGACAGACTTGCAGGGGAGATAGTGAATTCTTCTGACACCTTACGTGTTT
TTCTACTCGGCCGGCCCAGTATGATGTCACTATATGGAATAACGTTTGAA
TCTCACGGAGTCCCGTCTTAGTGTGGGTTAGGTTCCGTTTTTGATTAGCT
GTTTTCCTTTCAAAATAGTACTACAAGTAGTATGATAAAACAAACATAAT
GATACAAAGCCTTACTGTATATCGAAACAGTCCTAAATATACTAGATGTT
TAAAAATAACGATAAGACTAACTGTTTTCCCTTTCAAAATAGTACTAGAT
ATAATAGAAGTAAAAAATAACGGTAAGACTAACTGTTGTCCCTTTCTAAA
CAGTCCTATGCATATAATAGAAGTACATACAAATAACTATAAGACTTACT
GTGTTTCCTATCAAAGCAGTCCTAAATACAAGGGCAAATGGTAATATTAT
AATAACGATATGTAGACCAAGGACGATAGAAGGATCTTTACCCTCTAATT
TACCCGCGCCTTCGACCGAAAATTCGGTCGGAAAGTTTTGATGTGGGAGC
AGTCTATAATACTCTTAAAGTTATGGCCCCGGTTGGTTCTAGTTGCACTG
ACAAATGCACTGCAAAGTGTAGTACCTCCAAGTACACCGCAAGGTGTAGC
ACACGTCTCCACTTGGGGGGACTGTCGCCAAAATACATGGGAAGGACACA
CACACACACAAACACTCCGGCGTAACCCCACATCATTGTCGTGCGGAACG
GCAGGCGCTGAAAGACGAGAAGAATGCCAACTCGGCTCTGAGGGGACTGC
TGAAGGAGCGAGAGGCCATGCTGGAAAATACGAAGAGGCGTGCGGAGGCA
TCGTCACAAGACTCAGAGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11684:3447..5169-

>mRNA_L-elsbetiae_contig11684.1461.1 ID=mRNA_L-elsbetiae_contig11684.1461.1|Name=mRNA_L-elsbetiae_contig11684.1461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig11684:3447..5169- (Laminarionema elsbetiae ELsaHSoW15)
GCGACTGCAGGCGGCGGAGCAGCGACAGCGACGGGAGGAGAGACTGCTCA
GAGATGGCTTGGAGGCGGCCGGCGAAGAGGCCACGCAGACGAACCAGGCG
ACTGCAGGCGGCGGAGCAGCGACAGCGACGGGAGGAGAGACTGCTCAGAG
ATGGCTTGGAGGCGGCCGGCGAAGAGGCCACGCAGACGAACCAGGCGCTG
AAAGACGAGAAGAATGCCAACTCGGCTCTGAGGGGACTGCTGAAGGAGCG
AGAGGCCATGCTGGAAAATACGAAGAGGCGTGCGGAGGCATCGTCACAAG
ACTCAGAGAGGTGGCGCTGAAAGACGAGAAGAATGCCAACTCGGCTCTGA
GGGGACTGCTGAAGGAGCGAGAGGCCATGCTGGAAAATACGAAGAGGCGT
GCGGAGGCATCGTCACAAGACTCAGAGAGGTG
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