mRNA_L-elsbetiae_contig11681.1460.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11681.1460.1
Unique NamemRNA_L-elsbetiae_contig11681.1460.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11681.1460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11681contigL-elsbetiae_contig11681:4855..5943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1091
Cds size594
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.620008-UTR-L-elsbetiae_contig11681:4854..53491622815370.620008-UTR-L-elsbetiae_contig11681:4854..5349Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11681 4855..5349 +
1691682865.8207057-UTR-L-elsbetiae_contig11681:4854..53491691682865.8207057-UTR-L-elsbetiae_contig11681:4854..5349Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11681 4855..5349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.6323626-CDS-L-elsbetiae_contig11681:5349..59431622815370.6323626-CDS-L-elsbetiae_contig11681:5349..5943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11681 5350..5943 +
1691682865.831317-CDS-L-elsbetiae_contig11681:5349..59431691682865.831317-CDS-L-elsbetiae_contig11681:5349..5943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11681 5350..5943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11681.1460.1prot_L-elsbetiae_contig11681.1460.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11681 5350..5943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11681.1460.1

>prot_L-elsbetiae_contig11681.1460.1 ID=prot_L-elsbetiae_contig11681.1460.1|Name=mRNA_L-elsbetiae_contig11681.1460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
MRWGTARTAGDSRHGCCFRFRYDTTRINVYRSYSRSKHCLLAALLRSILC
LYAGYVYYRIVHTTTIIQCNQLLVYVQKVSLAAQVCSISVETICADTLGP
LQEGGRTRYQRCEKMIGPTPNTRETSWPRETSSTLLPQCTYWRRRRKDTQ
PLCSLHRDRLPPLFFEVVAAAEAAAAFAAAAAVMICLEVLIVVLAPRF
back to top

mRNA from alignment at L-elsbetiae_contig11681:4855..5943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11681.1460.1 ID=mRNA_L-elsbetiae_contig11681.1460.1|Name=mRNA_L-elsbetiae_contig11681.1460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1089bp|location=Sequence derived from alignment at L-elsbetiae_contig11681:4855..5943+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCTGTGTGCAACGAGGTCCACCCGTGGTTACTTTTTGAGTTCACGCC
CGCTCCCAGTTGCAGCAACACGCGCGCGCGTAGCGTCGCACGCGCCAACA
GCCGCCAAGACGGGGAGCGGGGTTTGCCCGATAGCGTTCCGAATATCGAT
AGAGAGTCCATAGCCTGGACTATTTAGCAGTCGAATGATGGGGTCTGGGG
TCTTCCACCCGCCCGCAACGTGAAGCAAGCTCATGGAATCGGGGCGAGGG
GATATCATCACGTCGGCATCTACCTCCATCCACGAGAATTCTCGTGATGG
AAACGTGTCTCGCAGACACCGCGATAAACAGGGGGCTCGACCCTGATGGA
TTGTCCAGGCAATTGACGTGCGCGCCCCCCTGTGAGTTAAACCACGCACG
ACCCCATCTCGTAACAGACGGGTTGCGAGGTGGTTTGGGTAATATCCCTG
CTTAAATGGCAGGTTCAGGTCCACTCCGCTGAGCAATGGAAACACATGAG
ATGGGGTACCGCACGGACGGCTGGCGACAGCCGTCATGGCTGTTGTTTCC
GGTTTCGCTATGACACCACACGCATAAACGTATATCGATCATACTCCAGA
AGCAAGCATTGCTTACTTGCAGCTCTACTTCGAAGTATATTATGTTTATA
TGCTGGCTACGTATACTATCGAATTGTTCACACAACAACAATCATCCAAT
GCAACCAACTCCTGGTGTACGTGCAAAAAGTGTCTCTAGCCGCACAGGTG
TGTTCGATCTCTGTTGAAACCATTTGCGCGGACACGCTGGGTCCTCTCCA
AGAGGGCGGGCGAACGAGATACCAGAGATGTGAGAAAATGATTGGACCGA
CACCAAACACGCGAGAGACCTCCTGGCCCAGAGAAACCTCGTCGACACTT
CTACCCCAGTGCACGTATTGGCGTAGACGAAGAAAGGACACGCAGCCTCT
GTGTAGTCTACACCGGGACCGTCTCCCCCCGTTGTTCTTCGAGGTTGTTG
CCGCCGCTGAAGCTGCTGCTGCTTTTGCTGCTGCTGCTGCTGTGATGATC
TGCCTTGAAGTTTTGATCGTTGTGCTTGCTCCACGGTTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11681:4855..5943+

>mRNA_L-elsbetiae_contig11681.1460.1 ID=mRNA_L-elsbetiae_contig11681.1460.1|Name=mRNA_L-elsbetiae_contig11681.1460.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig11681:4855..5943+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATGGGGTACCGCACGGACGGCTGGCGACAGCCGTCATGGCTGTTG
TTTCCGGTTTCGCTATGACACCACACGCATAAACGTATATCGATCATACT
CCAGAAGCAAGCATTGCTTACTTGCAGCTCTACTTCGAAGTATATTATGT
TTATATGCTGGCTACGTATACTATCGAATTGTTCACACAACAACAATCAT
CCAATGCAACCAACTCCTGGTGTACGTGCAAAAAGTGTCTCTAGCCGCAC
AGGTGTGTTCGATCTCTGTTGAAACCATTTGCGCGGACACGCTGGGTCCT
CTCCAAGAGGGCGGGCGAACGAGATACCAGAGATGTGAGAAAATGATTGG
ACCGACACCAAACACGCGAGAGACCTCCTGGCCCAGAGAAACCTCGTCGA
CACTTCTACCCCAGTGCACGTATTGGCGTAGACGAAGAAAGGACACGCAG
CCTCTGTGTAGTCTACACCGGGACCGTCTCCCCCCGTTGTTCTTCGAGGT
TGTTGCCGCCGCTGAAGCTGCTGCTGCTTTTGCTGCTGCTGCTGCTGTGA
TGATCTGCCTTGAAGTTTTGATCGTTGTGCTTGCTCCACGGTTCATGAGA
TGGGGTACCGCACGGACGGCTGGCGACAGCCGTCATGGCTGTTGTTTCCG
GTTTCGCTATGACACCACACGCATAAACGTATATCGATCATACTCCAGAA
GCAAGCATTGCTTACTTGCAGCTCTACTTCGAAGTATATTATGTTTATAT
GCTGGCTACGTATACTATCGAATTGTTCACACAACAACAATCATCCAATG
CAACCAACTCCTGGTGTACGTGCAAAAAGTGTCTCTAGCCGCACAGGTGT
GTTCGATCTCTGTTGAAACCATTTGCGCGGACACGCTGGGTCCTCTCCAA
GAGGGCGGGCGAACGAGATACCAGAGATGTGAGAAAATGATTGGACCGAC
ACCAAACACGCGAGAGACCTCCTGGCCCAGAGAAACCTCGTCGACACTTC
TACCCCAGTGCACGTATTGGCGTAGACGAAGAAAGGACACGCAGCCTCTG
TGTAGTCTACACCGGGACCGTCTCCCCCCGTTGTTCTTCGAGGTTGTTGC
CGCCGCTGAAGCTGCTGCTGCTTTTGCTGCTGCTGCTGCTGTGATGATCT
GCCTTGAAGTTTTGATCGTTGTGCTTGCTCCACGGTTC
back to top