mRNA_L-elsbetiae_contig1168.1458.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1168.1458.1 vs. uniprot
Match: A0A6H5L290_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L290_9PHAE) HSP 1 Score: 351 bits (901), Expect = 1.670e-112 Identity = 206/295 (69.83%), Postives = 234/295 (79.32%), Query Frame = 3 Query: 30 RPRRGMGFSSVVGACFFAAQRVDGFVVPQVPTRCPRTSQSMSVESP-VSRGQLLRELIPAAILGAAILG--PAKPATAALPTAEDYAFGSGSK-KPRAGISTPRQDATDACPDCSLSKRRKEASS---VPRSPEQVKRPETQDDLSTPLPKSSLNPNNPAEVVRAMSGELDRVQALVNKERWGDALSRMRSYPLTTLKSPTLGMGSVGDVARALGVDKSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKNRQPTDLTEPLQLLSDTKKLVDGVSELMGA 893 R R G+ +VV A F+ QRV F V RC R+ +M+V+SP +SR Q+LR +P + AA PA+PA AALPT EDYAFG+GSK R ST Q++ DACPDCSLS+RRK A+S V SP +VKRPE QDDLS PLPKSS+NP+NP EVVRA+SGELDR+Q LVNKERWGDAL+R+RSYPLT LKSPTLGM SVGDVARALGV SKASDILEASMEAGLTLR+VEDVVFSNTRTLEFFNSADYKQVEDLAK+R PTDLTEPLQLLSDTKKLV GV++LMGA Sbjct: 4 RTRLGVALFAVVNA-HFSVQRVGAFAVRSC-ARCMRSQPAMTVDSPPLSRAQMLRA-VPVLVGVAAFHSATPAEPARAALPTTEDYAFGTGSKTSARTSASTQGQESKDACPDCSLSERRKRAASSSAVQSSPSKVKRPEVQDDLSAPLPKSSVNPDNPVEVVRAVSGELDRMQTLVNKERWGDALTRLRSYPLTALKSPTLGMKSVGDVARALGVSNSKASDILEASMEAGLTLRQVEDVVFSNTRTLEFFNSADYKQVEDLAKDRTPTDLTEPLQLLSDTKKLVRGVADLMGA 295
BLAST of mRNA_L-elsbetiae_contig1168.1458.1 vs. uniprot
Match: D7FWN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN3_ECTSI) HSP 1 Score: 301 bits (772), Expect = 1.280e-93 Identity = 183/292 (62.67%), Postives = 206/292 (70.55%), Query Frame = 3 Query: 30 RPRRGMGFSSVVGACFFAAQRVDGFVVPQVPTRCPRTSQSMSVESP-VSRGQLLRELIPAAILGAAILGPA---KPATAALPTAEDYAFGSGSKKPRAGISTPRQDATDACPDCSLSKRRKEASSVPRSPEQVKRPETQDDLSTPLPKSSLNPNNPAEVVRAMSGELDRVQALVNKERWGDALSRMRSYPLTTLKSPTLGMGSVGDVARALGVDKSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKNRQPTDLTEPLQLLSDTKKLVDGVSELMGA 893 R R G+ +VV A F + QRV F V RC R+ +M+V+SP +SR QLLR A++G A A +PA AALPT EDYAFG+GSK VKRPE QD+LS PLPKSS+NP+NP EVVRA+SGELDR+Q LV KERWGDAL+R+RSYPLT LKSPTLGM SVGDV+RALGV SKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAK+R PTDLTEPLQLLSDTKKLV GV++LMGA Sbjct: 26 RTRLGVALFAVVNAPF-SVQRVGAFAVRSC-ARCKRSQPAMTVDSPPLSRAQLLRAF--PALVGVAAFHSATAAEPARAALPTTEDYAFGTGSK--------------------------------------VKRPEVQDELSAPLPKSSVNPDNPVEVVRAVSGELDRMQTLVKKERWGDALTRLRSYPLTALKSPTLGMKSVGDVSRALGVSNSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKDRTPTDLTEPLQLLSDTKKLVGGVADLMGA 275 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1168.1458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1168.1458.1 >prot_L-elsbetiae_contig1168.1458.1 ID=prot_L-elsbetiae_contig1168.1458.1|Name=mRNA_L-elsbetiae_contig1168.1458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp MPRGRPRRGMGFSSVVGACFFAAQRVDGFVVPQVPTRCPRTSQSMSVESPback to top mRNA from alignment at L-elsbetiae_contig1168:21199..26599- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1168.1458.1 ID=mRNA_L-elsbetiae_contig1168.1458.1|Name=mRNA_L-elsbetiae_contig1168.1458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5401bp|location=Sequence derived from alignment at L-elsbetiae_contig1168:21199..26599- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1168:21199..26599- >mRNA_L-elsbetiae_contig1168.1458.1 ID=mRNA_L-elsbetiae_contig1168.1458.1|Name=mRNA_L-elsbetiae_contig1168.1458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig1168:21199..26599- (Laminarionema elsbetiae ELsaHSoW15)back to top |