mRNA_L-elsbetiae_contig11672.1451.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11672.1451.1
Unique NamemRNA_L-elsbetiae_contig11672.1451.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11672.1451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11672contigL-elsbetiae_contig11672:5416..5723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size308
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.9978333-CDS-L-elsbetiae_contig11672:5415..57181622815369.9978333-CDS-L-elsbetiae_contig11672:5415..5718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11672 5416..5718 +
1691682865.4644172-CDS-L-elsbetiae_contig11672:5415..57181691682865.4644172-CDS-L-elsbetiae_contig11672:5415..5718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11672 5416..5718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815370.0090256-UTR-L-elsbetiae_contig11672:5718..57231622815370.0090256-UTR-L-elsbetiae_contig11672:5718..5723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11672 5719..5723 +
1691682865.4835417-UTR-L-elsbetiae_contig11672:5718..57231691682865.4835417-UTR-L-elsbetiae_contig11672:5718..5723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11672 5719..5723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11672.1451.1prot_L-elsbetiae_contig11672.1451.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11672 5416..5718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11672.1451.1

>prot_L-elsbetiae_contig11672.1451.1 ID=prot_L-elsbetiae_contig11672.1451.1|Name=mRNA_L-elsbetiae_contig11672.1451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
PCGSLGIRVADSGPDIKSSKAPLILEDGPLHGKLIRKLAYHGVNKLLRGL
LNTNCRHSVDDYIKPRKHILGSAPGTKRTLLNCFPSRCFWAVYVLVQGLS
*
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mRNA from alignment at L-elsbetiae_contig11672:5416..5723+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11672.1451.1 ID=mRNA_L-elsbetiae_contig11672.1451.1|Name=mRNA_L-elsbetiae_contig11672.1451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=308bp|location=Sequence derived from alignment at L-elsbetiae_contig11672:5416..5723+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTGCGGTTCGCTCGGCATACGCGTTGCCGATAGTGGTCCCGACATCAA
GTCGAGTAAGGCCCCGTTGATTTTGGAGGATGGCCCTCTCCATGGAAAAC
TCATCAGGAAGCTGGCGTATCATGGCGTCAACAAGCTGCTGCGGGGACTT
CTGAATACCAACTGCCGACATTCGGTTGATGACTATATCAAACCCCGCAA
ACACATTTTGGGGTCAGCGCCCGGCACGAAGCGAACGTTGTTGAATTGCT
TCCCGAGTAGGTGCTTTTGGGCTGTTTATGTGCTGGTGCAAGGCCTAAGT
TAGCTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11672:5416..5723+

>mRNA_L-elsbetiae_contig11672.1451.1 ID=mRNA_L-elsbetiae_contig11672.1451.1|Name=mRNA_L-elsbetiae_contig11672.1451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig11672:5416..5723+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTGCGGTTCGCTCGGCATACGCGTTGCCGATAGTGGTCCCGACATCAA
GTCGAGTAAGGCCCCGTTGATTTTGGAGGATGGCCCTCTCCATGGAAAAC
TCATCAGGAAGCTGGCGTATCATGGCGTCAACAAGCTGCTGCGGGGACTT
CTGAATACCAACTGCCGACATTCGGTTGATGACTATATCAAACCCCGCAA
ACACATTTTGGGGTCAGCGCCCGGCACGAAGCGAACGTTGTTGAATTGCT
TCCCGAGTAGGTGCTTTTGGGCTGTTTATGTGCTGGTGCAAGGCCTAAGT
TAGCCGTGCGGTTCGCTCGGCATACGCGTTGCCGATAGTGGTCCCGACAT
CAAGTCGAGTAAGGCCCCGTTGATTTTGGAGGATGGCCCTCTCCATGGAA
AACTCATCAGGAAGCTGGCGTATCATGGCGTCAACAAGCTGCTGCGGGGA
CTTCTGAATACCAACTGCCGACATTCGGTTGATGACTATATCAAACCCCG
CAAACACATTTTGGGGTCAGCGCCCGGCACGAAGCGAACGTTGTTGAATT
GCTTCCCGAGTAGGTGCTTTTGGGCTGTTTATGTGCTGGTGCAAGGCCTA
AGTTAG
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