mRNA_L-elsbetiae_contig11672.1450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11672.1450.1
Unique NamemRNA_L-elsbetiae_contig11672.1450.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11672.1450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11672contigL-elsbetiae_contig11672:3945..4494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11672.1450.1prot_L-elsbetiae_contig11672.1450.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11672 4128..4476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.9325783-UTR-L-elsbetiae_contig11672:3944..41271622815369.9325783-UTR-L-elsbetiae_contig11672:3944..4127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11672 3945..4127 -
1691682865.4267347-UTR-L-elsbetiae_contig11672:3944..41271691682865.4267347-UTR-L-elsbetiae_contig11672:3944..4127Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11672 3945..4127 -
1622815369.9661288-UTR-L-elsbetiae_contig11672:4476..44941622815369.9661288-UTR-L-elsbetiae_contig11672:4476..4494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11672 4477..4494 -
1691682865.4547896-UTR-L-elsbetiae_contig11672:4476..44941691682865.4547896-UTR-L-elsbetiae_contig11672:4476..4494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11672 4477..4494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.9434311-CDS-L-elsbetiae_contig11672:4127..42191622815369.9434311-CDS-L-elsbetiae_contig11672:4127..4219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11672 4128..4219 -
1691682865.4361794-CDS-L-elsbetiae_contig11672:4127..42191691682865.4361794-CDS-L-elsbetiae_contig11672:4127..4219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11672 4128..4219 -
1622815369.9537842-CDS-L-elsbetiae_contig11672:4250..44761622815369.9537842-CDS-L-elsbetiae_contig11672:4250..4476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11672 4251..4476 -
1691682865.4452403-CDS-L-elsbetiae_contig11672:4250..44761691682865.4452403-CDS-L-elsbetiae_contig11672:4250..4476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11672 4251..4476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11672.1450.1

>prot_L-elsbetiae_contig11672.1450.1 ID=prot_L-elsbetiae_contig11672.1450.1|Name=mRNA_L-elsbetiae_contig11672.1450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MRRDCRIYIGQRAERSGLAQPHVNVVAPEYSLGGYTESGDFGGGSWVRTS
RGGVRRRVLHRQLRTRGRRRIKAPRATAAAGVATAATTATEGVQRWRRGR
WTRRS*
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mRNA from alignment at L-elsbetiae_contig11672:3945..4494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11672.1450.1 ID=mRNA_L-elsbetiae_contig11672.1450.1|Name=mRNA_L-elsbetiae_contig11672.1450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=550bp|location=Sequence derived from alignment at L-elsbetiae_contig11672:3945..4494- (Laminarionema elsbetiae ELsaHSoW15)
TGCGGTCAGTATGGTCACATGCGACGCGACTGCCGCATCTACATCGGTCA
ACGGGCGGAGCGTAGCGGTCTCGCCCAGCCGCACGTGAACGTCGTCGCTC
CCGAGTATTCGCTTGGCGGGTACACCGAGAGCGGCGATTTCGGTGGTGGA
TCTTGGGTGAGGACATCCCGTGGAGGGGTCCGCAGGAGGGTGCTGCATCG
TCAACTGCGAACACGGGGGCGACGGCGTATCAAAGCACCCAGGGGCAATA
GCAGCAACAGCAGCAACAGGAGCAGCAACAGCAGCAGCAGGAGTAGCAAC
AGCAGCAACCACAGCAACAGAGGGCGTACAGCGGTGGAGGCGCGGCCGGT
GGACGCGGCGGAGCTGAATGGTCCACAACGGACTACTGGAGTGGACATCA
TGGTGCTGAGCACGGGGGCGGGGGCGGCGGGGATGAGGGGGACTACGTCA
TACACCCTGGAGTCGTTGACGGCAGTGGCATGGGTCTACTGGCGTGTACC
TTCGGGGGTGCTGCGGAGGAAAAGACGGCGCAGGTTCGGGACCGTCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11672:3945..4494-

>mRNA_L-elsbetiae_contig11672.1450.1 ID=mRNA_L-elsbetiae_contig11672.1450.1|Name=mRNA_L-elsbetiae_contig11672.1450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig11672:3945..4494- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGACGCGACTGCCGCATCTACATCGGTCAACGGGCGGAGCGTAGCGG
TCTCGCCCAGCCGCACGTGAACGTCGTCGCTCCCGAGTATTCGCTTGGCG
GGTACACCGAGAGCGGCGATTTCGGTGGTGGATCTTGGGTGAGGACATCC
CGTGGAGGGGTCCGCAGGAGGGTGCTGCATCGTCAACTGCGAACACGGGG
GCGACGGCGTATCAAAGCACCCAGGGATGCGACGCGACTGCCGCATCTAC
ATCGGTCAACGGGCGGAGCGTAGCGGTCTCGCCCAGCCGCACGTGAACGT
CGTCGCTCCCGAGTATTCGCTTGGCGGGTACACCGAGAGCGGCGATTTCG
GTGGTGGATCTTGGGTGAGGACATCCCGTGGAGGGGTCCGCAGGAGGGTG
CTGCATCGTCAACTGCGAACACGGGGGCGACGGCGTATCAAAGCACCCAG
GGCAACAGCAGCAGCAGGAGTAGCAACAGCAGCAACCACAGCAACAGAGG
GCGTACAGCGGTGGAGGCGCGGCCGGTGGACGCGGCGGAGCTGACAACAG
CAGCAGCAGGAGTAGCAACAGCAGCAACCACAGCAACAGAGGGCGTACAG
CGGTGGAGGCGCGGCCGGTGGACGCGGCGGAGCTGA
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