mRNA_L-elsbetiae_contig11671.1449.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11671.1449.1
Unique NamemRNA_L-elsbetiae_contig11671.1449.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11671.1449.1 vs. uniprot
Match: A0A6H5J909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.740e-42
Identity = 98/133 (73.68%), Postives = 106/133 (79.70%), Query Frame = -3 
Query:    1 PETPQQRYQKALKREALKVHAAYRLVSRAAEVVQMAVVLARAAKEFP--GAA---KVPWSSLDGVPLWTLVSGGDEHQRASCLLADLVGPA--GGLPADARNGYARELASACRGFFGSGDRRNFEGVELLRRA 378
            PETPQQR QKALKREAL+VHAAYRLVSRAAE V+MA VLARAA      GAA    VPWSSLDGVPLW LV+GGDEH+RAS LLADLVG    G   A++R  YAREL S CRGFFG+GDR+ FEGVELLRRA
Sbjct:  231 PETPQQRNQKALKREALEVHAAYRLVSRAAEAVRMAGVLARAAASSAVGGAAAVDNVPWSSLDGVPLWRLVTGGDEHRRASFLLADLVGATTKGNNNAESRRDYARELGSWCRGFFGAGDRQTFEGVELLRRA 363
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BLAST of mRNA_L-elsbetiae_contig11671.1449.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.930e-22
Identity = 60/88 (68.18%), Postives = 65/88 (73.86%), Query Frame = -2 
Query:  629 AACGVPNQTVRARALDAALMNCKPPDFSSPGQSTAGGAGEA----GRMAM--GGVIMG*KFANSAFLNGLQLFVGRVMRPFWFLPVVV 874
            AA GVP+ TVRARALDAALM CKPP FSSPGQ   GG        G +A   GGVIMG KF NSA  NGLQLF+GR++RPFWFLPVVV
Sbjct:  749 AANGVPSHTVRARALDAALMICKPPGFSSPGQPAGGGIXXXXXXXGGVAATAGGVIMGEKFTNSALHNGLQLFIGRLLRPFWFLPVVV 836
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11671.1449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J909_9PHAE2.740e-4273.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M6_ECTSI2.930e-2268.18Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11671contigL-elsbetiae_contig11671:1324..2414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size932
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11671.1449.1prot_L-elsbetiae_contig11671.1449.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11671 1607..2414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.422475-UTR-L-elsbetiae_contig11671:1323..13761622815369.422475-UTR-L-elsbetiae_contig11671:1323..1376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11671 1324..1376 -
1691682865.372253-UTR-L-elsbetiae_contig11671:1323..13761691682865.372253-UTR-L-elsbetiae_contig11671:1323..1376Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11671 1324..1376 -
1622815369.4348228-UTR-L-elsbetiae_contig11671:1390..16061622815369.4348228-UTR-L-elsbetiae_contig11671:1390..1606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11671 1391..1606 -
1691682865.382479-UTR-L-elsbetiae_contig11671:1390..16061691682865.382479-UTR-L-elsbetiae_contig11671:1390..1606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11671 1391..1606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.446674-CDS-L-elsbetiae_contig11671:1606..17181622815369.446674-CDS-L-elsbetiae_contig11671:1606..1718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11671 1607..1718 -
1691682865.3914928-CDS-L-elsbetiae_contig11671:1606..17181691682865.3914928-CDS-L-elsbetiae_contig11671:1606..1718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11671 1607..1718 -
1622815369.4578855-CDS-L-elsbetiae_contig11671:1863..24141622815369.4578855-CDS-L-elsbetiae_contig11671:1863..2414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11671 1864..2414 -
1691682865.402258-CDS-L-elsbetiae_contig11671:1863..24141691682865.402258-CDS-L-elsbetiae_contig11671:1863..2414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11671 1864..2414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11671.1449.1

>prot_L-elsbetiae_contig11671.1449.1 ID=prot_L-elsbetiae_contig11671.1449.1|Name=mRNA_L-elsbetiae_contig11671.1449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
RSAQELNALEIPPVPGPEEPAAGGGELPGVAVASVRGEAARRPHQVCEQA
RRPLVLVAAGHERPQRDAVEGGPRDLGGAGELFGRAGEHHGHLDNLRRPG
HEPVRRVHLQCLPLERLLVPLLRGLRLLLLRRRRRLLLLLLSHRHHCCAP
RTARHRHPSPARHHATVPKKPAQSGARLRRLRRLSRTMTNAPRSSRCRRR
RAWSRWRAARRPPAGTRTAA*
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mRNA from alignment at L-elsbetiae_contig11671:1324..2414-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11671.1449.1 ID=mRNA_L-elsbetiae_contig11671.1449.1|Name=mRNA_L-elsbetiae_contig11671.1449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1091bp|location=Sequence derived from alignment at L-elsbetiae_contig11671:1324..2414- (Laminarionema elsbetiae ELsaHSoW15)
CGCTCGGCGCAGGAGCTCAACGCCCTCGAAATTCCGCCGGTCCCCGGACC
CGAAGAACCCGCGGCAGGCGGAGGCGAGCTCCCTGGCGTAGCCGTTGCGA
GCGTCCGCGGGGAGGCCGCCCGCCGGCCCCACCAGGTCTGCGAGCAGGCA
CGACGCCCGCTGGTGCTCGTCGCCGCCGGACACGAGCGTCCACAGCGGGA
CGCCGTCGAGGGAGGACCACGGGACCTTGGCGGCGCCGGGGAACTCTTTG
GCCGCGCGGGCGAGCACCACGGCCATCTGGACAACCTCCGCCGCCCGGGA
CACGAGCCGGTACGCCGCGTGCACCTTCAGTGCCTCCCGCTTGAGCGCCT
TCTGGTACCGCTGCTGCGGGGTCTCCGGCTTCTGCTGTTGCGGCGGCGGC
GGCGGCTGCTTCTGCTGCTGCTGAGCCACCGCCATCACTGCTGTGCCCCC
CGCACCGCCCGCCACCGGCACCCGTCCCCGGCCCGCCATCATGCCACCGT
TCCCAAGAAGCCCGCCCAGAGCGGTGCCCGTCTGCGCCGTCTGCGCCGTC
TGCGCCGCCGCCGCCGCCGCGACCGCCACCGCCACCGCCTTCGCCTCCTT
GCTCGCCAGCGCCGCGAGGTCTTCGCCCACGGTGCGGGGGAACGCGACGC
GGATGCTCACCCGCAGGGCCTCGAGCGGGGCGCGCGGGGTCTCCAGATCC
CGGACGATGACGAACGCCCCCCGCTCTTCGCGCTGCCGTCGGCGGCGCGC
TTGGAGCCGCTGGCGGGCGGCGCGACGACCACCGGCAGGAACCAGAACGG
CCGCATGACGCGGCCGACGAACAGCTGGAGCCCGTTGAGGAAGGCGCTGT
TCGCGAACTTCTACCCCATTATGACGCCCCCCATGGCCATCCTGCCCGCC
TCGCCTGCCCCGCCCGCCGTCGACTGCCCCGGGCTGCTGAAGTCCGGGGG
TTTGCAGTTCATTAGCGCCGCGTCTAGCGCGCGGGCGCGCACCGTCTGGT
TCGGGACGCCGCAAGCAGCCAGGGGCGGGGGCCCGAAGGCGGGGGCAGGC
CGTCACCGCCGCTGCCAGCGGCCGGCCCGGTGCCGCCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11671:1324..2414-

>mRNA_L-elsbetiae_contig11671.1449.1 ID=mRNA_L-elsbetiae_contig11671.1449.1|Name=mRNA_L-elsbetiae_contig11671.1449.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig11671:1324..2414- (Laminarionema elsbetiae ELsaHSoW15)
CGCTCGGCGCAGGAGCTCAACGCCCTCGAAATTCCGCCGGTCCCCGGACC
CGAAGAACCCGCGGCAGGCGGAGGCGAGCTCCCTGGCGTAGCCGTTGCGA
GCGTCCGCGGGGAGGCCGCCCGCCGGCCCCACCAGGTCTGCGAGCAGGCA
CGACGCCCGCTGGTGCTCGTCGCCGCCGGACACGAGCGTCCACAGCGGGA
CGCCGTCGAGGGAGGACCACGGGACCTTGGCGGCGCCGGGGAACTCTTTG
GCCGCGCGGGCGAGCACCACGGCCATCTGGACAACCTCCGCCGCCCGGGA
CACGAGCCGGTACGCCGCGTGCACCTTCAGTGCCTCCCGCTTGAGCGCCT
TCTGGTACCGCTGCTGCGGGGTCTCCGGCTTCTGCTGTTGCGGCGGCGGC
GGCGGCTGCTTCTGCTGCTGCTGAGCCACCGCCATCACTGCTGTGCCCCC
CGCACCGCCCGCCACCGGCACCCGTCCCCGGCCCGCCATCATGCCACCGT
TCCCAAGAAGCCCGCCCAGAGCGGTGCCCGTCTGCGCCGTCTGCGCCGTC
TCGCTCGGCGCAGGAGCTCAACGCCCTCGAAATTCCGCCGGTCCCCGGAC
CCGAAGAACCCGCGGCAGGCGGAGGCGAGCTCCCTGGCGTAGCCGTTGCG
AGCGTCCGCGGGGAGGCCGCCCGCCGGCCCCACCAGGTCTGCGAGCAGGC
ACGACGCCCGCTGGTGCTCGTCGCCGCCGGACACGAGCGTCCACAGCGGG
ACGCCGTCGAGGGAGGACCACGGGACCTTGGCGGCGCCGGGGAACTCTTT
GGCCGCGCGGGCGAGCACCACGGCCATCTGGACAACCTCCGCCGCCCGGG
ACACGAGCCGGTACGCCGCGTGCACCTTCAGTGCCTCCCGCTTGAGCGCC
TTCTGGTACCGCTGCTGCGGGGTCTCCGGCTTCTGCTGTTGCGGCGGCGG
CGGCGGCTGCTTCTGCTGCTGCTGAGCCACCGCCATCACTGCTGTGCCCC
CCGCACCGCCCGCCACCGGCACCCGTCCCCGGCCCGCCATCATGCCACCG
TTCCCAAGAAGCCCGCCCAGAGCGGTGCCCGTCTGCGCCGTCTGCGCCGT
CTATCCCGGACGATGACGAACGCCCCCCGCTCTTCGCGCTGCCGTCGGCG
GCGCGCTTGGAGCCGCTGGCGGGCGGCGCGACGACCACCGGCAGGAACCA
GAACGGCCGCATGAATCCCGGACGATGACGAACGCCCCCCGCTCTTCGCG
CTGCCGTCGGCGGCGCGCTTGGAGCCGCTGGCGGGCGGCGCGACGACCAC
CGGCAGGAACCAGAACGGCCGCATGA
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