mRNA_L-elsbetiae_contig11671.1448.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11671.1448.1
Unique NamemRNA_L-elsbetiae_contig11671.1448.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11671.1448.1 vs. uniprot
Match: A0A6H5J9W8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.110e-10
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 LPVCIANFNHVDWAREQSSEGDCLAAMRFLNLGFPSPPPSDLLTFATPPRFSTTTLADVLAL 186
            L  C+ +F  VDWAREQ  E +C+AAMRFL+ G PSPPP DLLT   P R  +  L DVLAL
Sbjct:  450 LRDCVQSFRAVDWAREQQQESECVAAMRFLSRGSPSPPPPDLLTLDAPLR--SPRLDDVLAL 509
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BLAST of mRNA_L-elsbetiae_contig11671.1448.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.150e-10
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 LPVCIANFNHVDWAREQSSEGDCLAAMRFLNLGFPSPPPSDLLTFATPPRFSTTTLADVLAL 186
            L  C+ +F  VDWAREQ  E +C+AAMRFL+ G PSPPP DLLT   P R  +  L DVLAL
Sbjct: 1464 LRDCVQSFRAVDWAREQQQESECVAAMRFLSRGSPSPPPPDLLTLDAPLR--SPRLDDVLAL 1523
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BLAST of mRNA_L-elsbetiae_contig11671.1448.1 vs. uniprot
Match: A0A6H5K119_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K119_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.570e-10
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 LPVCIANFNHVDWAREQSSEGDCLAAMRFLNLGFPSPPPSDLLTFATP---PRFSTTTLADVLAL 186
            L  C+ +F  VDWAREQ  + +C+AAMRFL+ G PSPPP DLLT   P   PRF      DVLAL
Sbjct:  344 LRDCVQSFRAVDWAREQQQDSECVAAMRFLSRGSPSPPPPDLLTLVAPLRSPRFD-----DVLAL 403
[Close]
BLAST of mRNA_L-elsbetiae_contig11671.1448.1 vs. uniprot
Match: A0A6H5KKB3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.160e-7
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 LPVCIANFNHVDWAREQSSEGDC----LAAMRFLNLGFPSPPPSDLLTFATPPRFSTTTLADVLAL 186
            L  C+ +F  VDWAREQ  E +C    +AAMRFL+ G PSPP   LLT   PPR  +  L D+LAL
Sbjct:  213 LRDCVQSFRAVDWAREQQQESECESECVAAMRFLSRGSPSPPSPHLLTLDAPPR--SPRLDDLLAL 276
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11671.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J9W8_9PHAE1.110e-1058.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JK47_9PHAE1.150e-1058.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K119_9PHAE2.570e-1055.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKB3_9PHAE1.160e-751.52Integrase catalytic domain-containing protein (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11671contigL-elsbetiae_contig11671:794..1255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.5261776-CDS-L-elsbetiae_contig11671:793..12551622815369.5261776-CDS-L-elsbetiae_contig11671:793..1255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11671 794..1255 +
1691682865.4173126-CDS-L-elsbetiae_contig11671:793..12551691682865.4173126-CDS-L-elsbetiae_contig11671:793..1255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11671 794..1255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11671.1448.1prot_L-elsbetiae_contig11671.1448.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11671 794..1255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11671.1448.1

>prot_L-elsbetiae_contig11671.1448.1 ID=prot_L-elsbetiae_contig11671.1448.1|Name=mRNA_L-elsbetiae_contig11671.1448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
LPVCIANFNHVDWAREQSSEGDCLAAMRFLNLGFPSPPPSDLLTFATPPR
FSTTTLADVLALMRRKGRQTLLRRRTAAAAAEELATRETTIVRRRRVGEE
SLVFRSRGGGRSSDRAFRGSLCSSTRWAAAAAVTRRLTRPPTRRPSPMAP
APRR
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mRNA from alignment at L-elsbetiae_contig11671:794..1255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11671.1448.1 ID=mRNA_L-elsbetiae_contig11671.1448.1|Name=mRNA_L-elsbetiae_contig11671.1448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig11671:794..1255+ (Laminarionema elsbetiae ELsaHSoW15)
CTACCTGTCTGCATTGCCAACTTTAATCATGTGGATTGGGCCCGGGAGCA
AAGCAGTGAGGGGGATTGTTTGGCGGCCATGAGGTTCCTCAATTTAGGAT
TCCCTTCGCCGCCGCCGTCAGATTTGTTGACCTTTGCGACTCCTCCGCGC
TTTTCTACTACGACTCTTGCAGATGTGCTGGCTCTGATGCGGCGAAAGGG
GAGGCAGACGTTGTTGCGGCGGCGGACCGCGGCAGCAGCGGCGGAGGAGC
TGGCGACCCGGGAGACTACAATAGTACGCCGGAGGCGTGTGGGGGAGGAG
TCCCTCGTGTTCCGCTCACGGGGGGGGGGCAGGTCGTCCGACCGAGCGTT
TCGTGGTTCTCTATGCTCGAGCACCCGCTGGGCGGCGGCGGCGGCGGTGA
CGCGTCGTTTGACCCGGCCGCCGACGAGGAGGCCGTCGCCGATGGCACCC
GCGCCCAGGCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11671:794..1255+

>mRNA_L-elsbetiae_contig11671.1448.1 ID=mRNA_L-elsbetiae_contig11671.1448.1|Name=mRNA_L-elsbetiae_contig11671.1448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig11671:794..1255+ (Laminarionema elsbetiae ELsaHSoW15)
CTACCTGTCTGCATTGCCAACTTTAATCATGTGGATTGGGCCCGGGAGCA
AAGCAGTGAGGGGGATTGTTTGGCGGCCATGAGGTTCCTCAATTTAGGAT
TCCCTTCGCCGCCGCCGTCAGATTTGTTGACCTTTGCGACTCCTCCGCGC
TTTTCTACTACGACTCTTGCAGATGTGCTGGCTCTGATGCGGCGAAAGGG
GAGGCAGACGTTGTTGCGGCGGCGGACCGCGGCAGCAGCGGCGGAGGAGC
TGGCGACCCGGGAGACTACAATAGTACGCCGGAGGCGTGTGGGGGAGGAG
TCCCTCGTGTTCCGCTCACGGGGGGGGGGCAGGTCGTCCGACCGAGCGTT
TCGTGGTTCTCTATGCTCGAGCACCCGCTGGGCGGCGGCGGCGGCGGTGA
CGCGTCGTTTGACCCGGCCGCCGACGAGGAGGCCGTCGCCGATGGCACCC
GCGCCCAGGCGTCTACCTGTCTGCATTGCCAACTTTAATCATGTGGATTG
GGCCCGGGAGCAAAGCAGTGAGGGGGATTGTTTGGCGGCCATGAGGTTCC
TCAATTTAGGATTCCCTTCGCCGCCGCCGTCAGATTTGTTGACCTTTGCG
ACTCCTCCGCGCTTTTCTACTACGACTCTTGCAGATGTGCTGGCTCTGAT
GCGGCGAAAGGGGAGGCAGACGTTGTTGCGGCGGCGGACCGCGGCAGCAG
CGGCGGAGGAGCTGGCGACCCGGGAGACTACAATAGTACGCCGGAGGCGT
GTGGGGGAGGAGTCCCTCGTGTTCCGCTCACGGGGGGGGGGCAGGTCGTC
CGACCGAGCGTTTCGTGGTTCTCTATGCTCGAGCACCCGCTGGGCGGCGG
CGGCGGCGGTGACGCGTCGTTTGACCCGGCCGCCGACGAGGAGGCCGTCG
CCGATGGCACCCGCGCCCAGGCGT
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