mRNA_L-elsbetiae_contig1167.1446.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1167.1446.1
Unique NamemRNA_L-elsbetiae_contig1167.1446.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1167.1446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1167contigL-elsbetiae_contig1167:17375..17814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.2681036-CDS-L-elsbetiae_contig1167:17374..178121622815369.2681036-CDS-L-elsbetiae_contig1167:17374..17812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 17375..17812 +
1691682865.2663226-CDS-L-elsbetiae_contig1167:17374..178121691682865.2663226-CDS-L-elsbetiae_contig1167:17374..17812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 17375..17812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1167.1446.1prot_L-elsbetiae_contig1167.1446.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1167 17375..17812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1167.1446.1

>prot_L-elsbetiae_contig1167.1446.1 ID=prot_L-elsbetiae_contig1167.1446.1|Name=mRNA_L-elsbetiae_contig1167.1446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
LLLPPTTPVPPAAATAAAAAAHDPSREVGFGVRRTGAKFAKRASCPPDTG
EAGESPPPPPLSSSSWRVRVNAAAADRPRFDAAAAAAVEEEAVSGPVRSI
AAGSSSSSSKVMSTTWPPGEDDNDADDDVIYGPTAIQPPPPPPPLS
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mRNA from alignment at L-elsbetiae_contig1167:17375..17814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1167.1446.1 ID=mRNA_L-elsbetiae_contig1167.1446.1|Name=mRNA_L-elsbetiae_contig1167.1446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=440bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:17375..17814+ (Laminarionema elsbetiae ELsaHSoW15)
CTACTACTCCCACCCACAACTCCTGTCCCTCCCGCCGCCGCTACTGCTGC
TGCTGCTGCTGCCCATGATCCAAGCCGGGAAGTCGGCTTCGGCGTTCGGC
GGACTGGTGCGAAATTCGCGAAACGTGCGTCCTGCCCTCCGGACACGGGC
GAAGCCGGTGAGTCGCCGCCGCCGCCGCCGCTGTCGTCATCGTCGTGGAG
GGTGAGGGTAAACGCCGCGGCCGCCGACCGCCCACGTTTCGACGCGGCAG
CGGCGGCTGCTGTAGAGGAAGAAGCCGTGTCGGGACCGGTCAGATCTATC
GCCGCCGGTTCGTCGTCTTCGTCGTCAAAAGTCATGTCCACAACATGGCC
GCCTGGAGAAGATGACAACGACGCGGATGATGACGTCATCTATGGACCGA
CAGCGATCCAGCCCCCCCCCCCCCCCCCCCCGCTCTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1167:17375..17814+

>mRNA_L-elsbetiae_contig1167.1446.1 ID=mRNA_L-elsbetiae_contig1167.1446.1|Name=mRNA_L-elsbetiae_contig1167.1446.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:17375..17814+ (Laminarionema elsbetiae ELsaHSoW15)
CTACTACTCCCACCCACAACTCCTGTCCCTCCCGCCGCCGCTACTGCTGC
TGCTGCTGCTGCCCATGATCCAAGCCGGGAAGTCGGCTTCGGCGTTCGGC
GGACTGGTGCGAAATTCGCGAAACGTGCGTCCTGCCCTCCGGACACGGGC
GAAGCCGGTGAGTCGCCGCCGCCGCCGCCGCTGTCGTCATCGTCGTGGAG
GGTGAGGGTAAACGCCGCGGCCGCCGACCGCCCACGTTTCGACGCGGCAG
CGGCGGCTGCTGTAGAGGAAGAAGCCGTGTCGGGACCGGTCAGATCTATC
GCCGCCGGTTCGTCGTCTTCGTCGTCAAAAGTCATGTCCACAACATGGCC
GCCTGGAGAAGATGACAACGACGCGGATGATGACGTCATCTATGGACCGA
CAGCGATCCAGCCCCCCCCCCCCCCCCCCCCGCTCTCGCTACTACTCCCA
CCCACAACTCCTGTCCCTCCCGCCGCCGCTACTGCTGCTGCTGCTGCTGC
CCATGATCCAAGCCGGGAAGTCGGCTTCGGCGTTCGGCGGACTGGTGCGA
AATTCGCGAAACGTGCGTCCTGCCCTCCGGACACGGGCGAAGCCGGTGAG
TCGCCGCCGCCGCCGCCGCTGTCGTCATCGTCGTGGAGGGTGAGGGTAAA
CGCCGCGGCCGCCGACCGCCCACGTTTCGACGCGGCAGCGGCGGCTGCTG
TAGAGGAAGAAGCCGTGTCGGGACCGGTCAGATCTATCGCCGCCGGTTCG
TCGTCTTCGTCGTCAAAAGTCATGTCCACAACATGGCCGCCTGGAGAAGA
TGACAACGACGCGGATGATGACGTCATCTATGGACCGACAGCGATCCAGC
CCCCCCCCCCCCCCCCCCCGCTCTCG
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