mRNA_L-elsbetiae_contig1167.1445.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1167.1445.1
Unique NamemRNA_L-elsbetiae_contig1167.1445.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1167.1445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1167contigL-elsbetiae_contig1167:16145..17293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1167.1445.1prot_L-elsbetiae_contig1167.1445.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1167 16145..17277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.2151296-CDS-L-elsbetiae_contig1167:16144..164261622815369.2151296-CDS-L-elsbetiae_contig1167:16144..16426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 16145..16426 -
1691682865.2277942-CDS-L-elsbetiae_contig1167:16144..164261691682865.2277942-CDS-L-elsbetiae_contig1167:16144..16426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 16145..16426 -
1622815369.2245998-CDS-L-elsbetiae_contig1167:17154..172771622815369.2245998-CDS-L-elsbetiae_contig1167:17154..17277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 17155..17277 -
1691682865.240163-CDS-L-elsbetiae_contig1167:17154..172771691682865.240163-CDS-L-elsbetiae_contig1167:17154..17277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 17155..17277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.2367063-UTR-L-elsbetiae_contig1167:17277..172931622815369.2367063-UTR-L-elsbetiae_contig1167:17277..17293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1167 17278..17293 -
1691682865.2499287-UTR-L-elsbetiae_contig1167:17277..172931691682865.2499287-UTR-L-elsbetiae_contig1167:17277..17293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1167 17278..17293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1167.1445.1

>prot_L-elsbetiae_contig1167.1445.1 ID=prot_L-elsbetiae_contig1167.1445.1|Name=mRNA_L-elsbetiae_contig1167.1445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MGGAGGAGGAGGTGYSSTQAVGASAARGANGAARGTSPKNNMAAGGDCCG
SSIEVGFEASSPGADPAPDLAPEFEPDVGPEDEASHRLARSAGAGDAAPP
SPVPSTGEMPDRGVEGTTPSPAPAPAPSTGKTPDR
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mRNA from alignment at L-elsbetiae_contig1167:16145..17293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1167.1445.1 ID=mRNA_L-elsbetiae_contig1167.1445.1|Name=mRNA_L-elsbetiae_contig1167.1445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1149bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:16145..17293- (Laminarionema elsbetiae ELsaHSoW15)
GGACAACGAGCAACCGATGGGAGGGGCGGGAGGAGCGGGAGGAGCAGGAG
GAACGGGCTATTCATCTACCCAGGCCGTGGGTGCGAGCGCGGCGAGAGGC
GCGAACGGCGCAGCGCGTGGCACTTCTCCGAAGAACAACGTGCGTGGTGT
GATCGAACCTCAAAGGCAGCGGGGAGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCAGGCGGGTT
GGGGTTGCGTTTTGTTGTTTTTTGGGTTTGCCTGGGGTCACAGACTGCCG
CATGTCCGATCGGTCAGAGCATCTCGTCTGAGACGTACGTAAGAGAGCAC
GTAGTGCCGGTATTTTTCGTCCAAAAGACTTAACCAACCTGCTGTGGGCG
CTGTTCTATGTACATAAATAGCTTGGCCATGTCTTGAAAGTACTAATCGT
GTCCCCCTCTTTCCTTCCTGTTTGGGCCTCGTGCGGCTTATGTATCAGTC
GTGATTTTGCTCGAGACAAATCGCGCTTCCACCCGCCAAGCTACATACGC
GTAACGACGTGAATATTTCCATCGTTCTGCCTCTGCCGGAGCGTTCCGTT
TACCCCCTGTACGTCTCACGTAGCTCCTTGTGCGTGTCCTGCTCGTTTCT
GGCGTTCCGCACTCTTGCAGCACACATTGCTCTTCCGTGACTGACTTGCC
ACCTCACTGGCATAGGTGCACATTTCCTCTTGCACGTCCGCCCTGCCCTC
CATGTCGGACATGCAAAAAAATATCCGCCTTCTGCGGCGATTCCAAGTCT
GCGTTTCTAATCCAACCAGGAGTTTTGTTTTATGTTTTTCTTCCTCGGTT
TCCGTTTGGGCGTGCAGATGGCGGCGGGTGGCGACTGCTGTGGTTCTAGC
ATCGAGGTCGGGTTCGAGGCTTCCTCTCCTGGCGCCGACCCCGCTCCTGA
CCTCGCTCCTGAGTTTGAGCCCGACGTCGGCCCAGAAGATGAAGCCAGCC
ATCGCCTGGCCAGAAGCGCCGGCGCGGGAGACGCGGCGCCGCCGTCGCCG
GTGCCGTCTACGGGGGAGATGCCGGATCGTGGCGTGGAAGGCACGACGCC
GTCGCCGGCCCCGGCGCCGGCGCCGTCCACGGGGAAGACGCCCGACCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1167:16145..17293-

>mRNA_L-elsbetiae_contig1167.1445.1 ID=mRNA_L-elsbetiae_contig1167.1445.1|Name=mRNA_L-elsbetiae_contig1167.1445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:16145..17293- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGGGCGGGAGGAGCGGGAGGAGCAGGAGGAACGGGCTATTCATC
TACCCAGGCCGTGGGTGCGAGCGCGGCGAGAGGCGCGAACGGCGCAGCGC
GTGGCACTTCTCCGAAGAACAACATGGGAGGGGCGGGAGGAGCGGGAGGA
GCAGGAGGAACGGGCTATTCATCTACCCAGGCCGTGGGTGCGAGCGCGGC
GAGAGGCGCGAACGGCGCAGCGCGTGGCACTTCTCCGAAGAACAACATGG
CGGCGGGTGGCGACTGCTGTGGTTCTAGCATCGAGGTCGGGTTCGAGGCT
TCCTCTCCTGGCGCCGACCCCGCTCCTGACCTCGCTCCTGAGTTTGAGCC
CGACGTCGGCCCAGAAGATGAAGCCAGCCATCGCCTGGCCAGAAGCGCCG
GCGCGGGAGACGCGGCGCCGCCGTCGCCGGTGCCGTCTACGGGGGAGATG
CCGGATCGTGGCGTGGAAGGCACGACGCCGTCGCCGGCCCCGGCGCCGGC
GCCGTCCACGGGGAAGACGCCCGACCGAATGGCGGCGGGTGGCGACTGCT
GTGGTTCTAGCATCGAGGTCGGGTTCGAGGCTTCCTCTCCTGGCGCCGAC
CCCGCTCCTGACCTCGCTCCTGAGTTTGAGCCCGACGTCGGCCCAGAAGA
TGAAGCCAGCCATCGCCTGGCCAGAAGCGCCGGCGCGGGAGACGCGGCGC
CGCCGTCGCCGGTGCCGTCTACGGGGGAGATGCCGGATCGTGGCGTGGAA
GGCACGACGCCGTCGCCGGCCCCGGCGCCGGCGCCGTCCACGGGGAAGAC
GCCCGACCGA
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