mRNA_L-elsbetiae_contig1167.1443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1167.1443.1
Unique NamemRNA_L-elsbetiae_contig1167.1443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1167.1443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1167contigL-elsbetiae_contig1167:7978..10874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1195
Cds size1191
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1167.1443.1prot_L-elsbetiae_contig1167.1443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1167 7980..10874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.0795305-CDS-L-elsbetiae_contig1167:7979..82781622815369.0795305-CDS-L-elsbetiae_contig1167:7979..8278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 7980..8278 -
1691682865.1494927-CDS-L-elsbetiae_contig1167:7979..82781691682865.1494927-CDS-L-elsbetiae_contig1167:7979..8278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 7980..8278 -
1622815369.0889063-CDS-L-elsbetiae_contig1167:8545..92211622815369.0889063-CDS-L-elsbetiae_contig1167:8545..9221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 8546..9221 -
1691682865.1597486-CDS-L-elsbetiae_contig1167:8545..92211691682865.1597486-CDS-L-elsbetiae_contig1167:8545..9221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 8546..9221 -
1622815369.0981452-CDS-L-elsbetiae_contig1167:9511..96781622815369.0981452-CDS-L-elsbetiae_contig1167:9511..9678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 9512..9678 -
1691682865.170348-CDS-L-elsbetiae_contig1167:9511..96781691682865.170348-CDS-L-elsbetiae_contig1167:9511..9678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 9512..9678 -
1622815369.1106544-CDS-L-elsbetiae_contig1167:10825..108741622815369.1106544-CDS-L-elsbetiae_contig1167:10825..10874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 10826..10874 -
1691682865.178594-CDS-L-elsbetiae_contig1167:10825..108741691682865.178594-CDS-L-elsbetiae_contig1167:10825..10874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 10826..10874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1167.1443.1

>prot_L-elsbetiae_contig1167.1443.1 ID=prot_L-elsbetiae_contig1167.1443.1|Name=mRNA_L-elsbetiae_contig1167.1443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=397bp
AEGGGADDTLRQSAAPVVPRQLPRPDSGGVANVPQHPRAPSPPAVAESAA
PPPGREMSTAQARELCVQGRSEGADPTRNASRPPLDTAQKQETADQSPPS
VIDAGRPHAEAPASPSETQTALSATRGAQPGGSNAVGATAKTRAAEETAV
AAAAAAAAAGGREDPDDASRAGGARSPTHPSRSPSPAGEERGGVVCANCG
GDGFPRDHGAERSADRTSPSTSGRGRSCQVCLWSPADGRPLQGARCLGAA
AGPAAAAVAEAAGVDAALSTNVAEGRERASAVNSGGGNDRDGVNAKAESA
VERTTPSLAAGWSVATAALNGKRDREETIVGVLRPDSAARPHGAETADGG
GKLRIEKATTPPHAASAKRGKTACSVSPLDILLQRPGVDGTAVGGAG
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mRNA from alignment at L-elsbetiae_contig1167:7978..10874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1167.1443.1 ID=mRNA_L-elsbetiae_contig1167.1443.1|Name=mRNA_L-elsbetiae_contig1167.1443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2897bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:7978..10874- (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGGGTGGAGGGGCCGACGACACACTACGACAGAGTGCAGCACCAGG
TCAGTCGGTCTCGGATTCCTGTGTTTTACGTGTCGGTGAGTTTCAGGCGA
GCCCTGATGTGGTATGGGTTTGTCAGCCAGCCGTGATGCTGCGATTTTTA
ATACGTTCTTTACTCGGTGTCAGCGGCCCACGTCCGACCTGTAAAAAAAT
CGTTCCAGGGCGGTCTGTCGTAGAGATCCATACACTCACCCTCCCGAACC
GTCCCAGGCTGCGGGCGCAAAACCCGCAATCGGTTTAGTTCGCTGGTGAA
CAAGTCGTCCCAGAGGGGGCTTTGTACCTACGCTCTCCGCTTGAGTGGCG
TGAGCGGGTCTGTGTTGTCATTTTGTTTCAGCTTGGGGGGGTGGCGCGGT
AATAGGGCTCTACGTGGACAGGTAGGCTTTGTAAAGAGCCGAACACACGA
GTCCGGCGCTACGTTCTTCGGACCCGAAATAGTTTCCTCGAGTCGGATTG
AGTTTTGTTTATTGATGCCTGTTTGTCGTTATTTATATTTAGGTGTGTTG
GTGAACCTCCATGAGTTCGCGGACCCGAAAACATAGAAAGGGCAGGGTCA
GCGCCGAAAGCTTGAGTAGAAAAAAGCCGTTTTGGATTTTGATGAGGGTT
TGACTACGTATGGACGCGCGCACCCTCTTTGTGAGTCTGTGTGGCATCCA
AGATGTGTGTTGGCCGCGGTGGGTAGCCAGAGCTTTTGCCAAATCTTCTT
TCTGCCAACGTGGTATGCCCACCCGGCCAAGTTGTCCTGCGCTCGACATA
CACGCCCTTGATTGGCCAATCTTATTCTTGCTCTGAGGCTTTCGAGCTTG
CCCTAGTGTTTGAAAGCATGCTCGTTCATTTCTCGCGCACCCAATCCAAC
TCAATCATGCGCCATGCTCGAGAAGCACGACCAGACGGGAGCCAAACCAA
AAATGCAAAGACGGCGCCCCAAAACGTGTACGGCGCCCCATCCACATACC
GTATTGTATCGCGGCACCATATCCAAAGCCTGCATCACGTCGCTTGTGCT
ATATAGACATGATACCTGGTGTGAGTAATGAACCCCCCCCCCCTCCGAAA
TACATGCATAATTGCGCGAGTTAAATCCGACGATCCCGCCACACACACCG
CCTGTGCCCCTTCTGCCTCGCCCGTAAATACCCCCGCGCACAACAGTGGT
GCCACGACAGCTTCCTCGCCCCGATAGCGGCGGCGTCGCTAACGTCCCGC
AACATCCTCGCGCACCTTCGCCGCCGGCGGTGGCCGAGTCTGCCGCTCCA
CCTCCCGGGCGGGAGATGTCGACTGCGCAAGCTCGCGAGCTTTGCGTCCA
GGGAAGGAGTGAGGTGCGCTCGGAACTTCACCTGTCTTGTTGCTGTTGCT
ATTCCTGTTGCCTTTGTTGTTGTTTGCGGACTCTCCAAGGGTGCGATGGC
TGGAGGTCTCCAGCTTTTGGCGGGGCTACGTCTGGTTTCACTGCTTCGTG
AGACGTGCTGTGGGCACATGCCGGCAGCTCGGTTGCCGGGTGGTTGGTTG
CTGCATTTATTTCTTGTGTATCGCCGAAGGTGTTCCCCTCTCAAGCTCAG
GCCGCGTCCACTCTTGTTTGCTCTCCCCCGCTCTTTGATCCGACGAACCC
CAGGGTGCTGACCCCACTCGAAACGCCAGCCGACCACCGTTGGACACGGC
TCAGAAGCAGGAAACCGCTGACCAATCACCGCCGTCGGTTATCGACGCCG
GCCGGCCACACGCGGAGGCTCCAGCGTCGCCGTCAGAGACCCAGACGGCG
CTGTCGGCGACTCGAGGAGCGCAGCCAGGGGGTTCCAATGCTGTCGGTGC
GACGGCAAAAACAAGAGCAGCGGAAGAAACAGCAGTAGCAGCAGCAGCAG
CAGCAGCAGCAGCTGGAGGACGCGAAGACCCCGACGATGCATCCCGTGCG
GGTGGCGCGCGGTCTCCTACTCATCCTTCTCGCTCGCCTTCCCCCGCCGG
AGAAGAGAGAGGCGGCGTGGTTTGCGCAAACTGCGGGGGTGATGGGTTTC
CCCGAGACCACGGCGCCGAACGCTCCGCAGATCGGACGTCGCCGTCAACA
TCAGGCCGCGGCCGCTCCTGCCAGGTTTGTCTCTGGAGCCCCGCCGACGG
TAGACCCCTGCAGGGAGCTCGGTGTCTCGGAGCGGCGGCGGGACCGGCGG
CGGCGGCGGTAGCGGAGGCGGCGGGGGTGGATGCGGCGTTGTCGACGAAC
GTGGCTGAGGGCCGAGAGCGAGCGTCAGCCGTGAACAGCGGGGGCGGGAA
TGATAGAGACGGGGTCAATGCGAAAGCAGGTATGCATGCAGTTGTGCGTT
GTTTGTCTCTTTGGATGCTAACTAGCGGCTGGCTTTGCATGAGTGTTGTG
GTGGGGGTTTGGCTCTCGGTTTCCAGCGCTCAGTGGCTTGCTGCCAGACC
AGGTTTTCACGCGCCAAGTGAAAAGGGACGTTGTTGCTACGCTAGAGTCG
TGTCGCACCCGCGCTCTCCATGTTTACTACCCCTTTCCTGCTTGCCGCCG
CCCCCCCGCGGCGTCCCGATCGTCCCCCCGGTATTTTGTTGGGCAGAGTC
GGCTGTGGAACGGACAACGCCATCACTGGCAGCTGGTTGGTCGGTTGCTA
CTGCGGCTCTCAATGGGAAGCGCGACAGAGAGGAGACGATCGTCGGGGTG
CTTCGGCCGGACTCAGCAGCCCGTCCTCACGGGGCAGAGACGGCGGATGG
TGGCGGCAAGCTGAGGATCGAGAAGGCTACCACGCCGCCTCACGCTGCAA
GCGCGAAGCGCGGCAAGACCGCCTGCAGCGTCAGCCCCCTGGACATCTTA
TTGCAGAGACCGGGGGTAGACGGGACGGCCGTGGGCGGAGCGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1167:7978..10874-

>mRNA_L-elsbetiae_contig1167.1443.1 ID=mRNA_L-elsbetiae_contig1167.1443.1|Name=mRNA_L-elsbetiae_contig1167.1443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2382bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:7978..10874- (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGGGTGGAGGGGCCGACGACACACTACGACAGAGTGCAGCACCAGG
CGGAGGGTGGAGGGGCCGACGACACACTACGACAGAGTGCAGCACCAGTG
GTGCCACGACAGCTTCCTCGCCCCGATAGCGGCGGCGTCGCTAACGTCCC
GCAACATCCTCGCGCACCTTCGCCGCCGGCGGTGGCCGAGTCTGCCGCTC
CACCTCCCGGGCGGGAGATGTCGACTGCGCAAGCTCGCGAGCTTTGCGTC
CAGGGAAGGAGTGAGTGGTGCCACGACAGCTTCCTCGCCCCGATAGCGGC
GGCGTCGCTAACGTCCCGCAACATCCTCGCGCACCTTCGCCGCCGGCGGT
GGCCGAGTCTGCCGCTCCACCTCCCGGGCGGGAGATGTCGACTGCGCAAG
CTCGCGAGCTTTGCGTCCAGGGAAGGAGTGAGGGTGCTGACCCCACTCGA
AACGCCAGCCGACCACCGTTGGACACGGCTCAGAAGCAGGAAACCGCTGA
CCAATCACCGCCGTCGGTTATCGACGCCGGCCGGCCACACGCGGAGGCTC
CAGCGTCGCCGTCAGAGACCCAGACGGCGCTGTCGGCGACTCGAGGAGCG
CAGCCAGGGGGTTCCAATGCTGTCGGTGCGACGGCAAAAACAAGAGCAGC
GGAAGAAACAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGAGGAC
GCGAAGACCCCGACGATGCATCCCGTGCGGGTGGCGCGCGGTCTCCTACT
CATCCTTCTCGCTCGCCTTCCCCCGCCGGAGAAGAGAGAGGCGGCGTGGT
TTGCGCAAACTGCGGGGGTGATGGGTTTCCCCGAGACCACGGCGCCGAAC
GCTCCGCAGATCGGACGTCGCCGTCAACATCAGGCCGCGGCCGCTCCTGC
CAGGTTTGTCTCTGGAGCCCCGCCGACGGTAGACCCCTGCAGGGAGCTCG
GTGTCTCGGAGCGGCGGCGGGACCGGCGGCGGCGGCGGTAGCGGAGGCGG
CGGGGGTGGATGCGGCGTTGTCGACGAACGTGGCTGAGGGCCGAGAGCGA
GCGTCAGCCGTGAACAGCGGGGGCGGGAATGATAGAGACGGGGTCAATGC
GAAAGCAGGGTGCTGACCCCACTCGAAACGCCAGCCGACCACCGTTGGAC
ACGGCTCAGAAGCAGGAAACCGCTGACCAATCACCGCCGTCGGTTATCGA
CGCCGGCCGGCCACACGCGGAGGCTCCAGCGTCGCCGTCAGAGACCCAGA
CGGCGCTGTCGGCGACTCGAGGAGCGCAGCCAGGGGGTTCCAATGCTGTC
GGTGCGACGGCAAAAACAAGAGCAGCGGAAGAAACAGCAGTAGCAGCAGC
AGCAGCAGCAGCAGCAGCTGGAGGACGCGAAGACCCCGACGATGCATCCC
GTGCGGGTGGCGCGCGGTCTCCTACTCATCCTTCTCGCTCGCCTTCCCCC
GCCGGAGAAGAGAGAGGCGGCGTGGTTTGCGCAAACTGCGGGGGTGATGG
GTTTCCCCGAGACCACGGCGCCGAACGCTCCGCAGATCGGACGTCGCCGT
CAACATCAGGCCGCGGCCGCTCCTGCCAGGTTTGTCTCTGGAGCCCCGCC
GACGGTAGACCCCTGCAGGGAGCTCGGTGTCTCGGAGCGGCGGCGGGACC
GGCGGCGGCGGCGGTAGCGGAGGCGGCGGGGGTGGATGCGGCGTTGTCGA
CGAACGTGGCTGAGGGCCGAGAGCGAGCGTCAGCCGTGAACAGCGGGGGC
GGGAATGATAGAGACGGGGTCAATGCGAAAGCAGAGTCGGCTGTGGAACG
GACAACGCCATCACTGGCAGCTGGTTGGTCGGTTGCTACTGCGGCTCTCA
ATGGGAAGCGCGACAGAGAGGAGACGATCGTCGGGGTGCTTCGGCCGGAC
TCAGCAGCCCGTCCTCACGGGGCAGAGACGGCGGATGGTGGCGGCAAGCT
GAGGATCGAGAAGGCTACCACGCCGCCTCACGCTGCAAGCGCGAAGCGCG
GCAAGACCGCCTGCAGCGTCAGCCCCCTGGACATCTTATTGCAGAGACCG
GGGGTAGACGGGACGGCCGTGGGCGGAGCGGGGAGTCGGCTGTGGAACGG
ACAACGCCATCACTGGCAGCTGGTTGGTCGGTTGCTACTGCGGCTCTCAA
TGGGAAGCGCGACAGAGAGGAGACGATCGTCGGGGTGCTTCGGCCGGACT
CAGCAGCCCGTCCTCACGGGGCAGAGACGGCGGATGGTGGCGGCAAGCTG
AGGATCGAGAAGGCTACCACGCCGCCTCACGCTGCAAGCGCGAAGCGCGG
CAAGACCGCCTGCAGCGTCAGCCCCCTGGACATCTTATTGCAGAGACCGG
GGGTAGACGGGACGGCCGTGGGCGGAGCGGGG
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