mRNA_L-elsbetiae_contig1167.1442.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1167.1442.1
Unique NamemRNA_L-elsbetiae_contig1167.1442.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1167.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1167contigL-elsbetiae_contig1167:3024..6389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_002500.1
Exons2
Model size2242
Cds size603
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1167.1442.1prot_L-elsbetiae_contig1167.1442.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1167 4662..6389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.2996879-UTR-L-elsbetiae_contig1167:3023..46611622815369.2996879-UTR-L-elsbetiae_contig1167:3023..4661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1167 3024..4661 -
1691682865.2778485-UTR-L-elsbetiae_contig1167:3023..46611691682865.2778485-UTR-L-elsbetiae_contig1167:3023..4661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1167 3024..4661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815369.311088-CDS-L-elsbetiae_contig1167:4661..48971622815369.311088-CDS-L-elsbetiae_contig1167:4661..4897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 4662..4897 -
1691682865.2893705-CDS-L-elsbetiae_contig1167:4661..48971691682865.2893705-CDS-L-elsbetiae_contig1167:4661..4897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 4662..4897 -
1622815369.320313-CDS-L-elsbetiae_contig1167:6022..63891622815369.320313-CDS-L-elsbetiae_contig1167:6022..6389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 6023..6389 -
1691682865.300209-CDS-L-elsbetiae_contig1167:6022..63891691682865.300209-CDS-L-elsbetiae_contig1167:6022..6389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1167 6023..6389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1167.1442.1

>prot_L-elsbetiae_contig1167.1442.1 ID=prot_L-elsbetiae_contig1167.1442.1|Name=mRNA_L-elsbetiae_contig1167.1442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
LNAVPPPAPPSGNAAPAAPPAALQGRLSSAGDARRISASAVAGVGGAPAP
VAAAAGGKARKEELEKRERQRQREQETARVARREELRRSMMSAEHLHLQF
RSLHGPGAEDRGNDERSRLYLNSGDPTIPDSTPRGPITRGLPLPHDGLFP
DFARQLRFARAGPSTDVARKQQQQQQQGKLHGGGKGKEGVQPKFTGEWRD
*
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mRNA from alignment at L-elsbetiae_contig1167:3024..6389-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1167.1442.1 ID=mRNA_L-elsbetiae_contig1167.1442.1|Name=mRNA_L-elsbetiae_contig1167.1442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3366bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:3024..6389- (Laminarionema elsbetiae ELsaHSoW15)
CTGAACGCCGTGCCGCCGCCGGCGCCGCCGTCGGGCAACGCTGCTCCCGC
TGCTCCTCCGGCCGCGCTTCAGGGTCGGCTCTCGAGCGCCGGCGACGCGC
GGCGCATCTCGGCTTCTGCCGTGGCTGGGGTTGGCGGGGCGCCGGCCCCG
GTTGCGGCGGCCGCTGGAGGCAAGGCCAGGAAGGAAGAGCTGGAGAAGCG
GGAGCGGCAGCGGCAGCGGGAGCAGGAGACAGCTAGGGTCGCCAGGAGGG
AGGAGCTGCGGCGTAGCATGATGAGCGCGGAGCATCTTCACCTTCAGTTC
CGGAGCTTGCACGGGCCCGGTGCGGAGGACCGCGGGAATGACGAGCGGTC
GAGGCTGTACTTGAACTGTGAGCGGTGTTTCGGACTCGTGTTTTGTATCT
TGGGCGTGTTTTGCGTTCGAAAGAAGCGGTGACACGTAGGCCCTGTCGCT
TATTTTCGGTATTCTTGTATGTATGTATGCGTCCCATGCGCTGGATTTTC
TCGAATCACGGGGCCCCAGTCAAGACGAATTTGATATGGTCCGTGCACAA
CAATTTGTCCAAATTTTTCCTGGCGGGGATGACAACTTTTCTCTGCACAC
AGGTGGTTGTTCCGAAATCCGAAAGTATCGGCAAAAGCCCTACTCCCAGG
CATGTATGACGTGACGGAGAGTTTTTTTTGTTTTCATTCCTTGATATTTT
ATCAGAGAAAAACCGGATAAACTTGTTTTGTTTTTATGTATCTGAGAGGT
ACAAGTAGTGTTTGGCTATTCCAAATATCTCAACGGATTTGGACATATCT
CGGAATTTGTTGATACGTGTTTTTTGTTGAACATATTCAAAATTAACGAA
GATATCGGGAGAAAACCGGATTTAGAGGGTCAAGCTGTTTTGTTTAATAC
CATATGAGATAACTGCTTCACCGACTTCAAAATAAACACCGGCAAACGAA
TCCTCTCATCAATCTCTAGACGTCTTTTTTCCTATTCTCCGGGAAAAACC
TGGTTCTCGAGATATTCCACATTTTGTCCGAAAACCATATTTTTTCCTAG
TATTGAACTTTTTCGGCCACACAATGACTTGCGTTTCGTGTGGATGTGTC
AAAAATATTTTTAAACCACGTGTTGCTCCCCTTGCAGTGTGGATCACTAC
CATACCTGAAATGCGGTGTAACTCGTTTTCTTTCGAAAGTTATGACCAAA
AATATCAATTGGACAAATTGTTGTGCACGGACCATATGTAGGTTGGGATG
GTTAAGTGAGAGGAGAGGAACTACTGCTTCGAAGTGTACAGTCTTCGGTG
TATTGCCGGCACGTCAGGCCCCTTTAATCGGTGTAGTCGCCACGTACGAC
TTCGGTTGTTTGCGGCAACATGGTACGTACATTTATGCAGTCCATGTTAG
TACATACACCCTGAAGATGCTCCCACACCACAACGCGCCTAAGGTCCTCT
CACCGCAAGTCCGTCAACTCTCGAACTCCATCCCTCTTGCAGCTGGTGAT
CCCACCATACCGGACAGCACGCCTCGGGGGCCGATAACCCGCGGCCTGCC
GCTCCCACACGACGGCCTTTTCCCGGACTTTGCAAGGCAGCTGCGGTTCG
CCAGGGCGGGACCTTCTACAGATGTTGCTCGGAAGCAGCAGCAGCAGCAG
CAGCAAGGCAAGCTCCATGGTGGGGGCAAGGGCAAGGAGGGGGTCCAGCC
GAAGTTTACGGGGGAGTGGCGCGATTGAGCTGGCCGCCCGTCTGTGTTCA
GGCAGGTATCGCGGCGGTAGCTATGTGACCTGACCGGGTTGTTGCTGGTT
AGCGTGTTCACTGCGTGTGGGGTGCCTTACCGAAGCCACGGCTGTGCTGT
GCTGTCAGGGAATAGGTCACAGGCCGATACAAGAAGGCGGCCCGTCTTGC
ATACACGGGTAGAGAGAGAGGGAGCGGGATCAGCGAGAGGTTGGTTGAGG
GATTGGATATTCCCACCTACTGCTGCTGTAGCGTCCTAGGAGGGTGTCGT
GCATCAATTTGGAAGTCTAGCAGGTGTACATCAACGATGACGGTGGGTGT
GTGGTGGAAGATTAATGAAATTAGATAGCTACCCCGAAGGGCGGAGAGGG
ACGCTTAATGCGTTTATGATAAGAGGGGCTCAGGGTGAAACCGGTGATAA
ACCGGTGATTGCGGTTTCGGAAATAATAATTTTCCGATGACTGATGCATG
CACGGTTTGCTAAAGTCGGGGGTACACTGCCAATTGGGTGTGCTGGGTCC
GGTTCGCTTTTCACAAAATTCCTGTTATTTCTTCTGTTTGTGGTTAATCT
ACTATTTTTCTATTTTCCCTGCGAGAGATTGTGTGTGTACTCTACATTGG
AGGTAATACATCGAACGAGCTTTACGAGCTGGTGTATTTTTGTATTTTTT
GGGAGACTGTCGTGTGTGTGCAACGCCGGGGTGTCCGGTTTCGTGTCTGC
GCGCGCCCCAAAGGTTAAAGAACAACATCCTAGACCTCGATGCTTTAGAA
TCACGAAAATGGCGACGATCGAATGACTGATTTATGACTTTTGTGTTTGT
CACATGCCGACAGAGCGATGAGCTTGTCGTGGAATTTGGACAATTGGATC
ACAAGTACAAGATGTCTGTGTAACGTACAGAAATATGTTCTTATTAAGGC
ACAGACAAGTGGTTTTGCTTTGTATTCGCCGACGTGTGCTTTCCGTTCCG
GTGTCATTTTGTCGATAAGGTGCCCAGGCCTTGTAACTGGTGTCCAAAAT
GTATCACTTGTGTCTACTACGGACGGTATAATAATATCGAAGGCAATAAA
CAACGCGGTTTGTGTCTTTCCATCAGCAAGTCAAACGGAGAGAAGGGTAG
TATGTACGGTAGTACGACTTCGTGAATGTTTTTGCCTTTGGTGCAAATGG
AGGATGGAGGATGCTATTCAGCGGAAATCCAAACAACCCGACATGCCGTG
CACGATAATAACCTTGAGTTGTGCAAACCAAGCGCGTGCTCCGAAACCAC
CAGCAGAGAGAGTGCTGGTAAAAGGTCAGAAGGACCAGGCTGGGTGGAGA
ACATGAATTTAGTGACTGGCACGCTCGTGATGATTTCTTTGTCATTTTCC
ACTGCTCGCTTTGTTGGCCGGGAAGAAGTTGTTTTGGTCCATCATATATT
GTAGATATCTGGTGGTTGAACAGCAGTGAGTGAAATAACGCCCCGAAGAG
GTGTGCCCTGGGATGTACGACTGACAGCGAGCATGTTTCTTGAACTTGAC
GAAAATAAAATTCAGAGACGAGGGCAACGCATGTATAGTCTACACCTGCG
AGTTTGGACGGGTGGGGGGGGCAACAGCAGCAGCAGCAGCAGGGGAAATG
CAGCGCACGAAAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1167:3024..6389-

>mRNA_L-elsbetiae_contig1167.1442.1 ID=mRNA_L-elsbetiae_contig1167.1442.1|Name=mRNA_L-elsbetiae_contig1167.1442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig1167:3024..6389- (Laminarionema elsbetiae ELsaHSoW15)
CTGAACGCCGTGCCGCCGCCGGCGCCGCCGTCGGGCAACGCTGCTCCCGC
TGCTCCTCCGGCCGCGCTTCAGGGTCGGCTCTCGAGCGCCGGCGACGCGC
GGCGCATCTCGGCTTCTGCCGTGGCTGGGGTTGGCGGGGCGCCGGCCCCG
GTTGCGGCGGCCGCTGGAGGCAAGGCCAGGAAGGAAGAGCTGGAGAAGCG
GGAGCGGCAGCGGCAGCGGGAGCAGGAGACAGCTAGGGTCGCCAGGAGGG
AGGAGCTGCGGCGTAGCATGATGAGCGCGGAGCATCTTCACCTTCAGTTC
CGGAGCTTGCACGGGCCCGGTGCGGAGGACCGCGGGAATGACGAGCGGTC
GAGGCTGTACTTGAACTCTGAACGCCGTGCCGCCGCCGGCGCCGCCGTCG
GGCAACGCTGCTCCCGCTGCTCCTCCGGCCGCGCTTCAGGGTCGGCTCTC
GAGCGCCGGCGACGCGCGGCGCATCTCGGCTTCTGCCGTGGCTGGGGTTG
GCGGGGCGCCGGCCCCGGTTGCGGCGGCCGCTGGAGGCAAGGCCAGGAAG
GAAGAGCTGGAGAAGCGGGAGCGGCAGCGGCAGCGGGAGCAGGAGACAGC
TAGGGTCGCCAGGAGGGAGGAGCTGCGGCGTAGCATGATGAGCGCGGAGC
ATCTTCACCTTCAGTTCCGGAGCTTGCACGGGCCCGGTGCGGAGGACCGC
GGGAATGACGAGCGGTCGAGGCTGTACTTGAACTCTGGTGATCCCACCAT
ACCGGACAGCACGCCTCGGGGGCCGATAACCCGCGGCCTGCCGCTCCCAC
ACGACGGCCTTTTCCCGGACTTTGCAAGGCAGCTGCGGTTCGCCAGGGCG
GGACCTTCTACAGATGTTGCTCGGAAGCAGCAGCAGCAGCAGCAGCAAGG
CAAGCTCCATGGTGGGGGCAAGGGCAAGGAGGGGGTCCAGCCGAAGTTTA
CGGGGGAGTGGCGCGATTGACTGGTGATCCCACCATACCGGACAGCACGC
CTCGGGGGCCGATAACCCGCGGCCTGCCGCTCCCACACGACGGCCTTTTC
CCGGACTTTGCAAGGCAGCTGCGGTTCGCCAGGGCGGGACCTTCTACAGA
TGTTGCTCGGAAGCAGCAGCAGCAGCAGCAGCAAGGCAAGCTCCATGGTG
GGGGCAAGGGCAAGGAGGGGGTCCAGCCGAAGTTTACGGGGGAGTGGCGC
GATTGA
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