mRNA_L-elsbetiae_contig11669.1441.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11669.1441.1
Unique NamemRNA_L-elsbetiae_contig11669.1441.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: D7G536_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G536_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.720e-60
Identity = 93/120 (77.50%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    1 MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTVAKGLLAGK 360
            MP++ TLNYFGLPGR EATRVAL YAGKDFED++M F  YGA KWAGKG+PVLEM G EYTQSTA+LRYAGKLGGLYP+  LAALKVDEIVMI EDIM  +F C+GEK DTVAKG+L GK
Sbjct:    1 MPSTATLNYFGLPGRGEATRVALVYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMNGFEYTQSTALLRYAGKLGGLYPEDALAALKVDEIVMIGEDIMANMFKCMGEKGDTVAKGVLDGK 120          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.190e-60
Identity = 93/120 (77.50%), Postives = 106/120 (88.33%), Query Frame = 1
Query:    1 MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTVAKGLLAGK 360
            MP++ TLNYFGLPGR EATRVALAYAGKDFED++M F  YGA KWAGKG+PVLEM+ AEYTQSTA+LRYAGKLGGLYPD  LAALKVDEIVMIAED+M  +F C+G++DDTVAK +L GK
Sbjct:    1 MPSTATLNYFGLPGRGEATRVALAYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCMGQEDDTVAKEVLEGK 120          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.990e-57
Identity = 89/120 (74.17%), Postives = 104/120 (86.67%), Query Frame = 1
Query:    1 MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTVAKGLLAGK 360
            M ++ TLNYF LPGRAEATRVALAYAGK+F+D ++ F  YGA KWAGKG+PVL+M+GAEYTQSTA+LRYAGKLGGLYPD  LAALKVDEIVMI EDI+  +F C+G +DDTVAKG+L GK
Sbjct:    1 MSSTPTLNYFELPGRAEATRVALAYAGKEFDDKRLTFPEYGACKWAGKGLPVLQMDGAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIGEDILANMFKCMGAEDDTVAKGVLEGK 120          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 3.350e-56
Identity = 91/120 (75.83%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    1 MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTVAKGLLAGK 360
            MP++ TL+YF  PGRAEATRVALAYAGKDFED+ M F  YGASKWAG G+PVLEM+ AEYTQSTA+LRYAGKLGGLYPD  LAALKVDEIVMIAED+M  +F C+ +KDDT+A GLL GK
Sbjct:    1 MPSTATLHYFDDPGRAEATRVALAYAGKDFEDNIMGFPEYGASKWAGIGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCVDQKDDTMANGLLEGK 120          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: A0A6H5JNS9_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS9_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.140e-46
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 1
Query:   37 PGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTVAKGLLAGK 360
            PGR EAT VALAY GKDF D+ M F+ +GA KWAGKG+PVLEM+ AEY QSTA+LRYAGK+GGLYPD  LAAL+VDEIVMIAED++  +F C+G+ DDTVAKG+L GK
Sbjct:   55 PGRGEATGVALAYGGKDFVDNTMGFSEHGACKWAGKGLPVLEMDDAEYFQSTALLRYAGKMGGLYPDDALAALEVDEIVMIAEDVLTNMFKCMGQTDDTVAKGVLEGK 162          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: B1N8E9_9PHAE (Glutathione S-transferase 4 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.300e-40
Identity = 75/124 (60.48%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    1 MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTV----AKGLLAGK 360
            MPA    NYFG+P R EATRVALA AG D+ED +M F  +GA ++  K +PV +M+G +YTQSTA+LRYAGKLGG YP+CPLA+LKVDEIVMIAED+   LFS +GEKD+       + L+AGK
Sbjct:    1 MPA--VFNYFGIPARGEATRVALAVAGVDYEDKRMSFEEFGACEF--KTLPVYQMDGTDYTQSTALLRYAGKLGGQYPECPLASLKVDEIVMIAEDVFINLFSTMGEKDEAKKLEKCQTLMAGK 120          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: A0A6H5JTW5_9PHAE (GST N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.520e-23
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGVPVLEM 165
            MP++ TLNYFG+PGR EATRVALAYAG+DFED++M+F  YGASKWAGKG+PVLE+
Sbjct:    1 MPSTATLNYFGIPGRGEATRVALAYAGRDFEDNRMEFPEYGASKWAGKGLPVLEV 55          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: A0A6H5JE39_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE39_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.250e-22
Identity = 55/105 (52.38%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   58 RVALAYAGKDFEDHKMDFAGYGASKWAGKGVP----VLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDDTVAKGLLAGK 360
            R      G    D  ++  G   +K   K +P       M  AEY QST +LRYAGKLGGLYPD  LAALKVDEIVMIAED++  +  C G+KDDTVAKG+L GK
Sbjct:  265 RTTAKQQGTTMVDELLECLGCSTAKGLSKPIPNKTSTRAMNDAEYFQSTTLLRYAGKLGGLYPDDALAALKVDEIVMIAEDVLTNMSKCTGQKDDTVAKGVLVGK 369          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: A0A0L0DBM7_THETB (Ralgps2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBM7_THETB)

HSP 1 Score: 92.8 bits (229), Expect = 1.560e-19
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    7 ASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGK--GVPVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGKLFSCLGEKDD 330
            + + L YF  PGRA A R  L   G +FED  + FA + A K +     +PVLE++G +Y QS A+LRYAGKL G YP+ P+AAL VDE++  AED++G L   + EKD+
Sbjct:    4 SKLKLTYFPFPGRAGAIRDVLNDNGVEFEDFHVAFADFPALKPSLPYGAMPVLEIDGTDYAQSNAILRYAGKLTGAYPEDPVAALMVDELLDAAEDVIGLLTPSMKEKDE 113          
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Match: A0A3R7JBZ1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JBZ1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-18
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   10 SMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWA---GKGVPVLEMEGAEYTQSTAMLRYAGKLGGLYP-DCPLAALKVDEIVMIAEDIMGKLFSCLGEKD 327
            S+ L YF   GRAEA R+A    G  FED ++ +  +GA K +   G+ +PVLE++G   TQS A+LRYAG+LGGLYP   P AALKVDE++    ++  ++     EKD
Sbjct:    6 SIKLTYFSFGGRAEAARLAFYIGGVPFEDERISYEAFGAKKESLPLGQ-LPVLEVDGEVLTQSNAILRYAGRLGGLYPTSTPFAALKVDEVLHALSEMAEQMTPAFREKD 114          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11669.1441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G536_ECTSI1.720e-6077.50Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G537_ECTSI2.190e-6077.50Glutathione S-transferase n=4 Tax=Ectocarpus silic... [more]
D7G5G0_ECTSI1.990e-5774.17Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G5G1_ECTSI3.350e-5675.83Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JNS9_9PHAE3.140e-4671.30GST C-terminal domain-containing protein n=1 Tax=E... [more]
B1N8E9_9PHAE3.300e-4060.48Glutathione S-transferase 4 n=1 Tax=Laminaria digi... [more]
A0A6H5JTW5_9PHAE2.520e-2376.36GST N-terminal domain-containing protein n=1 Tax=E... [more]
A0A6H5JE39_9PHAE2.250e-2252.38DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A0L0DBM7_THETB1.560e-1947.27Ralgps2 protein n=1 Tax=Thecamonas trahens ATCC 50... [more]
A0A3R7JBZ1_9STRA1.800e-1845.45Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11669contigL-elsbetiae_contig11669:1883..2903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog529818.AMSG_06014T0
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG1695@1,KOG1695@2759,KOG3417@1,KOG3417@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons3
Model size360
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11669.1441.1prot_L-elsbetiae_contig11669.1441.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11669 1883..2903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.9782898-CDS-L-elsbetiae_contig11669:1882..19841622815368.9782898-CDS-L-elsbetiae_contig11669:1882..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11669 1883..1984 -
1691682865.1170158-CDS-L-elsbetiae_contig11669:1882..19841691682865.1170158-CDS-L-elsbetiae_contig11669:1882..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11669 1883..1984 -
1622815368.9935405-CDS-L-elsbetiae_contig11669:2339..24351622815368.9935405-CDS-L-elsbetiae_contig11669:2339..2435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11669 2340..2435 -
1691682865.1307278-CDS-L-elsbetiae_contig11669:2339..24351691682865.1307278-CDS-L-elsbetiae_contig11669:2339..2435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11669 2340..2435 -
1622815369.0067034-CDS-L-elsbetiae_contig11669:2741..29031622815369.0067034-CDS-L-elsbetiae_contig11669:2741..2903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11669 2742..2903 -
1691682865.1392515-CDS-L-elsbetiae_contig11669:2741..29031691682865.1392515-CDS-L-elsbetiae_contig11669:2741..2903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11669 2742..2903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11669.1441.1

>prot_L-elsbetiae_contig11669.1441.1 ID=prot_L-elsbetiae_contig11669.1441.1|Name=mRNA_L-elsbetiae_contig11669.1441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MPASMTLNYFGLPGRAEATRVALAYAGKDFEDHKMDFAGYGASKWAGKGV
PVLEMEGAEYTQSTAMLRYAGKLGGLYPDCPLAALKVDEIVMIAEDIMGK
LFSCLGEKDDTVAKGLLAGK
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mRNA from alignment at L-elsbetiae_contig11669:1883..2903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11669.1441.1 ID=mRNA_L-elsbetiae_contig11669.1441.1|Name=mRNA_L-elsbetiae_contig11669.1441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1021bp|location=Sequence derived from alignment at L-elsbetiae_contig11669:1883..2903- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCTTCCATGACCCTCAACTACTTCGGACTCCCCGGCCGCGCCGA GGCTACCCGGGTGGCCCTCGCCTACGCCGGAAAGGACTTCGAGGACCACA AGATGGACTTCGCGGGGTACGGCGCCTCCAAGTGGGCTGGGAAGGGCGTC CCCGTTCTCGAGGTGAGCACACGAGAGGGAGAGAGAGAAAGAGAAAGAGA GAGAGCTAATGCATATGTAGAATTTGGGGAGGTAGACTGGAGCTAGCGAG AAAGAGAAAGCGCGCCAGTTGTTGCGAGACCATGTACATAGATATATTTG CTGCCAAATGCATAGTCTATCTAAATACTGTAGATAGATGTACGTCGAAA TATGTAAGTGCATAGAAGTATCTAGTCTAGAACTACCGGGTCCGGACAGC ATGTGTCATCCGTGTCTGTTCGTGCCCAACGGCCCTTCCCCCTTTGTTTG GTTGGGCTCTTGATTCAGATGGAGGGCGCGGAGTACACCCAGTCGACGGC CATGCTTAGGTACGCCGGCAAGTTGGGGGGCCTCTACCCCGACTGCCCGC TCGCCGCCCTCAAGGTATCTATTTGGTGTGTGGTTTGAGATGCATAACTG TTGTGTCAGCTGCGGGGTCTGTCTGCTTTCCCCGTCCTCTGGTCCGTTAC AGCTGGAAAAGTTGGGTGCATGTGTGTACGTACCGCCTCGGTGCACTGCT ATCTGTGTACCGGCGAATGTGTCGATTGTTCGTCGATTTTGCCCGTTGTC TGCTCTACCGACTGTTTTTGCTACAGTATCGTTTCGGATCACAGCCTTCT ATATACCTCGCTTTAATTCTTAATTCCTGTGTTTCCTCTCTCAATCGCCT TCGCTTCCTTCTCCAGCCAGCATCTGACTATTTTTTCCGAACTATACTCG ACGAAACCTGATGGACCAGGTTGACGAGATCGTGATGATCGCGGAGGACA TCATGGGAAAGCTCTTCTCTTGCTTGGGGGAGAAGGATGACACCGTCGCC AAGGGCTTGCTCGCGGGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11669:1883..2903-

>mRNA_L-elsbetiae_contig11669.1441.1 ID=mRNA_L-elsbetiae_contig11669.1441.1|Name=mRNA_L-elsbetiae_contig11669.1441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig11669:1883..2903- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCTTCCATGACCCTCAACTACTTCGGACTCCCCGGCCGCGCCGA
GGCTACCCGGGTGGCCCTCGCCTACGCCGGAAAGGACTTCGAGGACCACA
AGATGGACTTCGCGGGGTACGGCGCCTCCAAGTGGGCTGGGAAGGGCGTC
CCCGTTCTCGAGATGCCTGCTTCCATGACCCTCAACTACTTCGGACTCCC
CGGCCGCGCCGAGGCTACCCGGGTGGCCCTCGCCTACGCCGGAAAGGACT
TCGAGGACCACAAGATGGACTTCGCGGGGTACGGCGCCTCCAAGTGGGCT
GGGAAGGGCGTCCCCGTTCTCGAGATGGAGGGCGCGGAGTACACCCAGTC
GACGGCCATGCTTAGGTACGCCGGCAAGTTGGGGGGCCTCTACCCCGACT
GCCCGCTCGCCGCCCTCAAGATGGAGGGCGCGGAGTACACCCAGTCGACG
GCCATGCTTAGGTACGCCGGCAAGTTGGGGGGCCTCTACCCCGACTGCCC
GCTCGCCGCCCTCAAGGTTGACGAGATCGTGATGATCGCGGAGGACATCA
TGGGAAAGCTCTTCTCTTGCTTGGGGGAGAAGGATGACACCGTCGCCAAG
GGCTTGCTCGCGGGAAAGGTTGACGAGATCGTGATGATCGCGGAGGACAT
CATGGGAAAGCTCTTCTCTTGCTTGGGGGAGAAGGATGACACCGTCGCCA
AGGGCTTGCTCGCGGGAAAG
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