mRNA_L-elsbetiae_contig11661.1440.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11661.1440.1
Unique NamemRNA_L-elsbetiae_contig11661.1440.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11661.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11661contigL-elsbetiae_contig11661:1318..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size334
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.938136-UTR-L-elsbetiae_contig11661:1317..13271622815368.938136-UTR-L-elsbetiae_contig11661:1317..1327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11661 1318..1327 +
1691682865.0995336-UTR-L-elsbetiae_contig11661:1317..13271691682865.0995336-UTR-L-elsbetiae_contig11661:1317..1327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11661 1318..1327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.9480083-CDS-L-elsbetiae_contig11661:1327..16511622815368.9480083-CDS-L-elsbetiae_contig11661:1327..1651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11661 1328..1651 +
1691682865.10804-CDS-L-elsbetiae_contig11661:1327..16511691682865.10804-CDS-L-elsbetiae_contig11661:1327..1651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11661 1328..1651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11661.1440.1prot_L-elsbetiae_contig11661.1440.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11661 1328..1651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11661.1440.1

>prot_L-elsbetiae_contig11661.1440.1 ID=prot_L-elsbetiae_contig11661.1440.1|Name=mRNA_L-elsbetiae_contig11661.1440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MKRWLFATVFCSVGGSPCMTQFFIWTYTAVKGRCCVCTPVVLNRVFFSAD
RVQRARTHATQAPTPSSYPHCHHISMTTVFFRGIDHRLFSFRARFVLCPT
TSGICYR*
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mRNA from alignment at L-elsbetiae_contig11661:1318..1651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11661.1440.1 ID=mRNA_L-elsbetiae_contig11661.1440.1|Name=mRNA_L-elsbetiae_contig11661.1440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=334bp|location=Sequence derived from alignment at L-elsbetiae_contig11661:1318..1651+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAGGCCCGATGAAACGATGGTTGTTCGCAACTGTTTTTTGTAGTGTCG
GCGGCAGCCCATGCATGACTCAATTTTTCATCTGGACTTACACAGCAGTA
AAGGGGCGCTGTTGTGTGTGCACGCCGGTCGTGCTGAACCGTGTTTTTTT
CAGCGCAGACCGCGTACAGCGGGCACGCACGCACGCAACGCAAGCACCCA
CCCCCTCTTCCTACCCTCATTGCCACCATATCTCCATGACAACCGTGTTT
TTTCGTGGCATTGATCACCGTCTCTTTTCATTTCGTGCCCGTTTTGTTTT
GTGCCCCACCACCTCCGGCATTTGTTATCGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11661:1318..1651+

>mRNA_L-elsbetiae_contig11661.1440.1 ID=mRNA_L-elsbetiae_contig11661.1440.1|Name=mRNA_L-elsbetiae_contig11661.1440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig11661:1318..1651+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACGATGGTTGTTCGCAACTGTTTTTTGTAGTGTCGGCGGCAGCCC
ATGCATGACTCAATTTTTCATCTGGACTTACACAGCAGTAAAGGGGCGCT
GTTGTGTGTGCACGCCGGTCGTGCTGAACCGTGTTTTTTTCAGCGCAGAC
CGCGTACAGCGGGCACGCACGCACGCAACGCAAGCACCCACCCCCTCTTC
CTACCCTCATTGCCACCATATCTCCATGACAACCGTGTTTTTTCGTGGCA
TTGATCACCGTCTCTTTTCATTTCGTGCCCGTTTTGTTTTGTGCCCCACC
ACCTCCGGCATTTGTTATCGCTAAATGAAACGATGGTTGTTCGCAACTGT
TTTTTGTAGTGTCGGCGGCAGCCCATGCATGACTCAATTTTTCATCTGGA
CTTACACAGCAGTAAAGGGGCGCTGTTGTGTGTGCACGCCGGTCGTGCTG
AACCGTGTTTTTTTCAGCGCAGACCGCGTACAGCGGGCACGCACGCACGC
AACGCAAGCACCCACCCCCTCTTCCTACCCTCATTGCCACCATATCTCCA
TGACAACCGTGTTTTTTCGTGGCATTGATCACCGTCTCTTTTCATTTCGT
GCCCGTTTTGTTTTGTGCCCCACCACCTCCGGCATTTGTTATCGCTAA
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