mRNA_L-elsbetiae_contig11658.1437.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11658.1437.1
Unique NamemRNA_L-elsbetiae_contig11658.1437.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11658.1437.1 vs. uniprot
Match: A0A6H5K4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.690e-39
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 2 
Query:   20 MDIAIQAVRSKTTRSLDGTSSGNDAFLGDVAKARAVFGGLDTEGRSLTFEEVRALEHHGNWSSDWSLVRVSNGNN-NAASSGVAAGRVRGCFFHGPVQLGDLSGEIKIPAVDQYSQ 364
            MDIAIQAVR+KT RSL+G    ND FL DVA AR V+ GL +EGR LT EEVR L+ HGNW+++WSLVRVS G+  +   S +AAGRVRGC FHGPV LGD SGEI +P  +QYSQ
Sbjct:    1 MDIAIQAVRAKTGRSLEGPPQSNDEFLEDVAAARGVYAGLQSEGRGLTSEEVRKLQVHGNWATNWSLVRVSEGSGPSETKSSIAAGRVRGCVFHGPVLLGDFSGEIILPVAEQYSQ 116
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BLAST of mRNA_L-elsbetiae_contig11658.1437.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.730e-38
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 2 
Query:   20 MDIAIQAVRSKTTRSLDGTSSGNDAFLGDVAKARAVFGGLDTEGRSLTFEEVRALEHHGNWSSDWSLVRVSNGNNNA-ASSGVAAGRVRGCFFHGPVQLGDLSGEIKIPAVDQYSQ 364
            MD+AIQ VR+KT RSL+     ND FL D A AR V+ GL +EGR LT EEVR LE HGNW++DWSLVRVS G+ ++  +S + AGRVRGC FHGPV LGD SGEI +P  +QYSQ
Sbjct:    1 MDVAIQGVRAKTGRSLEAPPQSNDEFLQDAAAARGVYAGLQSEGRGLTSEEVRELEVHGNWATDWSLVRVSKGSGSSKTTSSIGAGRVRGCVFHGPVLLGDFSGEIILPVAEQYSQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11658.1437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4J9_9PHAE1.690e-3964.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ4_ECTSI2.730e-3862.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11658contigL-elsbetiae_contig11658:3650..5031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue4.2e-32
Seed eggNOG ortholog2880.D7FSJ4
Hectar predicted targeting categoryother localisation
EggNOG OGs29314@1,2R9XZ@2759
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-11_003920.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size365
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11658.1437.1prot_L-elsbetiae_contig11658.1437.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11658 3669..5031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.5846014-UTR-L-elsbetiae_contig11658:3649..36681622815368.5846014-UTR-L-elsbetiae_contig11658:3649..3668Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11658 3650..3668 +
1691682864.9049835-UTR-L-elsbetiae_contig11658:3649..36681691682864.9049835-UTR-L-elsbetiae_contig11658:3649..3668Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11658 3650..3668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.5953846-CDS-L-elsbetiae_contig11658:3668..38211622815368.5953846-CDS-L-elsbetiae_contig11658:3668..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11658 3669..3821 +
1691682864.9158094-CDS-L-elsbetiae_contig11658:3668..38211691682864.9158094-CDS-L-elsbetiae_contig11658:3668..3821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11658 3669..3821 +
1622815368.604761-CDS-L-elsbetiae_contig11658:4502..46611622815368.604761-CDS-L-elsbetiae_contig11658:4502..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11658 4503..4661 +
1691682864.926878-CDS-L-elsbetiae_contig11658:4502..46611691682864.926878-CDS-L-elsbetiae_contig11658:4502..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11658 4503..4661 +
1622815368.6138628-CDS-L-elsbetiae_contig11658:4998..50311622815368.6138628-CDS-L-elsbetiae_contig11658:4998..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11658 4999..5031 +
1691682864.9345987-CDS-L-elsbetiae_contig11658:4998..50311691682864.9345987-CDS-L-elsbetiae_contig11658:4998..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11658 4999..5031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11658.1437.1

>prot_L-elsbetiae_contig11658.1437.1 ID=prot_L-elsbetiae_contig11658.1437.1|Name=mRNA_L-elsbetiae_contig11658.1437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MDIAIQAVRSKTTRSLDGTSSGNDAFLGDVAKARAVFGGLDTEGRSLTFE
EVRALEHHGNWSSDWSLVRVSNGNNNAASSGVAAGRVRGCFFHGPVQLGD
LSGEIKIPAVDQYSQ
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mRNA from alignment at L-elsbetiae_contig11658:3650..5031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11658.1437.1 ID=mRNA_L-elsbetiae_contig11658.1437.1|Name=mRNA_L-elsbetiae_contig11658.1437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1382bp|location=Sequence derived from alignment at L-elsbetiae_contig11658:3650..5031+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTGACACGGTCTGTTATGGATATCGCCATTCAAGCAGTACGAAGCA
AGACTACGAGATCACTGGATGGAACCTCAAGCGGCAATGACGCTTTTCTG
GGGGATGTTGCGAAAGCACGAGCTGTCTTTGGAGGCCTCGACACCGAAGG
CAGAAGTCTGACATTCGAGGAGGTGAGATCCCATCACAGAGTTGTATGTA
CGATATCTATGTAAATTTATCTGCAGCAGCCTTTTCGCGACCTCGGTAAA
CGAGATGTCCCCAGTAAACACGATCTCGCGTGTTGGCAAAAACATCTCAA
AGTCTGTCAAGAGGAACACACACGTGTGCTGCTCATGCCGCGTGCTCACC
CAGCTCTCTCCGCATGTATATACTTTTCTTGCTCGACGAATTCATGAGGG
CACGCCTCGCGGTGACCAAAGATGGCAGCTGTTTGTCGGGTGGCCAATGC
GTTCTTCAGCCCTTTGTGGCCAATAAGCGTCAATTGCGTGTCTGCGGTAT
TCCCACATTTCGAACAACGGAGACAATGGCGGTGTCTGTATGCTGTACGG
AGTATCTAAATCTCAAAATATATGTAGGCAGGCAGGATATGCATTTGCGG
ACCGCTGGATGGCGGTTCGTGTTTGATTTCGTGGTACATACATACTCCGA
GTTCTTGAGGTGCCGGGTGCCAGCGTGTTGTATGCATGTAGGCTATATAC
TCTCTCCTCCTTTTCTCGGAAGCAGTCTTCTCCTGTAGACAAACGACCTC
ACCGCATCTGACTCGGAAAATATGAGAATTTCAGAAATTTCATGGATATA
TGTGTTGTACAATAGACTAATCTTAATATTTACACACACGTGCACTTCCA
AAGGTGCGGGCGCTTGAGCACCACGGCAACTGGTCCTCCGACTGGTCGCT
GGTGCGCGTCTCGAACGGGAACAACAACGCCGCATCGAGCGGCGTCGCCG
CCGGGCGCGTGCGCGGCTGCTTCTTCCACGGGCCGGTGCAGCTAGGCGAT
CTCAGCGGAGAGGTGCGTGTCGAACGAACAACAAGCACGGCGCAGACAGG
GACCCAGCGACTGCACCCCCGTCGTGTTTTATGTATGTATGTATGACAAT
GAGGAAGCAGGCCCCAAACCCCAAGCCGACCCAACCCCCAAGGCGCTCTT
TTCCTTCCTCGTGCCTTCTTTTCCCCCACAATAGTGGTAGGATACACAAT
TAGAAGTGTACGTACCTCCGTAAATACGTACCAAAAGGGACCACCGCCGT
ATATACTACTGCTGCTGTTGGGGCATTGCCCGGTGTCGTCTTAGTCTGCT
GCTTAAAAAAAATGTACCCTACGTTCTCCGCCCGCACTGGCTGCCGCAGA
TAAAAATTCCGGCGGTTGATCAATACTCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11658:3650..5031+

>mRNA_L-elsbetiae_contig11658.1437.1 ID=mRNA_L-elsbetiae_contig11658.1437.1|Name=mRNA_L-elsbetiae_contig11658.1437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig11658:3650..5031+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATATCGCCATTCAAGCAGTACGAAGCAAGACTACGAGATCACTGGA
TGGAACCTCAAGCGGCAATGACGCTTTTCTGGGGGATGTTGCGAAAGCAC
GAGCTGTCTTTGGAGGCCTCGACACCGAAGGCAGAAGTCTGACATTCGAG
GAGATGGATATCGCCATTCAAGCAGTACGAAGCAAGACTACGAGATCACT
GGATGGAACCTCAAGCGGCAATGACGCTTTTCTGGGGGATGTTGCGAAAG
CACGAGCTGTCTTTGGAGGCCTCGACACCGAAGGCAGAAGTCTGACATTC
GAGGAGGTGCGGGCGCTTGAGCACCACGGCAACTGGTCCTCCGACTGGTC
GCTGGTGCGCGTCTCGAACGGGAACAACAACGCCGCATCGAGCGGCGTCG
CCGCCGGGCGCGTGCGCGGCTGCTTCTTCCACGGGCCGGTGCAGCTAGGC
GATCTCAGCGGAGAGGTGCGGGCGCTTGAGCACCACGGCAACTGGTCCTC
CGACTGGTCGCTGGTGCGCGTCTCGAACGGGAACAACAACGCCGCATCGA
GCGGCGTCGCCGCCGGGCGCGTGCGCGGCTGCTTCTTCCACGGGCCGGTG
CAGCTAGGCGATCTCAGCGGAGAGATAAAAATTCCGGCGGTTGATCAATA
CTCGCAGATAAAAATTCCGGCGGTTGATCAATACTCGCAG
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