mRNA_L-elsbetiae_contig11657.1436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11657.1436.1
Unique NamemRNA_L-elsbetiae_contig11657.1436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 4.320e-41
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLLR 270
            DEAAQAVEP+S+IPLK+NPR   AV+MVGDPAQLPATIFS++A RANY QSLF RLQRGGHPK MLDTQYRMHPDIASFASTRFY+GLLR
Sbjct:  780 DEAAQAVEPSSMIPLKYNPR---AVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLLR 866
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.580e-38
Identity = 72/90 (80.00%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLLR 270
            D    AVEP+S+IPLK+NPR   AV+MVGDPAQLPATIFS++A RANY QSLF RLQRGGHPK MLDTQYRMHPDIASFASTRFY+GLLR
Sbjct:  971 DAVVMAVEPSSMIPLKYNPR---AVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDIASFASTRFYSGLLR 1057
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A482SHI2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHI2_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 3.950e-30
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQAVEP+S+IP K+NP+    VVMVGDP QLPAT+FSR    ANY QSLFQRLQR G P  ML+TQYRMHP IA F S R+YN  L
Sbjct:   98 DEAAQAVEPSSLIPFKYNPQL---VVMVGDPCQLPATVFSRLCKEANYSQSLFQRLQRSGVPVAMLETQYRMHPAIAEFPSMRYYNNFL 183
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A7S3MCA3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCA3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.230e-28
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQAVEP+S+IP K+NP+   AVV+VGDP QLPAT+FS  A +A Y QSLFQRLQ  G+P +ML+TQYRMHP IA + S R+Y   L
Sbjct:  813 DEAAQAVEPSSLIPFKYNPQ---AVVLVGDPCQLPATVFSATAKKAGYSQSLFQRLQIAGYPVLMLETQYRMHPAIAEYPSLRYYQSRL 898
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A7S3C4A0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C4A0_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 1.450e-25
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQAVE +++IPLK+   C R ++++GDP QLPAT+FS+ AT+ NY QSLF RLQ+GG    ML TQYRMHP I+ F + RFY G L
Sbjct:   24 DEAAQAVEASTLIPLKYG--C-RRLILIGDPEQLPATVFSQVATQHNYEQSLFHRLQQGGQRVTMLTTQYRMHPYISKFPAHRFYQGAL 109
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A7R9UGG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGG7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.680e-25
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPK-MMLDTQYRMHPDIASFASTRFY 255
            DEAAQAVE +++IPL++NP+   AVV+VGDPAQLPAT+ SREA     G SLF+RLQ GG P+   LDTQYRMHP IA   S+ FY
Sbjct:   42 DEAAQAVETSTLIPLRYNPQ---AVVLVGDPAQLPATVLSREAQAGGLGGSLFERLQEGGFPRCFFLDTQYRMHPKIARIVSSMFY 124
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A8J2WTU9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTU9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.860e-25
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQAVEP++ IPL++ P+    VV+VGDPAQL AT+ S    RA YGQSLF+RL RGGHP  +L TQYRM  D+    S RFY+GLL
Sbjct:  424 DEAAQAVEPSTYIPLRYGPK---RVVLVGDPAQLAATLLSPATERAGYGQSLFERLWRGGHPTSLLRTQYRMQRDLCDLVSRRFYSGLL 509
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: UPI001CC5B88D (probable helicase MAGATAMA 3 n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC5B88D)

HSP 1 Score: 105 bits (261), Expect = 2.300e-24
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQAVEPA+++PL     C + V +VGDP QLPAT+ SR A R  YG S+F+RLQR G+P  ML TQYRMHP+I SF S  FYN  L
Sbjct:  486 DEAAQAVEPATLVPLASG--C-KQVFLVGDPVQLPATVISRTAERFGYGMSMFKRLQRAGYPVQMLKTQYRMHPEIRSFPSREFYNDAL 571
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BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A7S2CDY4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CDY4_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 5.150e-24
Identity = 52/89 (58.43%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQA E +++IPL++  R    VV+VGDP QLPATI S EA +  Y  SLF+RLQRG +P  ML TQYRMHP I  F S  FY G L
Sbjct:   17 DEAAQAAELSTLIPLQYGAR---RVVLVGDPQQLPATIISMEAKQLGYDSSLFERLQRGYYPSHMLRTQYRMHPSIRRFPSAHFYRGAL 102
[Close]
BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Match: A0A1Y1IHE5_KLENI (Protein with P-loop containing nucleoside triphosphate hydrolase domain n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHE5_KLENI)

HSP 1 Score: 103 bits (258), Expect = 6.050e-24
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 DEAAQAVEPASVIPLKFN-PRCDRAVVMVGDPAQLPATIFSREATRANYGQSLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLL 267
            DEAAQA+EPA++IPL+   PR  R + M+GDP QLPAT+ SR A   NY +SLF+RLQRGG P  +L  QYRMHP+I  F S  FY GLL
Sbjct: 1940 DEAAQALEPATLIPLQLLVPRGGRCI-MIGDPKQLPATVLSRAAANFNYERSLFERLQRGGLPVTLLSAQYRMHPEIRQFPSAHFYGGLL 2028
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11657.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE51_ECTSI4.320e-4184.44SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JS06_9PHAE1.580e-3880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SHI2_9ARCH3.950e-3068.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3MCA3_9STRA7.230e-2864.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3C4A0_9EUKA1.450e-2559.55Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7R9UGG7_9STRA1.680e-2562.79Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A8J2WTU9_9STRA4.860e-2560.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI001CC5B88D2.300e-2460.67probable helicase MAGATAMA 3 n=2 Tax=Proteaceae Ta... [more]
A0A7S2CDY4_9EUKA5.150e-2458.43Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A1Y1IHE5_KLENI6.050e-2460.00Protein with P-loop containing nucleoside triphosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11657contigL-elsbetiae_contig11657:3992..4641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.1e-35
Seed eggNOG ortholog2880.D8LE51
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.4977999-CDS-L-elsbetiae_contig11657:3991..40591622815368.4977999-CDS-L-elsbetiae_contig11657:3991..4059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11657 3992..4059 +
1691682864.8840225-CDS-L-elsbetiae_contig11657:3991..40591691682864.8840225-CDS-L-elsbetiae_contig11657:3991..4059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11657 3992..4059 +
1622815368.5086267-CDS-L-elsbetiae_contig11657:4439..46411622815368.5086267-CDS-L-elsbetiae_contig11657:4439..4641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11657 4440..4641 +
1691682864.8957267-CDS-L-elsbetiae_contig11657:4439..46411691682864.8957267-CDS-L-elsbetiae_contig11657:4439..4641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11657 4440..4641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11657.1436.1prot_L-elsbetiae_contig11657.1436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11657 3992..4641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11657.1436.1

>prot_L-elsbetiae_contig11657.1436.1 ID=prot_L-elsbetiae_contig11657.1436.1|Name=mRNA_L-elsbetiae_contig11657.1436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
DEAAQAVEPASVIPLKFNPRCDRAVVMVGDPAQLPATIFSREATRANYGQ
SLFQRLQRGGHPKMMLDTQYRMHPDIASFASTRFYNGLLR
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mRNA from alignment at L-elsbetiae_contig11657:3992..4641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11657.1436.1 ID=mRNA_L-elsbetiae_contig11657.1436.1|Name=mRNA_L-elsbetiae_contig11657.1436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig11657:3992..4641+ (Laminarionema elsbetiae ELsaHSoW15)
GATGAGGCCGCGCAGGCGGTCGAGCCGGCTTCCGTCATCCCGCTCAAGTT
CAACCCCAGGTGCGATCGGTGGCTCGAGAGCATGCAGAGTAAGTACCACA
CTACATCCTGTGCAATAGATGACCTATAGCCTGGTGTATATCAAGAAAGT
CAGGCCGGGCCTGGTATCGGGCTTCCTTTTAGCGGGGCCGCCGCCACTGG
TGTATGTCCCCGCACGTGCTTGCCGGTTGTCTCGCCCCCCCTCACTGTGC
CTTGCCCTGCCATGTACCCACCGGTGCCTGTTGAGGCAGTACGGCGTATT
TTCGGCGGAAATCCAGAGTGTCTACAGCAGTGCATATGTAGCAGAGGATG
CCTCGGCCTTGGCAAGCGCAACCAATCTTCATGAATGCACTCACACATGC
TCCTAAATTCGCCAAAACATTTCTCCGGGATGTGTGCGCCGCCGCCAGGG
CTGTCGTGATGGTCGGGGACCCGGCGCAGCTTCCGGCCACCATCTTCTCC
CGGGAGGCCACACGCGCCAACTACGGGCAGAGCCTGTTCCAGCGGCTGCA
GCGGGGGGGGCACCCCAAGATGATGCTGGACACGCAGTACCGCATGCACC
CTGATATCGCGTCCTTCGCCTCGACCCGCTTTTACAACGGCCTCTTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11657:3992..4641+

>mRNA_L-elsbetiae_contig11657.1436.1 ID=mRNA_L-elsbetiae_contig11657.1436.1|Name=mRNA_L-elsbetiae_contig11657.1436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig11657:3992..4641+ (Laminarionema elsbetiae ELsaHSoW15)
GATGAGGCCGCGCAGGCGGTCGAGCCGGCTTCCGTCATCCCGCTCAAGTT
CAACCCCAGGTGCGATCGGATGAGGCCGCGCAGGCGGTCGAGCCGGCTTC
CGTCATCCCGCTCAAGTTCAACCCCAGGTGCGATCGGGCTGTCGTGATGG
TCGGGGACCCGGCGCAGCTTCCGGCCACCATCTTCTCCCGGGAGGCCACA
CGCGCCAACTACGGGCAGAGCCTGTTCCAGCGGCTGCAGCGGGGGGGGCA
CCCCAAGATGATGCTGGACACGCAGTACCGCATGCACCCTGATATCGCGT
CCTTCGCCTCGACCCGCTTTTACAACGGCCTCTTGAGGGGCTGTCGTGAT
GGTCGGGGACCCGGCGCAGCTTCCGGCCACCATCTTCTCCCGGGAGGCCA
CACGCGCCAACTACGGGCAGAGCCTGTTCCAGCGGCTGCAGCGGGGGGGG
CACCCCAAGATGATGCTGGACACGCAGTACCGCATGCACCCTGATATCGC
GTCCTTCGCCTCGACCCGCTTTTACAACGGCCTCTTGAGG
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