mRNA_L-elsbetiae_contig11655.1433.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11655.1433.1
Unique NamemRNA_L-elsbetiae_contig11655.1433.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11655.1433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11655contigL-elsbetiae_contig11655:2965..3479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11655.1433.1prot_L-elsbetiae_contig11655.1433.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11655 2965..3454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.276582-CDS-L-elsbetiae_contig11655:2964..30531622815368.276582-CDS-L-elsbetiae_contig11655:2964..3053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11655 2965..3053 -
1691682864.7597651-CDS-L-elsbetiae_contig11655:2964..30531691682864.7597651-CDS-L-elsbetiae_contig11655:2964..3053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11655 2965..3053 -
1622815368.2866983-CDS-L-elsbetiae_contig11655:3396..34541622815368.2866983-CDS-L-elsbetiae_contig11655:3396..3454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11655 3397..3454 -
1691682864.7712545-CDS-L-elsbetiae_contig11655:3396..34541691682864.7712545-CDS-L-elsbetiae_contig11655:3396..3454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11655 3397..3454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.3000076-UTR-L-elsbetiae_contig11655:3454..34791622815368.3000076-UTR-L-elsbetiae_contig11655:3454..3479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11655 3455..3479 -
1691682864.7808902-UTR-L-elsbetiae_contig11655:3454..34791691682864.7808902-UTR-L-elsbetiae_contig11655:3454..3479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11655 3455..3479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11655.1433.1

>prot_L-elsbetiae_contig11655.1433.1 ID=prot_L-elsbetiae_contig11655.1433.1|Name=mRNA_L-elsbetiae_contig11655.1433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
MQQRLSVFVQYKNTSRWLVGVLYRPLPLDCGGNDVAALIESTPSRSAA*
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mRNA from alignment at L-elsbetiae_contig11655:2965..3479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11655.1433.1 ID=mRNA_L-elsbetiae_contig11655.1433.1|Name=mRNA_L-elsbetiae_contig11655.1433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=515bp|location=Sequence derived from alignment at L-elsbetiae_contig11655:2965..3479- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGCTGTGGAGGGCTGAGGGGCGATGCAACAGCGTTTGTCGGTTTTCG
TGCAATACAAAAATACTTCGAGGTGGCTCGTAGGTAGTCAATCTTGTTCT
TTTTCTAGCCATGGTACCTAGGTATCGTAGTCTCGTGGCCATACCTACCT
CAGCCAACGTACGTGCTCTAGGAGTTGCAGTACTTCCTTTTGGAAATCGC
TGTTGAACTTGATGACGTAGGTATACATTTTCGTCGCTCTTTCGTTGTGT
TGCTCCGTCTGCCGAGTACGGTAGTTTCTGGTGTGATAGTTCAAGAGCTC
GGGTTCATGTGGGTATGATGCGTGTTGTCGATGCCGCCGACACAGGATAA
GATTACACCCGTCAAGGTGCCGGCAACGATTACCTAGACTTGCAAGATCA
AGCGCCTTCCCCTATTTGTTTTCCAGGCGTTCTCTATCGCCCTCTGCCCC
TGGACTGCGGTGGCAACGATGTGGCAGCGTTGATTGAGAGCACGCCCTCT
CGCTCTGCGGCATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11655:2965..3479-

>mRNA_L-elsbetiae_contig11655.1433.1 ID=mRNA_L-elsbetiae_contig11655.1433.1|Name=mRNA_L-elsbetiae_contig11655.1433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig11655:2965..3479- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACAGCGTTTGTCGGTTTTCGTGCAATACAAAAATACTTCGAGGTG
GCTCGTAGATGCAACAGCGTTTGTCGGTTTTCGTGCAATACAAAAATACT
TCGAGGTGGCTCGTAGGCGTTCTCTATCGCCCTCTGCCCCTGGACTGCGG
TGGCAACGATGTGGCAGCGTTGATTGAGAGCACGCCCTCTCGCTCTGCGG
CATAGGCGTTCTCTATCGCCCTCTGCCCCTGGACTGCGGTGGCAACGATG
TGGCAGCGTTGATTGAGAGCACGCCCTCTCGCTCTGCGGCATAG
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