mRNA_L-elsbetiae_contig11650.1431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11650.1431.1
Unique NamemRNA_L-elsbetiae_contig11650.1431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11650.1431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11650contigL-elsbetiae_contig11650:1481..2536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002270.1
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815368.165784-CDS-L-elsbetiae_contig11650:1480..15631622815368.165784-CDS-L-elsbetiae_contig11650:1480..1563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11650 1481..1563 +
1691682864.703369-CDS-L-elsbetiae_contig11650:1480..15631691682864.703369-CDS-L-elsbetiae_contig11650:1480..1563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11650 1481..1563 +
1622815368.187343-CDS-L-elsbetiae_contig11650:2238..25361622815368.187343-CDS-L-elsbetiae_contig11650:2238..2536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11650 2239..2536 +
1691682864.7174394-CDS-L-elsbetiae_contig11650:2238..25361691682864.7174394-CDS-L-elsbetiae_contig11650:2238..2536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11650 2239..2536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11650.1431.1prot_L-elsbetiae_contig11650.1431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11650 1481..2536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11650.1431.1

>prot_L-elsbetiae_contig11650.1431.1 ID=prot_L-elsbetiae_contig11650.1431.1|Name=mRNA_L-elsbetiae_contig11650.1431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
KDCDVPAPSLDPSVERVLMDWVRSRIDRNGRLKPSGSDDGGESAAYGDLE
QRIREEEHPWDSDLLHRGSSSGGGGGDGGRPPASPLTRTSTRRDLLRGHH
HQRERQRELLHHHQRDGGSGIDTRRPA
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mRNA from alignment at L-elsbetiae_contig11650:1481..2536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11650.1431.1 ID=mRNA_L-elsbetiae_contig11650.1431.1|Name=mRNA_L-elsbetiae_contig11650.1431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig11650:1481..2536+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGATTGCGATGTCCCCGCACCGTCGCTGGACCCAAGCGTCGAGAGGGT
CTTGATGGATTGGGTCCGGTCGAGAATCGACAGGTGACGGCACGACGAAC
GCGGCGTTCCGTTGCGCGGAAATATGCTCGTTTTCGCCGCCGGCTTCCTC
CCGCCACCGACCGTGTGCTCTATTGTAGCGGCTGTAGAGTTATGATCCTT
TGCTGCCGCGTGAGGGCTACGTCGAAGGAGTGGTCATCGTCCCTAGTCTG
CGTTTTGTGCGCTGGCTGCGGGTGCTCTGCTGAATGATATTACTACTCCA
CGCGCGTTTTTGTGCATACACAGCCGACGCGCAAAAAACACCTTTCTTAC
GGCGAGAGCGCAAACCACCGCGCCGGTGTTCAGGCAGAATATTGCACAGA
ACCTTATCCACGGGCTTTCCCAACGCGCTGGAATAGTAGGGCCCTGTTCC
GCGCATTTCATCTGCATGCCCTTGACTTGATTGGCTCCCGCCCTTTTTTA
GTCGACGTCGTCCCCCGGTCCCGCCCTCCACTCTCGCCTTCGTCGAAATG
AATCCTACTATTTAGAAGTTGCCAATGCGCTCACACAAGTACCCGTCTGC
ATGTCATGTGCGTAACTTTTCGTTTTTTCCTAGATACTACAAAGTGCTAT
TGTACATGTACATAACAAGCCGGAGGGGGTCACGAGAAATAAAAATAAAA
TTACGGTGCCGCCTCCGCCGTTTCTGCCCCCCCCCCACCCCCTCGTGTTT
TGTGACAGGAACGGCAGGTTGAAACCCTCCGGCTCCGACGACGGCGGAGA
ATCCGCCGCTTACGGTGACCTGGAACAGCGAATCCGGGAGGAAGAACACC
CATGGGACAGCGACCTCCTACATCGTGGCAGCAGCAGCGGCGGCGGCGGC
GGCGACGGCGGCAGGCCACCGGCCTCCCCTCTGACACGGACATCAACTCG
TCGTGACTTATTACGTGGTCATCATCACCAGCGAGAACGGCAGCGAGAGC
TGCTACACCACCACCAGCGCGACGGGGGAAGCGGCATCGACACGCGACGG
CCAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11650:1481..2536+

>mRNA_L-elsbetiae_contig11650.1431.1 ID=mRNA_L-elsbetiae_contig11650.1431.1|Name=mRNA_L-elsbetiae_contig11650.1431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig11650:1481..2536+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGATTGCGATGTCCCCGCACCGTCGCTGGACCCAAGCGTCGAGAGGGT
CTTGATGGATTGGGTCCGGTCGAGAATCGACAGAAGGATTGCGATGTCCC
CGCACCGTCGCTGGACCCAAGCGTCGAGAGGGTCTTGATGGATTGGGTCC
GGTCGAGAATCGACAGGAACGGCAGGTTGAAACCCTCCGGCTCCGACGAC
GGCGGAGAATCCGCCGCTTACGGTGACCTGGAACAGCGAATCCGGGAGGA
AGAACACCCATGGGACAGCGACCTCCTACATCGTGGCAGCAGCAGCGGCG
GCGGCGGCGGCGACGGCGGCAGGCCACCGGCCTCCCCTCTGACACGGACA
TCAACTCGTCGTGACTTATTACGTGGTCATCATCACCAGCGAGAACGGCA
GCGAGAGCTGCTACACCACCACCAGCGCGACGGGGGAAGCGGCATCGACA
CGCGACGGCCAGCCGAACGGCAGGTTGAAACCCTCCGGCTCCGACGACGG
CGGAGAATCCGCCGCTTACGGTGACCTGGAACAGCGAATCCGGGAGGAAG
AACACCCATGGGACAGCGACCTCCTACATCGTGGCAGCAGCAGCGGCGGC
GGCGGCGGCGACGGCGGCAGGCCACCGGCCTCCCCTCTGACACGGACATC
AACTCGTCGTGACTTATTACGTGGTCATCATCACCAGCGAGAACGGCAGC
GAGAGCTGCTACACCACCACCAGCGCGACGGGGGAAGCGGCATCGACACG
CGACGGCCAGCC
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