mRNA_L-elsbetiae_contig1165.1429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1165.1429.1
Unique NamemRNA_L-elsbetiae_contig1165.1429.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1165.1429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1165contigL-elsbetiae_contig1165:18246..20303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_003860.1
Exons5
Model size824
Cds size687
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.9437504-UTR-L-elsbetiae_contig1165:18245..182691622815367.9437504-UTR-L-elsbetiae_contig1165:18245..18269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1165 18246..18269 -
1691682864.5456169-UTR-L-elsbetiae_contig1165:18245..182691691682864.5456169-UTR-L-elsbetiae_contig1165:18245..18269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1165 18246..18269 -
1622815368.0143647-UTR-L-elsbetiae_contig1165:20190..203031622815368.0143647-UTR-L-elsbetiae_contig1165:20190..20303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1165 20191..20303 -
1691682864.609789-UTR-L-elsbetiae_contig1165:20190..203031691682864.609789-UTR-L-elsbetiae_contig1165:20190..20303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1165 20191..20303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.9554422-CDS-L-elsbetiae_contig1165:18269..183801622815367.9554422-CDS-L-elsbetiae_contig1165:18269..18380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 18270..18380 -
1691682864.5567904-CDS-L-elsbetiae_contig1165:18269..183801691682864.5567904-CDS-L-elsbetiae_contig1165:18269..18380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 18270..18380 -
1622815367.9646723-CDS-L-elsbetiae_contig1165:18520..185631622815367.9646723-CDS-L-elsbetiae_contig1165:18520..18563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 18521..18563 -
1691682864.565814-CDS-L-elsbetiae_contig1165:18520..185631691682864.565814-CDS-L-elsbetiae_contig1165:18520..18563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 18521..18563 -
1622815367.974052-CDS-L-elsbetiae_contig1165:18956..190151622815367.974052-CDS-L-elsbetiae_contig1165:18956..19015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 18957..19015 -
1691682864.575013-CDS-L-elsbetiae_contig1165:18956..190151691682864.575013-CDS-L-elsbetiae_contig1165:18956..19015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 18957..19015 -
1622815367.9903603-CDS-L-elsbetiae_contig1165:19229..195111622815367.9903603-CDS-L-elsbetiae_contig1165:19229..19511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 19230..19511 -
1691682864.5846696-CDS-L-elsbetiae_contig1165:19229..195111691682864.5846696-CDS-L-elsbetiae_contig1165:19229..19511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 19230..19511 -
1622815368.0024328-CDS-L-elsbetiae_contig1165:19998..201901622815368.0024328-CDS-L-elsbetiae_contig1165:19998..20190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 19999..20190 -
1691682864.598723-CDS-L-elsbetiae_contig1165:19998..201901691682864.598723-CDS-L-elsbetiae_contig1165:19998..20190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1165 19999..20190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1165.1429.1prot_L-elsbetiae_contig1165.1429.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1165 18270..20190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1165.1429.1

>prot_L-elsbetiae_contig1165.1429.1 ID=prot_L-elsbetiae_contig1165.1429.1|Name=mRNA_L-elsbetiae_contig1165.1429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MFKAMAQALLEPQPDQEPMQSNVVVYEEEPVPSQPQDRPHMSLPAADPAG
FYTDSAFFAKAPTKASRKSCVLCGNAEADVVCFSCSRFYGAGGGKFCLCC
FQACHPFYRVEHKWTRLENMDQQAYATSIERNIADIRGLLHVASNWRGEL
HTQDADTKGDDAIKEVARLDDALSIKIRDLKDLTCEDEDRTKVEASAMSC
LERSARLFQKRYEERAVADAEAGCGASW*
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mRNA from alignment at L-elsbetiae_contig1165:18246..20303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1165.1429.1 ID=mRNA_L-elsbetiae_contig1165.1429.1|Name=mRNA_L-elsbetiae_contig1165.1429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig1165:18246..20303- (Laminarionema elsbetiae ELsaHSoW15)
CGGCAAGTTTCGTGCCGTTTCGTGCCAACCGGCATGTTTTCGCCGCACTT
TTTCCCTCTCCGGCGTTTGTCGGCCCCCGCGCTGGGCCGGGGTGTGCACA
CTAGGCCTTTTCGATGTTTAAAGCAATGGCGCAAGCGCTCTTAGAGCCAC
AGCCTGACCAGGAACCCATGCAATCTAACGTCGTGGTCTACGAGGAGGAG
CCAGTACCATCTCAACCACAAGACCGGCCACATATGTCGTTACCTGCAGC
TGACCCCGCTGGGTTTTACACTGACTCGGCATTCTTCGCTAAGGCTCCTA
CCAAGGTATGAACATTGTTTGTGCTTGAACGGTATTTGCTGTTGGCTACA
TCGTTGAGACTGAAAAAACGCGTACGCACCACAGATTACAATGTTATCGA
GATGTTGTAGATCTACAAATGTAGAACCAATTGTAATCTCGACGTCTCGA
CCAGTCAGCGCTGGCTGGTCTACTGGTTTGATCTCGGCTTTGATCAGACA
AAATATTGTACATAGTCTAGATCAGACAAAATAGTAATAGTCTAGACTTG
TAGCAGAAGATAGTTTAATAATGTACCAGGTACATGATGTTGAAAAAAAC
TTCTTCGTGCTGATTGATCTCGGAAGACGTTTACTCTGTGAATGAACTAA
TGCCCCAAGATCAGCCGCCGCGGCTATACATGATGCAATGCGACAATTTG
TTTACTCGTGACCCTTACCGCGTTTGTGCGTTTGCTCTTTCGCCCAAATA
ATGAACTGTATGCAAACTTGGTTCACGATTTACGCTCGCCAGGCCTCGAG
GAAAAGCTGTGTGCTATGCGGCAATGCTGAAGCGGATGTAGTCTGTTTCA
GCTGTTCCAGATTTTATGGGGCCGGAGGCGGGAAGTTCTGTCTGTGTTGC
TTCCAGGCATGCCACCCGTTTTACAGGGTGGAGCATAAGTGGACGCGGTT
AGAGAACATGGACCAACAAGCATACGCAACAAGTATCGAGAGGAACATTG
CCGATATCCGAGGATTGCTTCATGTTGCTTCGAATTGGAGAGGCGAGCTT
CATACCCAGGACGCCGACACGAAGGTAGGATATTTCTTCGCATATTTCAG
CGTACAACTGCATAAGCCTACACCTGACAGCAGCAGCAGCAGCAGCAGCA
GAAAATTACTTGTGTATGTTGTTGGGTGGACCGTGGTAAGGTTGTGCACC
TCCACCATCACATAAAAACGCAGTCCGTGCGCCCCCTCACGTGGGTTCCT
TTCTTCTCGCACACAACACCCCTCTCTCTGTCGAAAAGGGTGACGATGCC
ATCAAGGAAGTGGCCCGGCTTGACGATGCTCTCTCCATCAAAATCAGGTA
GGGGTGGGAACGGACTAAAGGAGGGCTTATCAAAATAAGCACCCGACGAA
GCTTTTTGCCGGTGGCATGGTACTGGAGGTAGCCAATTATTATGGCGTTT
GAACGAGTACAAGCTGTAGGGCACATGTAGCCTGACTGCAGAGACCCCGC
ATCAGCTCGTGCCTCACTCTTTGTATCGTGCTGTACACGGAGGAACTTTA
AAATAGAACGGAGAGCGAAACGAGACCCCGGGAACTGTAACTGCGGTCTG
CACTTATCCACGCAGCACCCTGGTAGAAAGGAGCACTATTACCAGCCCCC
GTACATAGTGTCATCGTATCGGTTAGATGAACTCGTACCCAACTTTCGCA
AACCCGACCTCGTGGCACCCACGCATTTCATTCCTAACAGAGATCTAAAG
GACTTGACTTGCGAAGATGAAGACCGCACGAAGGTGGGCTATCTGTGACT
TCAACCAAAGTAAATATGTACCCTTCGTGACGTTCCATGCGGGCATGGTC
TACGAGATTTATCTCATTAGAGTACCGGCCGCTTCTATTTATTGTGCCCA
AACTTCTTCTTCTGTTTCACCAGGTGGAGGCGTCCGCGATGTCGTGTTTG
GAGCGGAGCGCGCGACTATTTCAGAAGAGATACGAAGAGAGAGCGGTTGC
CGATGCAGAGGCGGGTTGTGGTGCAAGTTGGTGAATAGGGGGTTTGGCTG
AACGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1165:18246..20303-

>mRNA_L-elsbetiae_contig1165.1429.1 ID=mRNA_L-elsbetiae_contig1165.1429.1|Name=mRNA_L-elsbetiae_contig1165.1429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig1165:18246..20303- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTAAAGCAATGGCGCAAGCGCTCTTAGAGCCACAGCCTGACCAGGA
ACCCATGCAATCTAACGTCGTGGTCTACGAGGAGGAGCCAGTACCATCTC
AACCACAAGACCGGCCACATATGTCGTTACCTGCAGCTGACCCCGCTGGG
TTTTACACTGACTCGGCATTCTTCGCTAAGGCTCCTACCAAGATGTTTAA
AGCAATGGCGCAAGCGCTCTTAGAGCCACAGCCTGACCAGGAACCCATGC
AATCTAACGTCGTGGTCTACGAGGAGGAGCCAGTACCATCTCAACCACAA
GACCGGCCACATATGTCGTTACCTGCAGCTGACCCCGCTGGGTTTTACAC
TGACTCGGCATTCTTCGCTAAGGCTCCTACCAAGGCCTCGAGGAAAAGCT
GTGTGCTATGCGGCAATGCTGAAGCGGATGTAGTCTGTTTCAGCTGTTCC
AGATTTTATGGGGCCGGAGGCGGGAAGTTCTGTCTGTGTTGCTTCCAGGC
ATGCCACCCGTTTTACAGGGTGGAGCATAAGTGGACGCGGTTAGAGAACA
TGGACCAACAAGCATACGCAACAAGTATCGAGAGGAACATTGCCGATATC
CGAGGATTGCTTCATGTTGCTTCGAATTGGAGAGGCGAGCTTCATACCCA
GGACGCCGACACGAAGGCCTCGAGGAAAAGCTGTGTGCTATGCGGCAATG
CTGAAGCGGATGTAGTCTGTTTCAGCTGTTCCAGATTTTATGGGGCCGGA
GGCGGGAAGTTCTGTCTGTGTTGCTTCCAGGCATGCCACCCGTTTTACAG
GGTGGAGCATAAGTGGACGCGGTTAGAGAACATGGACCAACAAGCATACG
CAACAAGTATCGAGAGGAACATTGCCGATATCCGAGGATTGCTTCATGTT
GCTTCGAATTGGAGAGGCGAGCTTCATACCCAGGACGCCGACACGAAGGG
TGACGATGCCATCAAGGAAGTGGCCCGGCTTGACGATGCTCTCTCCATCA
AAATCAGGGTGACGATGCCATCAAGGAAGTGGCCCGGCTTGACGATGCTC
TCTCCATCAAAATCAGAGATCTAAAGGACTTGACTTGCGAAGATGAAGAC
CGCACGAAGAGATCTAAAGGACTTGACTTGCGAAGATGAAGACCGCACGA
AGGTGGAGGCGTCCGCGATGTCGTGTTTGGAGCGGAGCGCGCGACTATTT
CAGAAGAGATACGAAGAGAGAGCGGTTGCCGATGCAGAGGCGGGTTGTGG
TGCAAGTTGGTGAGTGGAGGCGTCCGCGATGTCGTGTTTGGAGCGGAGCG
CGCGACTATTTCAGAAGAGATACGAAGAGAGAGCGGTTGCCGATGCAGAG
GCGGGTTGTGGTGCAAGTTGGTGA
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