mRNA_L-elsbetiae_contig11641.1427.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11641.1427.1
Unique NamemRNA_L-elsbetiae_contig11641.1427.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11641.1427.1 vs. uniprot
Match: A0A6H5KHJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ4_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.790e-34
Identity = 79/192 (41.15%), Postives = 107/192 (55.73%), Query Frame = 2 
Query:   35 KAAGGLPGLVEKAQTMKNLLDAEGEIPEKTKAIVKSGMSRAGSAVKQLGHRHHRQQD----------GTNALRALGFAIIGKDGKRIAPASRHRSNPSSRAEMMEGMVYTIKGAYSGEHVNVATWDADLRLDSMKCCGLAECGTAQSANGLEYAFAVFRGAGEIKWRGYLEAGVPDVSCAGNINMGPDAVWF 580
            K A     LVE AQ ++ L    G   +  K   K+ +   G  +    HRH   ++          G+NALR  GF+I+    + +   SR   NP SR E ME +V ++KGAY    VNVA WD  L ++  +C  + E GTA++ +GL Y +AVFRG G IKW+G L+ GVPDV C GN+NMGPD+VWF
Sbjct:   15 KHADKAVSLVEGAQEVRELCRTAGLNHKNVKNAFKAVVG--GGVLAFASHRHSTHEEEQILAMMSGPGSNALRVRGFSIL-PFKEHVKRVSRRYDNPDSRIEAMEAVVTSVKGAYYPYQVNVAAWDVGLGMEEPECYDMVESGTAKNPDGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWF 203
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BLAST of mRNA_L-elsbetiae_contig11641.1427.1 vs. uniprot
Match: D7G8T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T1_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 6.610e-34
Identity = 76/184 (41.30%), Postives = 106/184 (57.61%), Query Frame = 2 
Query:   56 GLVEKAQTMKNLLDAEGEIPEKTKAIVKSGMSRAGSAVKQLGHRHHRQQD---------GTNALRALGFAIIGKDGKRIAPASRHRSNPSSRAEMMEGMVYTIKGAYSGEHVNVATWDADLRLDSMKCCGLAECGTAQSANGLEYAFAVFRGAGEIKWRGYLEAGVPDVSCAGNINMGPDAVWF 580
            GLVE AQ +++L  A G   +  K   KS +    +A     H  H +++         G+N LR  GF+I+    + +   SR   NP SR E ME +V ++KGAY    +NVA WD  L ++  +   + E GTA++ +GL Y +AVFRG G IKW+G L+ GVPDV C GN+NMGPD+VWF
Sbjct:   41 GLVEGAQEVRDLCRAAGLHHKDVKHAFKSVVGGGVAAFASHRHSSHEEKEQMLAMMSGPGSNVLRVRGFSIL-PFKEHVKRVSRRHDNPDSRIEAMEAVVTSVKGAYYPHKINVAAWDVGLGMEEPELYDMVESGTAKNPDGLAYRYAVFRGQGVIKWKGGLQTGVPDVCCTGNLNMGPDSVWF 223
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11641.1427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHJ4_9PHAE3.790e-3441.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8T1_ECTSI6.610e-3441.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11641contigL-elsbetiae_contig11641:2131..5499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2005
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11641.1427.1prot_L-elsbetiae_contig11641.1427.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11641 2159..4137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.5716393-UTR-L-elsbetiae_contig11641:2130..21581622815367.5716393-UTR-L-elsbetiae_contig11641:2130..2158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11641 2131..2158 +
1691682864.2209923-UTR-L-elsbetiae_contig11641:2130..21581691682864.2209923-UTR-L-elsbetiae_contig11641:2130..2158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11641 2131..2158 +
1622815367.635088-UTR-L-elsbetiae_contig11641:4137..54991622815367.635088-UTR-L-elsbetiae_contig11641:4137..5499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11641 4138..5499 +
1691682864.2785842-UTR-L-elsbetiae_contig11641:4137..54991691682864.2785842-UTR-L-elsbetiae_contig11641:4137..5499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11641 4138..5499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.5848882-CDS-L-elsbetiae_contig11641:2158..22001622815367.5848882-CDS-L-elsbetiae_contig11641:2158..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 2159..2200 +
1691682864.233514-CDS-L-elsbetiae_contig11641:2158..22001691682864.233514-CDS-L-elsbetiae_contig11641:2158..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 2159..2200 +
1622815367.5978453-CDS-L-elsbetiae_contig11641:2903..30351622815367.5978453-CDS-L-elsbetiae_contig11641:2903..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 2904..3035 +
1691682864.244084-CDS-L-elsbetiae_contig11641:2903..30351691682864.244084-CDS-L-elsbetiae_contig11641:2903..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 2904..3035 +
1622815367.6099849-CDS-L-elsbetiae_contig11641:3459..37631622815367.6099849-CDS-L-elsbetiae_contig11641:3459..3763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 3460..3763 +
1691682864.256549-CDS-L-elsbetiae_contig11641:3459..37631691682864.256549-CDS-L-elsbetiae_contig11641:3459..3763Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 3460..3763 +
1622815367.6225643-CDS-L-elsbetiae_contig11641:4000..41371622815367.6225643-CDS-L-elsbetiae_contig11641:4000..4137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 4001..4137 +
1691682864.2703993-CDS-L-elsbetiae_contig11641:4000..41371691682864.2703993-CDS-L-elsbetiae_contig11641:4000..4137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11641 4001..4137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11641.1427.1

>prot_L-elsbetiae_contig11641.1427.1 ID=prot_L-elsbetiae_contig11641.1427.1|Name=mRNA_L-elsbetiae_contig11641.1427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MLKAAGGLPGLVEKAQTMKNLLDAEGEIPEKTKAIVKSGMSRAGSAVKQL
GHRHHRQQDGTNALRALGFAIIGKDGKRIAPASRHRSNPSSRAEMMEGMV
YTIKGAYSGEHVNVATWDADLRLDSMKCCGLAECGTAQSANGLEYAFAVF
RGAGEIKWRGYLEAGVPDVSCAGNINMGPDAVWFGNTDASPHNDVSDLVE
LVSR*
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mRNA from alignment at L-elsbetiae_contig11641:2131..5499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11641.1427.1 ID=mRNA_L-elsbetiae_contig11641.1427.1|Name=mRNA_L-elsbetiae_contig11641.1427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3369bp|location=Sequence derived from alignment at L-elsbetiae_contig11641:2131..5499+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGCTGTGACTCCCAAGGAAGAAAATGTTGAAGGCTGCGGGAGGGT
TACCGGGCCTTGTGGAAAAGGTGAGTTCTGCAGAGATGGATGTATTGTGA
TTTACATTCGGCTGACGCTCTGGGGCACACATAGTGTATGTAATTTGCTG
TGGGTTTATTTGCACTTAGTATGGCTTAGATTCGGCCGGTCTCTTCTTGT
ACAACTCACTCTCGGGCGAAGAGTGAAAGCGGGCAAACACTCGTTGGTTG
CACCGTTACTTTCTTGAATGTGTGCGGCGAACTCCTGCCCCGTGGGTCTC
TCCCCCTTTCCTACATCTTCCAACGGCGATGGCTTCGAGACCTTGTCCGG
GTTTGGACTCGAACAATTTTATGTCGGGTTTCTTGAAGATTGTTTTTTGC
GAGTGAGCACACTCCGCAACAGAGATAAATTACATAGATCATGCGGTTGA
TTCTTGGTCGATGATCTTGGTTCTTGGCGCTAAATATACCTTGTCTGTCT
TGACGTGTCGTGCAGAGGTTGATAGGCACTTTATTCTCTTGTCTAAATGG
ACTTACCTACGCACGTAACGGCGGGGGCTTCGACCATAACTGTTTTTCTC
TCTTTCATAGTTCGTGTGCGTTGCTTGTACGATCTTAGCAAGTTATTGGG
TAGTTTGCCTTCGAAGTTGAACTCAGCATTCATGGAGATGGTGGCGTCCA
TTGAAATAGCAGCAGCGACAGCAACAACAACTGCTGTAACAATGACGTAT
TTCCGCCATTGCTGTTTGTGAAGGCCCAGACGATGAAGAACCTCCTCGAT
GCCGAAGGGGAGATACCGGAAAAAACGAAGGCTATAGTCAAGTCGGGTAT
GTCCAGGGCGGGCTCCGCGGTCAAACAGCTTGGCCACCGCCATCACCGGC
AACAGGTATGGCGAATGAAGCTCAGTACCTACGAATCAATCGATAGCTGG
TAGATTGCGTTCATGCGATGAGGCGCGACCCCAGCCTCTCCACTTGGAAA
TTAATACGAAGTGATACTTAAGAATGGCCGGTGTAGAGGCCGACGATTTG
CTGATAGCTTGCCCGGGGATTTTTGGCTGCCCTATCGTCTGACAACGAGC
TAGACCATGGTGTCAATGTGTACACCCGTAGCCTGCACGACCCGCTACAC
GTGATGGTTCACAGCAGTTCTTTCATTTTGCCGTTGCGGACCGTTAGCGA
CAACGCAATTTTTCGGTTATGAAGATGAGCGCAAGCTTGCTGCTTGTTGT
CGGCACTACGGATGAATCATACAACTCAACCGAGGGAGCATGCTGACCGC
CTGCTGGCTATTCCTCACCGGTTCTCCAGGATGGTACAAATGCTCTTAGA
GCTCTAGGCTTCGCCATCATCGGAAAGGACGGCAAGCGCATCGCGCCAGC
ATCGCGCCACCGCAGCAACCCCAGCTCTCGGGCGGAAATGATGGAGGGGA
TGGTCTATACGATCAAAGGGGCATACTCCGGGGAACATGTTAATGTGGCC
ACGTGGGACGCCGATCTTAGGCTGGACTCGATGAAGTGCTGCGGGCTTGC
GGAATGCGGCACGGCGCAGAGTGCAAACGGTCTGGAGTATGCGTTCGCGG
TTTTCCGCGGAGCGGGGGAAATCAAGTGGAGGGGTGAGACTTGGCCTCCC
GGTACGGTACACCGAAATAGAGTCTGTGCTTGCTGCCAGACGGGTATCTC
TTATTTTTGGGGTGACGTCAATCTTGGCTGTTGAATGTGACGCTCTATGT
TGATGTGGTTATTTCGAACGCCCTTGTTGACTGGCCTCAAAGTCAGCGAC
GCAGCTCCTCTGTTAAAACATTCGGCAAACCGATGCATTCCCGGCCCTCG
CCAACTTCAAATCTCTACAGGATACCTTGAGGCGGGTGTTCCCGACGTCA
GCTGCGCAGGGAACATCAACATGGGCCCTGATGCCGTCTGGTTTGGGAAC
ACGGACGCTTCTCCTCACAACGACGTGTCTGATCTTGTTGAGCTCGTGTC
GAGATGAAGGCAGGAAAAGCTACATTTTTTCATTGATTTTTTTTAAAGGG
CTGTGGGGGGGGGGGTATCTACTCGCCCCGCACGCCTCTCAGATATTTGC
TCTACTCTCCGAGCCAGGCTCGCGAAACACCGAGGGCAAAACGCCGTGGG
ATCTCCCGCTGGTCGTACACATATGGCAAAGGTGGAACTTCTTATTTGGA
ATGTTGGGTATATCGTGTATGTTTCGTTGCGTAGAATGACAGCTCCGAAA
GAATTACAGCTGGTTTTTTGGTGGAAGTGGTACGACAAATCTCCCCAAAG
CGCAGAAGTTCTGTGATACCTCGTGTCATGATCTGACTCGACCACCGCTC
ATACTCGCCGCGAAAAATGATCACTTGGTGCCTCGCTCACGACATCGAGT
GACGCTTTTTAGACCTGCCATCCCCGAGGGGGGACCGTGGAGAGGAGCAG
TACACACTAGCTCGGTGGTTGGGGTGCACGCAGTTTTGAATTACTCTTTG
TTTCGGTCGCGACGGTCCTTTGTACGGTACGTCCGCGAGAAATATTAAGT
GTAGGTATTGAGCCGGTCTTTGGCAATTGCAAGTCGGCCGGGCGGGGGGG
AGAGGGGGGTGAGGTGCGTTGGTTGGAGCCCGGCACTACTGCTATGTGCA
GTTTACGTGGGTTTGGAATATCCATCCCGATACATGTTTTGAAGTGAGGG
ACGTTTTGATGTACACGACATCCATACGCTCACACCTGTCGGCTCTTGCG
CGCTTTACTTGTGGCTGGTGAAGGCTAATGGCGACCCTGTCTTTCTCGAG
CGCGTGTTTGAGGTTTCATGAGAAATAGGCACATTTGCACATTTGTTTTT
GTGATTTTCGGAGCAAGGGAGGCAGGCACATGCCGCACAGCAGCGCCTAG
GTGGTATACCGTTGTTAACTCACGCTGGACACGGTGGGCCGTCATGGGGG
GGCTGGCAACGCAGTTTTTATGCTCGGTGCCCAAACACTTGTTTCACGTT
CACCGGGCCGCTGTGTTGCACATTTCGTAGATGCAGTTGGATTCGGATAG
GTTTACGTGCGGGTACTGGTGCTGTTTCTTGAAGCCCTAGATATTGTACT
TCGAAGTAGGCGGCGGTTGGTCTGGTGGATGACACGCTTGAAGATGCAGC
TTTGTGTTCGATTCTCGATGACCCCTGCCATTGTGTTGCTCGGCATCTTT
CCTTTCGACGGCACGATCCTCCAGACGCAAGCCTCGGAAGTTGGCTCTTT
CTAGGCCCGAATCAGAGAGTAAACGGAGCGTGACTGGCGGACACAAGGGC
GAGGTTCTAATGTCGGAGAACAAACATGGGAGCAAATGCTTTGACAACCT
GTGTGTGTTTCGAACATCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11641:2131..5499+

>mRNA_L-elsbetiae_contig11641.1427.1 ID=mRNA_L-elsbetiae_contig11641.1427.1|Name=mRNA_L-elsbetiae_contig11641.1427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig11641:2131..5499+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAAGGCTGCGGGAGGGTTACCGGGCCTTGTGGAAAAGATGTTGAA
GGCTGCGGGAGGGTTACCGGGCCTTGTGGAAAAGGCCCAGACGATGAAGA
ACCTCCTCGATGCCGAAGGGGAGATACCGGAAAAAACGAAGGCTATAGTC
AAGTCGGGTATGTCCAGGGCGGGCTCCGCGGTCAAACAGCTTGGCCACCG
CCATCACCGGCAACAGGCCCAGACGATGAAGAACCTCCTCGATGCCGAAG
GGGAGATACCGGAAAAAACGAAGGCTATAGTCAAGTCGGGTATGTCCAGG
GCGGGCTCCGCGGTCAAACAGCTTGGCCACCGCCATCACCGGCAACAGGA
TGGTACAAATGCTCTTAGAGCTCTAGGCTTCGCCATCATCGGAAAGGACG
GCAAGCGCATCGCGCCAGCATCGCGCCACCGCAGCAACCCCAGCTCTCGG
GCGGAAATGATGGAGGGGATGGTCTATACGATCAAAGGGGCATACTCCGG
GGAACATGTTAATGTGGCCACGTGGGACGCCGATCTTAGGCTGGACTCGA
TGAAGTGCTGCGGGCTTGCGGAATGCGGCACGGCGCAGAGTGCAAACGGT
CTGGAGTATGCGTTCGCGGTTTTCCGCGGAGCGGGGGAAATCAAGTGGAG
GGGATGGTACAAATGCTCTTAGAGCTCTAGGCTTCGCCATCATCGGAAAG
GACGGCAAGCGCATCGCGCCAGCATCGCGCCACCGCAGCAACCCCAGCTC
TCGGGCGGAAATGATGGAGGGGATGGTCTATACGATCAAAGGGGCATACT
CCGGGGAACATGTTAATGTGGCCACGTGGGACGCCGATCTTAGGCTGGAC
TCGATGAAGTGCTGCGGGCTTGCGGAATGCGGCACGGCGCAGAGTGCAAA
CGGTCTGGAGTATGCGTTCGCGGTTTTCCGCGGAGCGGGGGAAATCAAGT
GGAGGGGATACCTTGAGGCGGGTGTTCCCGACGTCAGCTGCGCAGGGAAC
ATCAACATGGGCCCTGATGCCGTCTGGTTTGGGAACACGGACGCTTCTCC
TCACAACGACGTGTCTGATCTTGTTGAGCTCGTGTCGAGATGAGATACCT
TGAGGCGGGTGTTCCCGACGTCAGCTGCGCAGGGAACATCAACATGGGCC
CTGATGCCGTCTGGTTTGGGAACACGGACGCTTCTCCTCACAACGACGTG
TCTGATCTTGTTGAGCTCGTGTCGAGATGA
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