mRNA_L-elsbetiae_contig1164.1424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1164.1424.1 vs. uniprot
Match: D7FU43_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU43_ECTSI) HSP 1 Score: 609 bits (1570), Expect = 1.330e-207 Identity = 378/643 (58.79%), Postives = 449/643 (69.83%), Query Frame = 2 Query: 272 MGAACSKSKAASVANKENMAKVEDMLLVVPNG-------------GKNEGPDTAESTSLGEIPETLEALEEDPVREGAVLGVGALDSTAFLSPEPEQEEGVAAGDSALVAVENCV---AGLRRGGHAGDGS--DGMRCEDNKSAWIAQNLDVVPQGAA-VEVDQLKQLPGLEECLFELLQERARQLSAMEILIGELRRREAESTKASHDARALTARLECAEQDRSALERRAQAAGEEHRVDRARWFVHKQELETRCVQLESRDIQYRASIRKKEVEYGRLQDSLRRTVDKSTNFIARGTRGKDATK-GRGIETNLELSPGEATTEGGRNPLGGVLNEQAMCKVEELETENAGLRSMLVDLQGEVMDLKGYHDRHGDLVSAGRGRGSIEGG-IWSAGGVASPMEPFPEDVIEGMPGDWLERQVGEDTAQQIKGMRGALKRVLGDEDKEGGTGDDSMSQEDLVSLMSQLREARSLLREQDAIMFAAIFDRPGI--DGANRERCVCGADAGG-LGGSGVWDSLERLEQEREEXXXXXXXXXXXXXRFMEEAVRRDSKNFVYSYPPATPSPGPPAPRDTRYATPTHGSGQKQQQLGGGARLTVAXXXXXTPGRGARGAGDAAGLPLMTFTPPAASPDTTKLLGQLGI 2128 MGA CSKS +VANKENM ++ D +++ PNG ++ D S G + +E+D AVLG ALDSTAFLSP P VAA + A N V A G AG M+ ED +SAW+A+NL ++P+G + +E ++LK+LPGLE+CL ELL ERAR LS ME L +LRRREAE+TKA+HD +ALTARLEC+EQDRSALERR +A GEEHRV+RARWFVHKQELETRCVQLESRD QYRASIRKKEVEYGRLQDSLRR V+K + ++RG GK +K RGIE+NLELSPG ATTE G++PLG VLN QA KV ELE EN LR+ML DLQ EVM+LK Y DRHGDLVSA RG SIEGG IW GG S ++P E+VIEGMP DWLERQ GE+ A+Q+KGMR A+KRVLG+ ++EGG+ DDSMS ED+ SL+SQLREARSLLREQDAIMFAAIFD+PG AN++RC+ G D G LGGSG WDSLERLEQ+REE +F+EEAV RDSK+FV++ PPATP+ D+RYATP H G+ LG G +LTVA GRG G+A L M+FTPP ASPDTTKLLG LGI Sbjct: 1 MGAMCSKS-GGNVANKENMGQLPDEMML-PNGVDSTMAGSGGSVDAQSNSRDRGLEASKGATASSNGQVEDDGA---AVLGA-ALDSTAFLSPAPAHGAQVAAAEGTSPAGSNDVEPGAAAVVNGIAGQDKVVSDMQLED-RSAWVARNLGMLPRGGSEIEAEKLKELPGLEDCLHELLSERARHLSTMETLSSQLRRREAEATKAAHDNKALTARLECSEQDRSALERRGRAEGEEHRVERARWFVHKQELETRCVQLESRDTQYRASIRKKEVEYGRLQDSLRRAVEKGSGVVSRGA-GKGGSKCSRGIESNLELSPGAATTEAGKHPLGAVLNNQAESKVGELEGENFALRNMLQDLQREVMELKDYQDRHGDLVSAERG--SIEGGGIW--GGRMS-VDPLAEEVIEGMPADWLERQFGEENARQMKGMRCAVKRVLGEGEQEGGSADDSMSAEDVTSLVSQLREARSLLREQDAIMFAAIFDKPGAGTSAANKDRCMFGGDDGVYLGGSGAWDSLERLEQQREELGKERLKLEADKAKFLEEAVHRDSKSFVFACPPATPT------ADSRYATPVHHHGKA---LGNG-KLTVAAASPAPNGRG----GEAGNLSRMSFTPPTASPDTTKLLGALGI 616
BLAST of mRNA_L-elsbetiae_contig1164.1424.1 vs. uniprot
Match: A0A4D9D4T5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4T5_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.800e-9 Identity = 108/417 (25.90%), Postives = 173/417 (41.49%), Query Frame = 2 Query: 608 DGSDGMRCEDNKSAWIAQNLDVVPQG------AAVEVDQLKQLPGLEECLFELLQE---RARQLSAMEI-LIGELRRREAESTKASHDARALTARLECAEQDRSALERRAQAAGEEHRVDRARWFVHKQELETRCVQLESRDIQYRASIRKKEVEYGRLQDSLRRTVDKSTNFIARGTRGK-----DAT-KGRGIETNLEL-SPGEATTEGGRNPLGGVLNEQAMCKVEELETENAGLRSMLVDLQGEVMDLKGYHDRHGDLV--------------SAGRGRGSIEGGIWSAGGV----------ASPMEPFPEDVIEGMPGDWLERQVGE-------DTAQQIKGMRGALKRVLGDE------DKEGGTGDDSMSQE------DLVSLMSQLREARSLLREQDAIMFAAIFDRPG 1678 +G + ++ W+ QNL G + E+D+ LP + L LL + RA+ L + + L+ L +E+ + SH+ +L ++E A DR A E + E RW K EL R +L +DI RA ++KK+VEY +LQ LR S + T G D T K + + +L P A E R L QA+ L ENA LR L L EV L+ DR+GDLV + RG+ + + + G S + F + + MP +WL + VGE + ++ + MR + G + +KEG S++ E +L L ++L+ L+ +Q+ ++ A+F+ G Sbjct: 56 EGENTESSTEDMFGWLQQNLRTEMLGGESNSLSQAEIDEA--LPMIPRTLLPLLYKLVNRAQMLQSQNMELVFNLNTHRSEAERLSHERASLLNKVESAALDRQAAESLLASVRTEKTASEKRWGEEKNELNGRITRLTWKDITIRAQLKKKDVEYEKLQKQLRLGSATSNGGGTKATSGGRIKNVDITPKAQALGCSLTTHKPTLAPDEASRASLEATYQRQAL-----LLEENAELRDTLQCLYAEVKSLQ---DRYGDLVEEIENCRSRQKEELAKSRGKDPV---LQAPDGEEEDSVLLHRPTSAVRQFHKGAFK-MPAEWLGQAVGEALRADMAELGRRYERMRDMVMEPQGQDAEREKKEKEGTDALGSLTAEKRALRHELRLLRTRLQATEDLVAQQETVIKRALFEETG 458 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1164.1424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1164.1424.1 >prot_L-elsbetiae_contig1164.1424.1 ID=prot_L-elsbetiae_contig1164.1424.1|Name=mRNA_L-elsbetiae_contig1164.1424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=697bp MSDPCSAYPKATAWTFLLDTPAEEGGASATKAPPPGGGGHPRLAAAAAAAback to top mRNA from alignment at L-elsbetiae_contig1164:5399..20569- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1164.1424.1 ID=mRNA_L-elsbetiae_contig1164.1424.1|Name=mRNA_L-elsbetiae_contig1164.1424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15171bp|location=Sequence derived from alignment at L-elsbetiae_contig1164:5399..20569- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1164:5399..20569- >mRNA_L-elsbetiae_contig1164.1424.1 ID=mRNA_L-elsbetiae_contig1164.1424.1|Name=mRNA_L-elsbetiae_contig1164.1424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4182bp|location=Sequence derived from alignment at L-elsbetiae_contig1164:5399..20569- (Laminarionema elsbetiae ELsaHSoW15)back to top |