mRNA_L-elsbetiae_contig1163.1416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1163.1416.1
Unique NamemRNA_L-elsbetiae_contig1163.1416.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1163.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1163contigL-elsbetiae_contig1163:23032..23483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size454
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.5005722-CDS-L-elsbetiae_contig1163:23031..233791622815366.5005722-CDS-L-elsbetiae_contig1163:23031..23379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 23032..23379 +
1691682863.4896936-CDS-L-elsbetiae_contig1163:23031..233791691682863.4896936-CDS-L-elsbetiae_contig1163:23031..23379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 23032..23379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.51476-UTR-L-elsbetiae_contig1163:23379..234831622815366.51476-UTR-L-elsbetiae_contig1163:23379..23483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1163 23380..23483 +
1691682863.5039272-UTR-L-elsbetiae_contig1163:23379..234831691682863.5039272-UTR-L-elsbetiae_contig1163:23379..23483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1163 23380..23483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1163.1416.1prot_L-elsbetiae_contig1163.1416.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1163 23032..23379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1163.1416.1

>prot_L-elsbetiae_contig1163.1416.1 ID=prot_L-elsbetiae_contig1163.1416.1|Name=mRNA_L-elsbetiae_contig1163.1416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
QPPLHKCTVRVLRAKLGGRRVFRAVSAHVLTCQKSRVSTVEGPFPHPRQG
RESESNDCSFRISALWQICFGQCCCCCCWCCFSHYVALQSKTSLGARGHN
TNGTNLVCTPRGRHT*
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mRNA from alignment at L-elsbetiae_contig1163:23032..23483+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1163.1416.1 ID=mRNA_L-elsbetiae_contig1163.1416.1|Name=mRNA_L-elsbetiae_contig1163.1416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig1163:23032..23483+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCACCACTACATAAGTGTACTGTGAGAGTCTTGCGAGCCAAGTTGGG
CGGCCGGCGAGTGTTCCGTGCAGTCAGTGCTCACGTGCTCACGTGCCAAA
AATCGAGAGTTTCTACTGTCGAGGGGCCTTTTCCGCACCCGCGGCAAGGG
AGGGAGAGTGAGAGCAATGACTGCAGCTTTCGTATTAGTGCCCTCTGGCA
GATTTGTTTTGGCCAGTGTTGTTGTTGTTGTTGTTGGTGTTGTTTCTCAC
ATTATGTAGCTCTCCAGTCCAAAACATCCTTGGGGGCCCGTGGTCACAAT
ACAAATGGCACTAATTTAGTGTGTACCCCCCGGGGGAGGCATACATAACC
TTTTACTTGGATGAAGCAGAGGTATGTATGTAGCTGGCCGGTGTACTAAT
GTAGAACGAACAGCAGCGGTTAGTTGCGTGTCACGCGCGTATTCAGGGGG
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1163:23032..23483+

>mRNA_L-elsbetiae_contig1163.1416.1 ID=mRNA_L-elsbetiae_contig1163.1416.1|Name=mRNA_L-elsbetiae_contig1163.1416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1163:23032..23483+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCACCACTACATAAGTGTACTGTGAGAGTCTTGCGAGCCAAGTTGGG
CGGCCGGCGAGTGTTCCGTGCAGTCAGTGCTCACGTGCTCACGTGCCAAA
AATCGAGAGTTTCTACTGTCGAGGGGCCTTTTCCGCACCCGCGGCAAGGG
AGGGAGAGTGAGAGCAATGACTGCAGCTTTCGTATTAGTGCCCTCTGGCA
GATTTGTTTTGGCCAGTGTTGTTGTTGTTGTTGTTGGTGTTGTTTCTCAC
ATTATGTAGCTCTCCAGTCCAAAACATCCTTGGGGGCCCGTGGTCACAAT
ACAAATGGCACTAATTTAGTGTGTACCCCCCGGGGGAGGCATACATAACA
GCCACCACTACATAAGTGTACTGTGAGAGTCTTGCGAGCCAAGTTGGGCG
GCCGGCGAGTGTTCCGTGCAGTCAGTGCTCACGTGCTCACGTGCCAAAAA
TCGAGAGTTTCTACTGTCGAGGGGCCTTTTCCGCACCCGCGGCAAGGGAG
GGAGAGTGAGAGCAATGACTGCAGCTTTCGTATTAGTGCCCTCTGGCAGA
TTTGTTTTGGCCAGTGTTGTTGTTGTTGTTGTTGGTGTTGTTTCTCACAT
TATGTAGCTCTCCAGTCCAAAACATCCTTGGGGGCCCGTGGTCACAATAC
AAATGGCACTAATTTAGTGTGTACCCCCCGGGGGAGGCATACATAA
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