mRNA_L-elsbetiae_contig11629.1413.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11629.1413.1
Unique NamemRNA_L-elsbetiae_contig11629.1413.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: D8LB55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB55_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.650e-52
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 1
Query:    4 GDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLKGNRP 312
            GDRSTTWANKQALAAAI  VDPALA+RVL ER WRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVH NFEF+R+GKSMKLA AM+SITGSFET  +KG +P
Sbjct:   23 GDRSTTWANKQALAAAIGAVDPALAQRVLDERNWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHNNFEFVREGKSMKLAAAMSSITGSFETAVIKGTKP 125          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A0A835Z6A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.580e-27
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 QGDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLKGNRP 312
            +GDRSTT+ANK AL AA   + P  A  +  ER WR+ Y KY+ +HV ACL+ K+ AV +++AGL+WVH NFEFI+DGK+M L+ AM +I  +F+T  + G+ P
Sbjct:   23 EGDRSTTYANKAALKAASGAIRPEEAAAIDAERNWRKNYGKYLLRHVSACLEVKDGAVTAAEAGLQWVHDNFEFIKDGKTMPLSTAMATIKSTFKTATVTGSVP 126          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A0A7S2ABF6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2ABF6_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 3.680e-26
Identity = 47/100 (47.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    4 GDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLKG 303
            GDR+TT   K+  AAA++ V+   A+ + GE+ WR +Y KYV ++VE  LQS E A++ ++ GL+W++ NFEF+RDG++M L +A+ +I GSF TGF++G
Sbjct:   19 GDRNTTPTQKKLWAAAVQEVNQQAAKAIAGEKSWRHRYNKYVIQNVELSLQSPENALSIARNGLDWIYENFEFVRDGETMNLNEALENIKGSFYTGFVQG 118          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A0A0L0G802_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G802_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 1.130e-25
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 QGDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLKGNRP 312
            +G RST  A + A AAAI  +D    E+ L E+ WR+ YTK+V K VE  +   +AAV  ++AGLE +H  F+F+RDG +M ++ AMTSI+ SFETG +KG++P
Sbjct:   19 EGGRSTQIAGRAAYAAAIGAIDKIAGEKTLKEKSWRKGYTKHVTKFVELSVVDAKAAVIGAEAGLEHMHDQFQFVRDGTAMSISKAMTSISTSFETGIVKGSKP 122          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A0A7S3W6Z5_9SPIT (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3W6Z5_9SPIT)

HSP 1 Score: 94.7 bits (234), Expect = 1.760e-20
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   10 RSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLKGNRP 312
            RST    K+ LA A+  VD + A  V  E+ WR KY ++  K VE    S EAA+  + AGL++++  FEFIRDGK+  L DA+    GSF TGF+KGN+P
Sbjct:   29 RSTQTTGKEILAVALEAVDASAAAAVRSEKGWRFKYRRHFVKSVEVSASSPEAALKVAAAGLDYMYDKFEFIRDGKTYVLRDALAQFKGSFATGFIKGNKP 129          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: W7TMF0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.520e-19
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   16 TTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGS--FETGFLKG 303
            +T+ NK A AAA+  VD A   ++  E+QWRQKY KY+ + V+  L+S + AV+ ++ GLE+ + NFEFIRDGK+ KL +AM    GS  +ETG +KG
Sbjct:   62 STFGNKGAWAAAVGAVDKAEGLKIEKEKQWRQKYAKYIVRQVQVGLKSPKNAVSVAQGGLEYCYQNFEFIRDGKTYKLGEAMEKFGGSHSYETGVIKG 159          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A0A0L0D1Y2_THETB (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D1Y2_THETB)

HSP 1 Score: 81.6 bits (200), Expect = 6.910e-16
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 QGDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTS-ITGSFETGFLKGNRP 312
            +G RSTT A K   + A+ V D   A  + G+R WR  Y +++ + V+ C +SK++AV+ SKA L   H  FEF+RDG++  LA+AM      SF TG ++G  P
Sbjct:  210 KGKRSTTAACKDIFSTAVEVQDAEAAAAIRGDRGWRFSYPQHLLRMVQLCCKSKKSAVSISKALLRRAHSTFEFVRDGQTFTLAEAMDGRFADSFYTGVVEGEAP 314          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A0A7S1L587_NEODS (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1L587_NEODS)

HSP 1 Score: 81.6 bits (200), Expect = 6.920e-16
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   10 RSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLKG 303
            RSTT  N+    AA++ VDP  +     E+ WR  Y K+V ++VE   +S    +  +KAGL+++H NFEF+    +M +ADAMT I G+F+T  ++G
Sbjct:  224 RSTTIVNQGTYVAAVKDVDPEASAAAAKEKNWRYGYAKHVVRNVEISCKSNATCLKVAKAGLDYLHANFEFVTKDGTMSVADAMTKIPGTFQTYTIEG 321          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A9VE74_MONBE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VE74_MONBE)

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-15
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 GDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSF 282
            G RST+   +  LA ++  VDP  A  V+ ER WR  Y K+  ++V   L++ E A+  ++ GL+++H  FEF+RDGK M LA AM++IT SF
Sbjct:  292 GTRSTSSTGQAVLARSVMDVDPQAAVAVMKERNWRFGYGKHFIENVRISLRTPETALKVAQTGLDYMHNQFEFVRDGKVMSLATAMSTITASF 384          
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Match: A9V436_MONBE (GPI ethanolamine phosphate transferase 3 n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V436_MONBE)

HSP 1 Score: 80.9 bits (198), Expect = 1.340e-15
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 GDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEACLQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSF 282
            G RST+   +  LA ++  VDP  A  V+ ER WR  Y K+  ++V   L++ E A+  ++ GL+++H  FEF+RDGK M LA AM++IT SF
Sbjct:  632 GTRSTSSTGQAVLARSVMDVDPQAAVAVMKERNWRFGYGKHFIENVRISLRTPETALKVAQTGLDYMHNQFEFVRDGKVMSLATAMSTITASF 724          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11629.1413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LB55_ECTSI1.650e-5285.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6A9_9STRA1.580e-2750.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2ABF6_9EUKA3.680e-2647.00Hypothetical protein (Fragment) n=1 Tax=Stereomyxa... [more]
A0A0L0G802_9EUKA1.130e-2548.08Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S3W6Z5_9SPIT1.760e-2046.53Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
W7TMF0_9STRA1.520e-1947.96Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0L0D1Y2_THETB6.910e-1640.95Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S1L587_NEODS6.920e-1639.80Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A9VE74_MONBE1.300e-1543.01Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A9V436_MONBE1.340e-1543.01GPI ethanolamine phosphate transferase 3 n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11629contigL-elsbetiae_contig11629:5343..5654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue9.6e-44
Seed eggNOG ortholog2880.D8LB55
Hectar predicted targeting categoryother localisation
EggNOG OGs2A24T@1,2RY25@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.398564-CDS-L-elsbetiae_contig11629:5342..56541622815366.398564-CDS-L-elsbetiae_contig11629:5342..5654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11629 5343..5654 +
1691682863.4437308-CDS-L-elsbetiae_contig11629:5342..56541691682863.4437308-CDS-L-elsbetiae_contig11629:5342..5654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11629 5343..5654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11629.1413.1prot_L-elsbetiae_contig11629.1413.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11629 5343..5654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11629.1413.1

>prot_L-elsbetiae_contig11629.1413.1 ID=prot_L-elsbetiae_contig11629.1413.1|Name=mRNA_L-elsbetiae_contig11629.1413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
QGDRSTTWANKQALAAAIRVVDPALAERVLGERQWRQKYTKYVYKHVEAC
LQSKEAAVASSKAGLEWVHGNFEFIRDGKSMKLADAMTSITGSFETGFLK
GNRP
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mRNA from alignment at L-elsbetiae_contig11629:5343..5654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11629.1413.1 ID=mRNA_L-elsbetiae_contig11629.1413.1|Name=mRNA_L-elsbetiae_contig11629.1413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig11629:5343..5654+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGCGACCGGAGCACCACGTGGGCGAACAAGCAGGCCTTGGCAGCGGC CATCCGGGTGGTGGACCCTGCCCTCGCGGAGAGGGTTCTTGGCGAGCGGC AATGGAGGCAGAAGTACACCAAGTACGTGTACAAGCACGTAGAGGCATGC CTGCAGAGCAAGGAGGCGGCCGTGGCCAGCAGCAAGGCGGGGCTGGAGTG GGTGCACGGCAACTTCGAGTTCATTCGGGACGGCAAGAGCATGAAGCTTG CCGACGCCATGACGAGCATCACGGGGTCGTTCGAGACCGGATTCTTGAAG GGTAACAGGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11629:5343..5654+

>mRNA_L-elsbetiae_contig11629.1413.1 ID=mRNA_L-elsbetiae_contig11629.1413.1|Name=mRNA_L-elsbetiae_contig11629.1413.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig11629:5343..5654+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGCGACCGGAGCACCACGTGGGCGAACAAGCAGGCCTTGGCAGCGGC
CATCCGGGTGGTGGACCCTGCCCTCGCGGAGAGGGTTCTTGGCGAGCGGC
AATGGAGGCAGAAGTACACCAAGTACGTGTACAAGCACGTAGAGGCATGC
CTGCAGAGCAAGGAGGCGGCCGTGGCCAGCAGCAAGGCGGGGCTGGAGTG
GGTGCACGGCAACTTCGAGTTCATTCGGGACGGCAAGAGCATGAAGCTTG
CCGACGCCATGACGAGCATCACGGGGTCGTTCGAGACCGGATTCTTGAAG
GGTAACAGGCCCCAGGGCGACCGGAGCACCACGTGGGCGAACAAGCAGGC
CTTGGCAGCGGCCATCCGGGTGGTGGACCCTGCCCTCGCGGAGAGGGTTC
TTGGCGAGCGGCAATGGAGGCAGAAGTACACCAAGTACGTGTACAAGCAC
GTAGAGGCATGCCTGCAGAGCAAGGAGGCGGCCGTGGCCAGCAGCAAGGC
GGGGCTGGAGTGGGTGCACGGCAACTTCGAGTTCATTCGGGACGGCAAGA
GCATGAAGCTTGCCGACGCCATGACGAGCATCACGGGGTCGTTCGAGACC
GGATTCTTGAAGGGTAACAGGCCC
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