mRNA_L-elsbetiae_contig11629.1412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11629.1412.1
Unique NamemRNA_L-elsbetiae_contig11629.1412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11629.1412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11629contigL-elsbetiae_contig11629:3774..4258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.2276433-CDS-L-elsbetiae_contig11629:3773..41301622815366.2276433-CDS-L-elsbetiae_contig11629:3773..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11629 3774..4130 +
1691682863.3689046-CDS-L-elsbetiae_contig11629:3773..41301691682863.3689046-CDS-L-elsbetiae_contig11629:3773..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11629 3774..4130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.2413843-UTR-L-elsbetiae_contig11629:4130..42581622815366.2413843-UTR-L-elsbetiae_contig11629:4130..4258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11629 4131..4258 +
1691682863.3781023-UTR-L-elsbetiae_contig11629:4130..42581691682863.3781023-UTR-L-elsbetiae_contig11629:4130..4258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11629 4131..4258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11629.1412.1prot_L-elsbetiae_contig11629.1412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11629 3774..4130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11629.1412.1

>prot_L-elsbetiae_contig11629.1412.1 ID=prot_L-elsbetiae_contig11629.1412.1|Name=mRNA_L-elsbetiae_contig11629.1412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
RSSAPVCGRRGAREAGERFGGGRVSDREERVLTTGSPHCRNLACSKQAGT
WRVTYVNAVAASRKEAAHEYSQQPSRRSILDVSGNNSSAGIHTWVGYKIT
LGDIGAATSRLLAVLPIQ*
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mRNA from alignment at L-elsbetiae_contig11629:3774..4258+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11629.1412.1 ID=mRNA_L-elsbetiae_contig11629.1412.1|Name=mRNA_L-elsbetiae_contig11629.1412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig11629:3774..4258+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCTTCAGCACCTGTGTGTGGGCGCAGAGGGGCGCGGGAGGCCGGCGA
GAGGTTTGGGGGGGGGAGGGTAAGCGATAGAGAGGAGCGCGTGCTTACCA
CGGGTTCCCCGCATTGTAGGAATTTGGCATGTAGCAAGCAAGCGGGTACG
TGGCGTGTCACATATGTGAACGCAGTGGCTGCTTCGCGAAAAGAGGCAGC
CCACGAATACAGCCAACAGCCCTCACGCCGATCGATCTTGGATGTGTCAG
GAAACAACAGTAGTGCTGGCATTCACACATGGGTTGGCTACAAAATAACC
CTTGGTGATATTGGTGCTGCGACCAGCCGACTGCTTGCCGTGCTGCCTAT
TCAATAGCTACATTTTCGTGTCATGTGACGTCATCCAAAAGTACTTCGCC
GGTGGAAGGCGAAGACGACGAAAGACGACCCCGGTTAGTTCGGCACACGT
GACTTTGAAGAGGATGAGTCAACAACAGGCAGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11629:3774..4258+

>mRNA_L-elsbetiae_contig11629.1412.1 ID=mRNA_L-elsbetiae_contig11629.1412.1|Name=mRNA_L-elsbetiae_contig11629.1412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig11629:3774..4258+ (Laminarionema elsbetiae ELsaHSoW15)
CGATCTTCAGCACCTGTGTGTGGGCGCAGAGGGGCGCGGGAGGCCGGCGA
GAGGTTTGGGGGGGGGAGGGTAAGCGATAGAGAGGAGCGCGTGCTTACCA
CGGGTTCCCCGCATTGTAGGAATTTGGCATGTAGCAAGCAAGCGGGTACG
TGGCGTGTCACATATGTGAACGCAGTGGCTGCTTCGCGAAAAGAGGCAGC
CCACGAATACAGCCAACAGCCCTCACGCCGATCGATCTTGGATGTGTCAG
GAAACAACAGTAGTGCTGGCATTCACACATGGGTTGGCTACAAAATAACC
CTTGGTGATATTGGTGCTGCGACCAGCCGACTGCTTGCCGTGCTGCCTAT
TCAATAGCGATCTTCAGCACCTGTGTGTGGGCGCAGAGGGGCGCGGGAGG
CCGGCGAGAGGTTTGGGGGGGGGAGGGTAAGCGATAGAGAGGAGCGCGTG
CTTACCACGGGTTCCCCGCATTGTAGGAATTTGGCATGTAGCAAGCAAGC
GGGTACGTGGCGTGTCACATATGTGAACGCAGTGGCTGCTTCGCGAAAAG
AGGCAGCCCACGAATACAGCCAACAGCCCTCACGCCGATCGATCTTGGAT
GTGTCAGGAAACAACAGTAGTGCTGGCATTCACACATGGGTTGGCTACAA
AATAACCCTTGGTGATATTGGTGCTGCGACCAGCCGACTGCTTGCCGTGC
TGCCTATTCAATAG
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