mRNA_L-elsbetiae_contig11629.1411.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11629.1411.1
Unique NamemRNA_L-elsbetiae_contig11629.1411.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11629.1411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11629contigL-elsbetiae_contig11629:2496..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.1749527-UTR-L-elsbetiae_contig11629:2495..26771622815366.1749527-UTR-L-elsbetiae_contig11629:2495..2677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11629 2496..2677 +
1691682863.3505697-UTR-L-elsbetiae_contig11629:2495..26771691682863.3505697-UTR-L-elsbetiae_contig11629:2495..2677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11629 2496..2677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.1866274-CDS-L-elsbetiae_contig11629:2677..30311622815366.1866274-CDS-L-elsbetiae_contig11629:2677..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11629 2678..3031 +
1691682863.3596776-CDS-L-elsbetiae_contig11629:2677..30311691682863.3596776-CDS-L-elsbetiae_contig11629:2677..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11629 2678..3031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11629.1411.1prot_L-elsbetiae_contig11629.1411.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11629 2678..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11629.1411.1

>prot_L-elsbetiae_contig11629.1411.1 ID=prot_L-elsbetiae_contig11629.1411.1|Name=mRNA_L-elsbetiae_contig11629.1411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MVVALGLGVPRTKSKASPGMAWFLQSINTSGTRLFSQMNPRFSRVPVHFY
LSTCEWATMGVKVAPVVLRNARTLDWNRPLNLNWSSFVSLTRRAFTPHAW
SPSPTRIFYSNWNSHQGQ
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mRNA from alignment at L-elsbetiae_contig11629:2496..3031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11629.1411.1 ID=mRNA_L-elsbetiae_contig11629.1411.1|Name=mRNA_L-elsbetiae_contig11629.1411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=536bp|location=Sequence derived from alignment at L-elsbetiae_contig11629:2496..3031+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCGTTCGGTTGCGTCCGGGTTTCCGACGAGCATAGGCTTTGGCTTTTG
AGTCTCGCTTTCCCCGCCCGGTTACGTAGTTGCGAAGGTACCGGAGGCTC
GGCGTGAACTTGTACATCGGCCTTGCAAACAGTGAGCGCTTTCGGATATC
TCGCCACCTGTGGATATCAGCTACTAATACATATGGTAGTGGCTCTTGGT
TTGGGTGTCCCGCGAACGAAAAGCAAGGCATCTCCCGGTATGGCTTGGTT
TCTTCAGAGTATCAACACAAGTGGGACGCGTTTGTTTTCACAGATGAACC
CGAGATTTTCACGAGTGCCGGTTCACTTCTATTTATCAACCTGTGAGTGG
GCGACCATGGGCGTAAAGGTCGCACCAGTAGTGCTGCGCAACGCACGTAC
ACTTGATTGGAATCGACCTCTCAACTTGAACTGGTCGTCATTTGTTTCCT
TGACACGGAGAGCGTTCACACCTCACGCATGGAGTCCCTCCCCAACGCGC
ATATTTTACTCAAACTGGAACTCCCACCAAGGTCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11629:2496..3031+

>mRNA_L-elsbetiae_contig11629.1411.1 ID=mRNA_L-elsbetiae_contig11629.1411.1|Name=mRNA_L-elsbetiae_contig11629.1411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig11629:2496..3031+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGTGGCTCTTGGTTTGGGTGTCCCGCGAACGAAAAGCAAGGCATC
TCCCGGTATGGCTTGGTTTCTTCAGAGTATCAACACAAGTGGGACGCGTT
TGTTTTCACAGATGAACCCGAGATTTTCACGAGTGCCGGTTCACTTCTAT
TTATCAACCTGTGAGTGGGCGACCATGGGCGTAAAGGTCGCACCAGTAGT
GCTGCGCAACGCACGTACACTTGATTGGAATCGACCTCTCAACTTGAACT
GGTCGTCATTTGTTTCCTTGACACGGAGAGCGTTCACACCTCACGCATGG
AGTCCCTCCCCAACGCGCATATTTTACTCAAACTGGAACTCCCACCAAGG
TCAAATGGTAGTGGCTCTTGGTTTGGGTGTCCCGCGAACGAAAAGCAAGG
CATCTCCCGGTATGGCTTGGTTTCTTCAGAGTATCAACACAAGTGGGACG
CGTTTGTTTTCACAGATGAACCCGAGATTTTCACGAGTGCCGGTTCACTT
CTATTTATCAACCTGTGAGTGGGCGACCATGGGCGTAAAGGTCGCACCAG
TAGTGCTGCGCAACGCACGTACACTTGATTGGAATCGACCTCTCAACTTG
AACTGGTCGTCATTTGTTTCCTTGACACGGAGAGCGTTCACACCTCACGC
ATGGAGTCCCTCCCCAACGCGCATATTTTACTCAAACTGGAACTCCCACC
AAGGTCAA
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