mRNA_L-elsbetiae_contig11625.1409.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11625.1409.1
Unique NamemRNA_L-elsbetiae_contig11625.1409.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11625.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11625contigL-elsbetiae_contig11625:4..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size386
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.1161394-CDS-L-elsbetiae_contig11625:3..3211622815366.1161394-CDS-L-elsbetiae_contig11625:3..321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11625 4..321 +
1691682863.3226376-CDS-L-elsbetiae_contig11625:3..3211691682863.3226376-CDS-L-elsbetiae_contig11625:3..321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11625 4..321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.1309266-UTR-L-elsbetiae_contig11625:321..3871622815366.1309266-UTR-L-elsbetiae_contig11625:321..387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11625 322..387 +
1691682863.3368986-UTR-L-elsbetiae_contig11625:321..3871691682863.3368986-UTR-L-elsbetiae_contig11625:321..387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11625 322..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11625.1409.1prot_L-elsbetiae_contig11625.1409.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11625 4..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11625.1409.1

>prot_L-elsbetiae_contig11625.1409.1 ID=prot_L-elsbetiae_contig11625.1409.1|Name=mRNA_L-elsbetiae_contig11625.1409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
TYITAAPAGTRGAFICSVNWHDKVRNSTLTTTLTPQGSSHKRVKATCCCY
PGHAAAPTHQISRPSQHLPLFLPVRGELLRAELECCAFGRARAVSFSYPH
RWKQI*
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mRNA from alignment at L-elsbetiae_contig11625:4..387+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11625.1409.1 ID=mRNA_L-elsbetiae_contig11625.1409.1|Name=mRNA_L-elsbetiae_contig11625.1409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig11625:4..387+ (Laminarionema elsbetiae ELsaHSoW15)
ACATACATCACCGCAGCACCCGCAGGAACGCGCGGAGCTTTTATTTGCAG
CGTTAACTGGCACGACAAGGTTCGCAACTCGACCCTCACTACTACCCTCA
CTCCACAGGGCTCTAGTCACAAAAGGGTTAAAGCTACCTGCTGCTGCTAC
CCAGGACATGCGGCGGCCCCTACACACCAAATCAGTAGGCCCTCCCAGCA
TCTTCCGCTGTTCTTGCCTGTGAGGGGCGAGCTACTTAGAGCCGAACTGG
AATGTTGTGCTTTCGGAAGGGCCCGTGCTGTCAGTTTCAGCTACCCACAT
AGATGGAAACAAATATAGACCCCAAGAGATTTCACAACATGCGACCCATT
AGATCCTAGAAGCCTATACGGTAACGAAAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11625:4..387+

>mRNA_L-elsbetiae_contig11625.1409.1 ID=mRNA_L-elsbetiae_contig11625.1409.1|Name=mRNA_L-elsbetiae_contig11625.1409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig11625:4..387+ (Laminarionema elsbetiae ELsaHSoW15)
ACATACATCACCGCAGCACCCGCAGGAACGCGCGGAGCTTTTATTTGCAG
CGTTAACTGGCACGACAAGGTTCGCAACTCGACCCTCACTACTACCCTCA
CTCCACAGGGCTCTAGTCACAAAAGGGTTAAAGCTACCTGCTGCTGCTAC
CCAGGACATGCGGCGGCCCCTACACACCAAATCAGTAGGCCCTCCCAGCA
TCTTCCGCTGTTCTTGCCTGTGAGGGGCGAGCTACTTAGAGCCGAACTGG
AATGTTGTGCTTTCGGAAGGGCCCGTGCTGTCAGTTTCAGCTACCCACAT
AGATGGAAACAAATATAGACATACATCACCGCAGCACCCGCAGGAACGCG
CGGAGCTTTTATTTGCAGCGTTAACTGGCACGACAAGGTTCGCAACTCGA
CCCTCACTACTACCCTCACTCCACAGGGCTCTAGTCACAAAAGGGTTAAA
GCTACCTGCTGCTGCTACCCAGGACATGCGGCGGCCCCTACACACCAAAT
CAGTAGGCCCTCCCAGCATCTTCCGCTGTTCTTGCCTGTGAGGGGCGAGC
TACTTAGAGCCGAACTGGAATGTTGTGCTTTCGGAAGGGCCCGTGCTGTC
AGTTTCAGCTACCCACATAGATGGAAACAAATATAG
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