mRNA_L-elsbetiae_contig1162.1406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1162.1406.1
Unique NamemRNA_L-elsbetiae_contig1162.1406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1162.1406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1162contigL-elsbetiae_contig1162:22780..23659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size449
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.6751592-CDS-L-elsbetiae_contig1162:22779..228361622815365.6751592-CDS-L-elsbetiae_contig1162:22779..22836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1162 22780..22836 -
1691682863.0277953-CDS-L-elsbetiae_contig1162:22779..228361691682863.0277953-CDS-L-elsbetiae_contig1162:22779..22836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1162 22780..22836 -
1622815365.6931117-CDS-L-elsbetiae_contig1162:23269..236591622815365.6931117-CDS-L-elsbetiae_contig1162:23269..23659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1162 23270..23659 -
1691682863.0410838-CDS-L-elsbetiae_contig1162:23269..236591691682863.0410838-CDS-L-elsbetiae_contig1162:23269..23659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1162 23270..23659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1162.1406.1prot_L-elsbetiae_contig1162.1406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1162 22780..23659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1162.1406.1

>prot_L-elsbetiae_contig1162.1406.1 ID=prot_L-elsbetiae_contig1162.1406.1|Name=mRNA_L-elsbetiae_contig1162.1406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
GDGSGASDGTAAPVAAAAAAAAAVDPYATLPSPTPTSTQPSNSPQYAHSP
PAPAPPGWGVSLPAASAGQQGPAAPGSVGGGPAPAVSIAPPTAAGLPGFR
YPAGEADAAVTAAQQQQQQTSAGMSSPFLQAHTGSSADPGGAWGLSLQA
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mRNA from alignment at L-elsbetiae_contig1162:22780..23659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1162.1406.1 ID=mRNA_L-elsbetiae_contig1162.1406.1|Name=mRNA_L-elsbetiae_contig1162.1406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=880bp|location=Sequence derived from alignment at L-elsbetiae_contig1162:22780..23659- (Laminarionema elsbetiae ELsaHSoW15)
GGCGATGGCAGCGGTGCCAGCGACGGTACCGCTGCTCCGGTTGCTGCTGC
TGCTGCTGCTGCTGCTGCCGTCGACCCTTACGCCACGCTGCCATCGCCGA
CGCCAACCAGCACGCAACCCTCGAATAGCCCCCAGTACGCCCACTCGCCC
CCCGCCCCTGCTCCGCCCGGATGGGGGGTTTCCCTGCCTGCCGCGTCGGC
GGGGCAGCAGGGGCCGGCAGCTCCCGGTTCGGTCGGGGGTGGGCCCGCCC
CTGCGGTGTCGATAGCACCCCCGACGGCGGCTGGTCTGCCCGGGTTTCGG
TATCCCGCGGGCGAAGCGGATGCGGCGGTGACGGCGGCACAGCAACAGCA
ACAGCAGACGTCGGCCGGAATGTCGAGCCCTTTCCTGCAGGTGGGCACGG
CGGTCTCAGAACGCGCATCGCATCGTGGCGTGGCGGACAGAGTCGCGCGC
ACAAAGATTGTCGTAAAAGTAAAAGAAGCAGCAGTAAATGCTTTTACTTT
GTTGTTTTCATGGAGCATGAAATCATGCCTTCCTTGCCTCTCCCATTGTT
TTTTTTGTGCGTTGCGTTTTTATGTATGGATGTAGTGTTGCTGCAGTTTG
TTTTTCACCCTCCGCTCTGACCAACGCCGGTAGTCGCCGCTTTCTGTGCT
TGTTGCTCTAGCCGGCGTTTGCTCTTTTGTTGTTGTTGTTGTGTACAATG
GAACAGCCAACCGTTCGTTCCCTCCATGCTAGTTTTATCGGCGTGCCCTG
ATTACCAAACGCGATCGCGCTGTGCTGTCCCTTTCCCTTTCCATCACTGC
CACCACCGCTACTTTACCATCAGGCGCACACCGGCAGCAGTGCGGATCCA
GGAGGCGCCTGGGGTCTATCCCTTCAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1162:22780..23659-

>mRNA_L-elsbetiae_contig1162.1406.1 ID=mRNA_L-elsbetiae_contig1162.1406.1|Name=mRNA_L-elsbetiae_contig1162.1406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig1162:22780..23659- (Laminarionema elsbetiae ELsaHSoW15)
GGCGATGGCAGCGGTGCCAGCGACGGTACCGCTGCTCCGGTTGCTGCTGC
TGCTGCTGCTGCTGCTGCCGTCGACCCTTACGCCACGCTGCCATCGCCGA
CGCCAACCAGCACGCAACCCTCGAATAGCCCCCAGTACGCCCACTCGCCC
CCCGCCCCTGCTCCGCCCGGATGGGGGGTTTCCCTGCCTGCCGCGTCGGC
GGGGCAGCAGGGGCCGGCAGCTCCCGGTTCGGTCGGGGGTGGGCCCGCCC
CTGCGGTGTCGATAGCACCCCCGACGGCGGCTGGTCTGCCCGGGTTTCGG
TATCCCGCGGGCGAAGCGGATGCGGCGGTGACGGCGGCACAGCAACAGCA
ACAGCAGACGTCGGCCGGAATGTCGAGCCCTTTCCTGCAGGGCGATGGCA
GCGGTGCCAGCGACGGTACCGCTGCTCCGGTTGCTGCTGCTGCTGCTGCT
GCTGCTGCCGTCGACCCTTACGCCACGCTGCCATCGCCGACGCCAACCAG
CACGCAACCCTCGAATAGCCCCCAGTACGCCCACTCGCCCCCCGCCCCTG
CTCCGCCCGGATGGGGGGTTTCCCTGCCTGCCGCGTCGGCGGGGCAGCAG
GGGCCGGCAGCTCCCGGTTCGGTCGGGGGTGGGCCCGCCCCTGCGGTGTC
GATAGCACCCCCGACGGCGGCTGGTCTGCCCGGGTTTCGGTATCCCGCGG
GCGAAGCGGATGCGGCGGTGACGGCGGCACAGCAACAGCAACAGCAGACG
TCGGCCGGAATGTCGAGCCCTTTCCTGCAGGCGCACACCGGCAGCAGTGC
GGATCCAGGAGGCGCCTGGGGTCTATCCCTTCAGGCCGCGCACACCGGCA
GCAGTGCGGATCCAGGAGGCGCCTGGGGTCTATCCCTTCAGGCC
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