mRNA_L-elsbetiae_contig11617.1403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11617.1403.1
Unique NamemRNA_L-elsbetiae_contig11617.1403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11617.1403.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.520e-65
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    4 RVAYAGSTSKKIYTVDTRDPMSVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRLDEEGLLLAANCFDNTLRV 324
            RVAYAGSTSKKIYTVDTRDPM VVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGR DEEGLLLAANCFDNTLRV
Sbjct:  272 RVAYAGSTSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRV 378
[Close]
BLAST of mRNA_L-elsbetiae_contig11617.1403.1 vs. uniprot
Match: A0A5D6XXH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.760e-16
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   13 YAGSTSKKIYTVDTRDPMSVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYS-LEDPIH--ISHIQASPP-DAGRLDEEGLLLAANCFDNTLRV 324
            + G++   I+ VD+R    VV  W   A VNSL+V  DG  +V+ D+ G + TWD R    +D  S L DP    ISHI ASPP D  R DE+G  LAAN +DN LRV
Sbjct:  196 FFGTSKSCIHQVDSR--ADVVRSWQNDAMVNSLYVSPDGQFIVTGDSKGMLKTWDVRMDACIDDISKLNDPGRHAISHIHASPPVDGRRGDEDGRFLAANSYDNLLRV 301
[Close]
BLAST of mRNA_L-elsbetiae_contig11617.1403.1 vs. uniprot
Match: A0A2D4BDQ6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ6_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 2.560e-15
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   13 YAGSTSKKIYTVDTRDPMSVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLE-DPIH--ISHIQASPPDAGRL-DEEGLLLAANCFDNTLRV 324
            + G++   I+ +D+R    V  KW   A VNSL+V  DG  V++ D+ G I TWD R    ++  S + DP +  ISHI ASPP  GR  DE+G  LAAN +DN LRV
Sbjct:  211 FLGTSKNAIHMMDSR--AEVCRKWQNNAMVNSLYVSPDGQFVITGDSRGMIKTWDVRMESCIEDISRQNDPGNHAISHIHASPPVDGRSGDEDGRFLAANSYDNILRV 316
[Close]
BLAST of mRNA_L-elsbetiae_contig11617.1403.1 vs. uniprot
Match: A0A8K1CHV1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHV1_PYTOL)

HSP 1 Score: 77.8 bits (190), Expect = 1.690e-14
Identity = 50/111 (45.05%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   13 YAGSTSKKIYTVDTRDPM---SVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLE-DPIH--ISHIQASPPDAGRL-DEEGLLLAANCFDNTLRV 324
            + G++   I+ VD+R  +   S    W   A VNSL+V  DG  VV+ D+ G I TWD R    ++  S E DP    ISHI ASPP  GR  DE+G  LAAN +DN LRV
Sbjct:  216 FMGTSKSAIHMVDSRADVCRWSDCVTWQNDAMVNSLYVSPDGQFVVTGDSKGMIKTWDVRMESCIEDISRENDPGRHAISHIHASPPVDGRGGDEDGRFLAANSYDNILRV 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11617.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE2.520e-6598.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XXH4_9STRA2.760e-1646.30Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BDQ6_PYTIN2.560e-1544.44Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A8K1CHV1_PYTOL1.690e-1445.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11617contigL-elsbetiae_contig11617:1512..3583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog112098.XP_008603822.1
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons3
Model size325
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11617.1403.1prot_L-elsbetiae_contig11617.1403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11617 1512..3582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.4696748-CDS-L-elsbetiae_contig11617:1511..16461622815365.4696748-CDS-L-elsbetiae_contig11617:1511..1646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 1512..1646 +
1691682862.933451-CDS-L-elsbetiae_contig11617:1511..16461691682862.933451-CDS-L-elsbetiae_contig11617:1511..1646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 1512..1646 +
1622815365.489336-CDS-L-elsbetiae_contig11617:2409..25171622815365.489336-CDS-L-elsbetiae_contig11617:2409..2517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 2410..2517 +
1691682862.9443963-CDS-L-elsbetiae_contig11617:2409..25171691682862.9443963-CDS-L-elsbetiae_contig11617:2409..2517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 2410..2517 +
1622815365.5086796-CDS-L-elsbetiae_contig11617:3501..35821622815365.5086796-CDS-L-elsbetiae_contig11617:3501..3582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 3502..3582 +
1691682862.9524152-CDS-L-elsbetiae_contig11617:3501..35821691682862.9524152-CDS-L-elsbetiae_contig11617:3501..3582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 3502..3582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11617.1403.1

>prot_L-elsbetiae_contig11617.1403.1 ID=prot_L-elsbetiae_contig11617.1403.1|Name=mRNA_L-elsbetiae_contig11617.1403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GRVAYAGSTSKKIYTVDTRDPMSVVAKWNCGAFVNSLHVYSDGSKVVSAD
ASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRLDEEGLLLAAN
CFDNTLRV
back to top

mRNA from alignment at L-elsbetiae_contig11617:1512..3583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11617.1403.1 ID=mRNA_L-elsbetiae_contig11617.1403.1|Name=mRNA_L-elsbetiae_contig11617.1403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2072bp|location=Sequence derived from alignment at L-elsbetiae_contig11617:1512..3583+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGGGTGGCGTATGCGGGGTCGACGAGCAAGAAGATTTACACGGTTGA
CACACGGGATCCGATGTCGGTCGTGGCGAAGTGGAACTGCGGGGCGTTCG
TCAACTCTCTGCACGTTTATTCGGACGGGAGCAAGGTAAAAGTAGGGCAA
GCTAAGACAACATAAAGATGCCTACAACAGTAGTCCCTCTGGAACGACTT
TTTCTTCGCAGACTGGACGTAGACTGCTGACATTTGTATACATTCATTAC
AGATAGGGCAAGACACGGTTGGGTCAGACGAGGCAGGACTAGACACGGTA
AAGCAAGGCAAGGTGAGGTTGGGTAGGGTGGGCAGGTGGCGTGGCGTGTC
GGAGGTCTGATTGAGAACAGACGGGGCGGGGGGGTTGAGGATGCGTGCGG
CATTAGGGGGGACGGGGAGTGGCCAAAAGGGTGTAGAGGGTGTAGGTAGA
GCTGTTCGATGCTACATCCAAGTGCCGTTTGCATAGGATGATGTGCTTCC
AAAGGACCGGCCTGGAGAGGTCGTTGGCGGTGGCGCCCCGCTGTCTTTCA
CCTCCTTTCATCCTTTGGTGAATGCTGTTGTCGTTGCACCCCTGCGCGCG
TGCGCTCGGTGGCGTTGCACGGTCAAAACGGTTTCATGTGGGATGGGCCG
TAGCGGGTGCTGTATCTGCTGCGTGGACGGTTGCTGCTGCTGCTGCTGCT
GCTGTTGATGATGGCCCTGTTATTTTTGCTTCCAGCAAATGAACCTCACA
TCCCGTGCCGATTCCAAAACCAGTGGGACATACTTAATAAACAAGTTTAA
CTAGTCGCGAGCTTATGATACGGTCAAACGGTGCCAAAGCGCCAATTGAA
ATTTGATTCAATTGCGGCGCAACTCAAATGCGGCGCGATTCGATTCAGGT
GGTCTCGGCCGACGCGAGTGGCAAGATACTGACGTGGGATACCCGCACTG
GGGGCGTCGTGGACTCGTACAGCCTGGAAGATCCCATACACATCTCACAC
ATTCAGGTGCGGGTCCCCGCGACGACGGGGGGTCTGGCGTCCGTGCACAC
ACACGGGGGGCACAGCCGAAACATGCCCTCGGTGTATCGGACTCGGAAGT
CATACACTTCGCTCGAGAGTAACCCCCTGTTTGCGGGAAGGAAGTGGGAA
GCTGGGACGCTGCGTGCGCTGCATGATCAACATTGCGACACCCCACTTGC
AAGCACCGAGGGCTAGTGAGGGGGGGGGGGGGGGGGGGTGTGCGTGGCGT
GGTGCGACAGGGAGGAAGGAGAAGGTAGGAAAACCCCGGGGTTTGTTGGG
CTCGATTNNNNNNNNNNGGGAGGGGGCACGCGTTCGCCGCTGATTGCTAT
AAGTGCACGACGCTCCTGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGTCGCTATCAGGCTGGCAGTCGCTGAGAGAGAGGCAGTGACT
GGATCCCCAGCGCTGTCGACAGTACCAATGCCCTCGGTGTACACCCGTCC
CCGATCCCCACATGGCCAAGCTTGGCTCTAATTGCTCTCTCTCTCTCCCT
CCCTCTCTCTCTCTGTTCTCTCTCTCTGCCTTCCCTCGCCCTTCTCGCCT
GCCCCCTTTTTGTTTCCGCCTCCTCTCTGGGAGGGTTTCCTGTGTTTTGT
TGGCTTGTCGCCCGTATGTTCTGGCGTCTTGTCTCTTTTTCTTTTTTCTC
TCTTTTTCTTCTCCACCACGACACAACACAACACAACAACGTCGACAACA
ACGTCGACAACAACAACGACAAACATAACAAAACATCGCCGTATGTTCTG
GCGTCTGTCTCTTTATTTTCTCTCTCTCTTTTTCTTCTTCACGATGACAC
ACAAACACAACAACGACGACAACAACAACGACAAAAACATACAAAAAAAA
ATACAACGACGACGACGACAACGACGACGACAACAACATCAACGACGATC
TCAACAACAACGACGACAATAACGACGACAACGACAAAAGGCCTCGCCCC
CAGACGCGGGCCGGCTGGACGAGGAGGGTCTCCTGCTCGCCGCCAACTGC
TTCGACAACACCCTCCGGGTAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11617:1512..3583+

>mRNA_L-elsbetiae_contig11617.1403.1 ID=mRNA_L-elsbetiae_contig11617.1403.1|Name=mRNA_L-elsbetiae_contig11617.1403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig11617:1512..3583+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGGGTGGCGTATGCGGGGTCGACGAGCAAGAAGATTTACACGGTTGA
CACACGGGATCCGATGTCGGTCGTGGCGAAGTGGAACTGCGGGGCGTTCG
TCAACTCTCTGCACGTTTATTCGGACGGGAGCAAGGGGAGGGTGGCGTAT
GCGGGGTCGACGAGCAAGAAGATTTACACGGTTGACACACGGGATCCGAT
GTCGGTCGTGGCGAAGTGGAACTGCGGGGCGTTCGTCAACTCTCTGCACG
TTTATTCGGACGGGAGCAAGGTGGTCTCGGCCGACGCGAGTGGCAAGATA
CTGACGTGGGATACCCGCACTGGGGGCGTCGTGGACTCGTACAGCCTGGA
AGATCCCATACACATCTCACACATTCAGGTGGTCTCGGCCGACGCGAGTG
GCAAGATACTGACGTGGGATACCCGCACTGGGGGCGTCGTGGACTCGTAC
AGCCTGGAAGATCCCATACACATCTCACACATTCAGGCCTCGCCCCCAGA
CGCGGGCCGGCTGGACGAGGAGGGTCTCCTGCTCGCCGCCAACTGCTTCG
ACAACACCCTCCGGGTAGCCTCGCCCCCAGACGCGGGCCGGCTGGACGAG
GAGGGTCTCCTGCTCGCCGCCAACTGCTTCGACAACACCCTCCGGGTA
back to top