mRNA_L-elsbetiae_contig11617.1402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11617.1402.1
Unique NamemRNA_L-elsbetiae_contig11617.1402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.290e-56
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 279
            HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYP+SQVACLEGHRQLISD+CWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV
Sbjct:  138 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 230          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.480e-26
Identity = 53/93 (56.99%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 279
            HTAAVY   FSP  +LVAS GFDRT+RLWEG YP SQVACL  HRQL+SD                      DTETGQRV N+L LEG++QCV
Sbjct:   80 HTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSDXXXXXXXXXXXXXXXXXXXXXXDTETGQRVNNVLRLEGMLQCV 172          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-16
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQ--VACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 279
            H  AVY  KFSP   L+AS   D  + LW+    F+Q  +A L  H QL+ D+ W+ D RSLLSAS+D TV  WDT+ GQ + N + + GLVQ V
Sbjct:  118 HGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYDHTVNLWDTDKGQLL-NSIGVNGLVQTV 211          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 82.4 bits (202), Expect = 2.290e-16
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   10 AVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQ--VACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 279
            AVY  KFSP   L+AS   D  + LW+    F+Q  +A L  H QLI DI W+ D RSLLSAS+D TV  WDT+ GQ V N + + GLVQ V
Sbjct:  134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYDHTVNLWDTDKGQLV-NSVGVNGLVQTV 224          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL)

HSP 1 Score: 64.3 bits (155), Expect = 5.120e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   13 VYVAKFSPRDSLVASAGFDRTLRLWEGAY-PFSQVACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRVG 243
            +Y A FSP  SL+A  G+D  + LW GA      +  L GH   +S + +APDGR+LLSAS D TV  W   TG+  G
Sbjct:    2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGDATVRVWCPATGESAG 79          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A1A0HJF3_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HJF3_9ASCO)

HSP 1 Score: 66.2 bits (160), Expect = 8.750e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVA----CLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRV 240
            HT AV+  +FS     +ASAG DRT+RLW         A     +EGH++ I+ + W    + +LSAS D TV+ WD ETGQR+
Sbjct:   27 HTGAVFSIEFSADGHNIASAGMDRTIRLWNLPTTADNEAPNYGVIEGHKKAITSLSWILSSK-ILSASADSTVSVWDAETGQRL 109          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A9V9T1_MONBE (Lactoylglutathione lyase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9T1_MONBE)

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-10
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRV 240
            H  AVY   FSP   ++A+AGFDR + +W        +  L+GH   +  + WA     L S S D+TVA WD  TG+RV
Sbjct:   77 HAEAVYAGTFSPSGHMLATAGFDRNVYVWNTFGNCENIMSLQGHTGAVLGLHWAKLENRLFSCSSDKTVAVWDGNTGERV 156          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A512UMM7_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UMM7_9ASCO)

HSP 1 Score: 63.9 bits (154), Expect = 5.980e-10
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVA----CLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRV 240
            H+ AV+  KFSP    +ASAG DRT+RLW      ++ +     +EGH+  ++ + W    + +LS S D TV+ WD ETGQR+
Sbjct:   27 HSGAVFSVKFSPDGQHIASAGTDRTIRLWNLPTRANEESPNYGVIEGHKGGLTALSWLSQSK-ILSTSADSTVSIWDAETGQRL 109          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A139AT89_GONPJ (WD40 repeat-like protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AT89_GONPJ)

HSP 1 Score: 62.8 bits (151), Expect = 1.930e-9
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGA-----YPFSQVACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV 279
            H+ AV+  KFSP   L+A+AGFD  L LW+ A      P    +   G +  ++D+ W  +  S+LS S+D+    WD E GQ VG   S +G V  V
Sbjct:  287 HSGAVFAVKFSPTGRLLATAGFDARLCLWDVADSPDREPREWWSATRG-KSNVADVAWNAESTSVLSGSYDRMCRLWDVERGQSVGEW-SADGFVGSV 382          
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Match: A0A4P6XGR8_9ASCO (Prp8 binding protein n=1 Tax=Metschnikowia aff. pulcherrima TaxID=2163413 RepID=A0A4P6XGR8_9ASCO)

HSP 1 Score: 62.4 bits (150), Expect = 2.200e-9
Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 1
Query:    1 HTAAVYVAKFSPRDSLVASAGFDRTLRLW----EGAYPFSQVACLEGHRQLISDICWAPDGRSLLSASFDQTVAKWDTETGQRV 240
            H  A    KFSP    +ASAG DRT+RLW    +          +EGH+  ++ + W    + + + S D TVA WD ETGQRV
Sbjct:   36 HEGAALCVKFSPDGQNIASAGLDRTIRLWNLPTDAKDEVPNYGVIEGHKGAVTCLDWLAQSK-IFTGSADSTVAFWDAETGQRV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11617.1402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE3.290e-5697.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR1_9STRA1.480e-2656.99WD40-repeat-containing domain protein (Fragment) n... [more]
A0A1V9Z1V2_9STRA1.650e-1647.37Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QW05_SAPDV2.290e-1651.09Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1NRB8_9EUGL5.120e-1144.87Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A1A0HJF3_9ASCO8.750e-1142.86Uncharacterized protein n=1 Tax=Metschnikowia bicu... [more]
A9V9T1_MONBE1.600e-1040.00Lactoylglutathione lyase n=1 Tax=Monosiga brevicol... [more]
A0A512UMM7_9ASCO5.980e-1040.48Uncharacterized protein n=1 Tax=Metschnikowia sp. ... [more]
A0A139AT89_GONPJ1.930e-937.76WD40 repeat-like protein n=1 Tax=Gonapodya prolife... [more]
A0A4P6XGR8_9ASCO2.200e-939.29Prp8 binding protein n=1 Tax=Metschnikowia aff. pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11617contigL-elsbetiae_contig11617:589..1391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog272952.HpaP812042
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3Q7SN@4776,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.4151375-CDS-L-elsbetiae_contig11617:588..7891622815365.4151375-CDS-L-elsbetiae_contig11617:588..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 589..789 +
1691682862.9077928-CDS-L-elsbetiae_contig11617:588..7891691682862.9077928-CDS-L-elsbetiae_contig11617:588..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 589..789 +
1622815365.4267535-CDS-L-elsbetiae_contig11617:1313..13911622815365.4267535-CDS-L-elsbetiae_contig11617:1313..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 1314..1391 +
1691682862.922382-CDS-L-elsbetiae_contig11617:1313..13911691682862.922382-CDS-L-elsbetiae_contig11617:1313..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11617 1314..1391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11617.1402.1prot_L-elsbetiae_contig11617.1402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11617 589..1391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11617.1402.1

>prot_L-elsbetiae_contig11617.1402.1 ID=prot_L-elsbetiae_contig11617.1402.1|Name=mRNA_L-elsbetiae_contig11617.1402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISD
ICWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCV
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mRNA from alignment at L-elsbetiae_contig11617:589..1391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11617.1402.1 ID=mRNA_L-elsbetiae_contig11617.1402.1|Name=mRNA_L-elsbetiae_contig11617.1402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=803bp|location=Sequence derived from alignment at L-elsbetiae_contig11617:589..1391+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGGCGGCCGTGTACGTGGCCAAGTTCTCCCCCCGCGACAGCCTGGT GGCCTCCGCGGGGTTCGACCGCACCCTGCGGCTGTGGGAGGGCGCGTACC CCTTCAGCCAGGTGGCGTGCCTGGAGGGGCACCGGCAGCTGATCAGTGAC ATCTGCTGGGCCCCCGACGGGAGGTCTTTGCTGAGCGCCTCCTTCGACCA GGTGTCTAGACGAGAGTTCTTGCCTGGCTGGCTGCTCGCGCGTGTGTGTG CAGAAGAGAGAGAGAAGGTGTTTACTGTATAAGTGTTATGTATACCCCGA AAGTATGTGTGTGCGTGCGGAGAGGCTTCTGCTCGGAAGGAGCGCTGTTA TTGTTTTTGAGTCTGCTCCGCGCCGGCGCTGTGGGCCCCTTGAGGCCGTT GCGGCTGCTTTTACGCGAGCACCGCCCGTCCGTCTGTCGGTGGCTTTTGA AACCACATTTTCTTATTGTTTTTTTCGTCGAGAGGACGAACGGCAGGCAA ATATACCGCTCGCTCACCGCTGTGATCTTTCGATGCCTTGTGGCCGTGCG CAACCGTAAATGTACCCGCGTGTACCACGGCCAGATCGCACCTAACCGTA ATAAATGTACCCGCATGTATCACACCAGACCGCACGTAACCGTAGTAAAT GCACCCGTATGTTACCACACCAGACCGTGCGTGCGTAACCGTCGTACATA AATGCACCCGTATGTGCCGCACCAGACCGTCGCGAAGTGGGACACTGAGA CGGGCCAAAGGGTGGGCAACATGCTGTCGCTCGAGGGGCTTGTCCAGTGC GTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11617:589..1391+

>mRNA_L-elsbetiae_contig11617.1402.1 ID=mRNA_L-elsbetiae_contig11617.1402.1|Name=mRNA_L-elsbetiae_contig11617.1402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig11617:589..1391+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGGCGGCCGTGTACGTGGCCAAGTTCTCCCCCCGCGACAGCCTGGT
GGCCTCCGCGGGGTTCGACCGCACCCTGCGGCTGTGGGAGGGCGCGTACC
CCTTCAGCCAGGTGGCGTGCCTGGAGGGGCACCGGCAGCTGATCAGTGAC
ATCTGCTGGGCCCCCGACGGGAGGTCTTTGCTGAGCGCCTCCTTCGACCA
GCACACGGCGGCCGTGTACGTGGCCAAGTTCTCCCCCCGCGACAGCCTGG
TGGCCTCCGCGGGGTTCGACCGCACCCTGCGGCTGTGGGAGGGCGCGTAC
CCCTTCAGCCAGGTGGCGTGCCTGGAGGGGCACCGGCAGCTGATCAGTGA
CATCTGCTGGGCCCCCGACGGGAGGTCTTTGCTGAGCGCCTCCTTCGACC
AGACCGTCGCGAAGTGGGACACTGAGACGGGCCAAAGGGTGGGCAACATG
CTGTCGCTCGAGGGGCTTGTCCAGTGCGTCACCGTCGCGAAGTGGGACAC
TGAGACGGGCCAAAGGGTGGGCAACATGCTGTCGCTCGAGGGGCTTGTCC
AGTGCGTC
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