mRNA_L-elsbetiae_contig11615.1401.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11615.1401.1
Unique NamemRNA_L-elsbetiae_contig11615.1401.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11615.1401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11615contigL-elsbetiae_contig11615:2846..3909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size563
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.36487-CDS-L-elsbetiae_contig11615:2845..30261622815365.36487-CDS-L-elsbetiae_contig11615:2845..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11615 2846..3026 +
1691682862.8835957-CDS-L-elsbetiae_contig11615:2845..30261691682862.8835957-CDS-L-elsbetiae_contig11615:2845..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11615 2846..3026 +
1622815365.3765757-CDS-L-elsbetiae_contig11615:3527..39071622815365.3765757-CDS-L-elsbetiae_contig11615:3527..3907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11615 3528..3907 +
1691682862.8940623-CDS-L-elsbetiae_contig11615:3527..39071691682862.8940623-CDS-L-elsbetiae_contig11615:3527..3907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11615 3528..3907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11615.1401.1prot_L-elsbetiae_contig11615.1401.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11615 2846..3907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11615.1401.1

>prot_L-elsbetiae_contig11615.1401.1 ID=prot_L-elsbetiae_contig11615.1401.1|Name=mRNA_L-elsbetiae_contig11615.1401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
QVLIFVCIGAAFTISMMWYHEYQTLSGGQRPPQGKALRGDDVVAPTPPVG
GAGKGAGAGAGGGGDGGGGLETSSRAVDFIEVGGTIGSQDNKPPAGYGAG
GGGDSIEIGGGSGSVGGGDVSVLDSKDELLKPSDDSGGDSGDATDNGEKG
STSSQETQQKGSQGGEPAVVVNPAPGTAANNNSNAGQ
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mRNA from alignment at L-elsbetiae_contig11615:2846..3909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11615.1401.1 ID=mRNA_L-elsbetiae_contig11615.1401.1|Name=mRNA_L-elsbetiae_contig11615.1401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1064bp|location=Sequence derived from alignment at L-elsbetiae_contig11615:2846..3909+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCTGATCTTCGTGTGCATCGGGGCGGCTTTCACGATCAGCATGAT
GTGGTACCACGAGTACCAAACACTCTCGGGGGGACAGCGACCGCCGCAGG
GCAAAGCTTTGAGGGGCGACGATGTTGTGGCGCCAACACCACCAGTAGGG
GGCGCGGGGAAAGGAGCAGGAGCAGGAGCAGGTGGGGATTGTTTTTCTCT
ATTTATGCCAAAACTGTTTACTACTGCTGTTGAATTTTTTGTTTTTGTAG
AGGTGTATGATATGTGTGTACATCTGTTATTCCGGTCCAGGTGCTTGGCA
CGAAACCACCCGGCATTGGAGGACGGCACTGGAGAAGATGTTATGGTTGA
GCCGACGGGCCTTTCGTCCTTGTTTGCTTTGCTTTGCTTTGCTTCTTTCC
TAGGTCGCTTTTCAGCAGCGCAGTCTCATGCCGCGAGCAAGCCCAGAAAC
AATCAAAACCCACCCGAATCACCTGAACTAATTGAACTTGAAAGAAGCTT
GGTAGGTTGCATGTACAGAGAGCAGGCGTTCAGTAGGTTCCAAACCGGTC
CCTACACCAAAATTCGCCTTTTATCTCTCTCTCTATCTCCCCCCTGCACT
CTCCCCCTCACCCCTGATTCCTCGGCCTTGATTGTATTCTTCCGCTCTAC
CCGGCCTCCGGCTCCAACGCCACCAAATGAAGGCGGTGGCGGTGATGGCG
GCGGCGGTTTAGAAACCTCCTCGAGAGCGGTGGATTTCATAGAAGTAGGA
GGGACAATAGGCAGTCAAGACAACAAGCCGCCGGCGGGATACGGTGCGGG
TGGCGGCGGGGATAGTATAGAGATCGGCGGCGGTAGCGGCAGCGTAGGCG
GAGGGGACGTAAGCGTGCTCGACTCGAAGGACGAGCTGCTGAAACCTTCG
GACGACAGCGGGGGTGACAGCGGAGACGCCACCGACAACGGCGAAAAGGG
CAGCACCAGCAGCCAGGAAACCCAACAGAAGGGCAGTCAAGGCGGAGAGC
CCGCAGTCGTGGTGAACCCGGCGCCGGGAACCGCGGCGAATAACAATAGC
AATGCGGGGCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11615:2846..3909+

>mRNA_L-elsbetiae_contig11615.1401.1 ID=mRNA_L-elsbetiae_contig11615.1401.1|Name=mRNA_L-elsbetiae_contig11615.1401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig11615:2846..3909+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCTGATCTTCGTGTGCATCGGGGCGGCTTTCACGATCAGCATGAT
GTGGTACCACGAGTACCAAACACTCTCGGGGGGACAGCGACCGCCGCAGG
GCAAAGCTTTGAGGGGCGACGATGTTGTGGCGCCAACACCACCAGTAGGG
GGCGCGGGGAAAGGAGCAGGAGCAGGAGCAGCAGGTGCTGATCTTCGTGT
GCATCGGGGCGGCTTTCACGATCAGCATGATGTGGTACCACGAGTACCAA
ACACTCTCGGGGGGACAGCGACCGCCGCAGGGCAAAGCTTTGAGGGGCGA
CGATGTTGTGGCGCCAACACCACCAGTAGGGGGCGCGGGGAAAGGAGCAG
GAGCAGGAGCAGGCGGTGGCGGTGATGGCGGCGGCGGTTTAGAAACCTCC
TCGAGAGCGGTGGATTTCATAGAAGTAGGAGGGACAATAGGCAGTCAAGA
CAACAAGCCGCCGGCGGGATACGGTGCGGGTGGCGGCGGGGATAGTATAG
AGATCGGCGGCGGTAGCGGCAGCGTAGGCGGAGGGGACGTAAGCGTGCTC
GACTCGAAGGACGAGCTGCTGAAACCTTCGGACGACAGCGGGGGTGACAG
CGGAGACGCCACCGACAACGGCGAAAAGGGCAGCACCAGCAGCCAGGAAA
CCCAACAGAAGGGCAGTCAAGGCGGAGAGCCCGCAGTCGTGGTGAACCCG
GCGCCGGGAACCGCGGCGAATAACAATAGCAATGCGGGGCAGGCGGTGGC
GGTGATGGCGGCGGCGGTTTAGAAACCTCCTCGAGAGCGGTGGATTTCAT
AGAAGTAGGAGGGACAATAGGCAGTCAAGACAACAAGCCGCCGGCGGGAT
ACGGTGCGGGTGGCGGCGGGGATAGTATAGAGATCGGCGGCGGTAGCGGC
AGCGTAGGCGGAGGGGACGTAAGCGTGCTCGACTCGAAGGACGAGCTGCT
GAAACCTTCGGACGACAGCGGGGGTGACAGCGGAGACGCCACCGACAACG
GCGAAAAGGGCAGCACCAGCAGCCAGGAAACCCAACAGAAGGGCAGTCAA
GGCGGAGAGCCCGCAGTCGTGGTGAACCCGGCGCCGGGAACCGCGGCGAA
TAACAATAGCAATGCGGGGCAG
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