mRNA_L-elsbetiae_contig11613.1400.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11613.1400.1
Unique NamemRNA_L-elsbetiae_contig11613.1400.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: D8LU98_ECTSI (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU98_ECTSI)

HSP 1 Score: 622 bits (1603), Expect = 7.910e-219
Identity = 326/412 (79.13%), Postives = 352/412 (85.44%), Query Frame = 2
Query:  119 MSARCSTCRSSARWAKLLLL-TCGGSQVRDVAGFGLGVRPAAFLQQQQQHTTTYPAVQVRMSESGATEHSSGDRGRY-LEPTDRGEFLRNSAAFLVGGSAAMVAAVAAVAGSPQPAEAIGDLYEFKEQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAG---GEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAPGSPFEPEQPQGSIFMAYEGEAFGVVLLPAAKGDQINPGGAVSVAILAEDVEKIAEDLGGRVSVDSDRGGVRSVAVADPDGYRLNFVEYGDWQKQLPRLV 1339
            M  R STCR   RWA+LL+L TCG  +V   AGFGLG RP+  +QQ+Q HT T  A QV MSES A++ SS  RG    EPT RG+FLRNSAAFL GGSAA+ AA  A AG P  AEAIGDLYEFK+QARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSS N YGGHFTLELN+QKE A     GEEDVDFFYDPGNGVQFLQIAVDSYRISQV+KAGGIIESGYG+LQVLAPGGLRLKLLSGSRRDPPMF+AVKVKDM RSV+WYTD+AGM+K PFP+AR  GSPFEPEQP GS+FMAYEGEAFGVVL+PAAKGDQINPG  VSVA+LAEDVEKIAE LGG+VSVDS RGG +SVAVADPDGY + FVEY DW+ QLPRLV
Sbjct:    1 MKTRSSTCRC-VRWAQLLVLSTCGDIRVWQAAGFGLGARPSVPVQQKQ-HTATCSATQVLMSESQASDRSSSRRGEGGAEPTGRGDFLRNSAAFLAGGSAAIAAATTAGAGFPSAAEAIGDLYEFKDQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAGAAEDGEEDVDFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGSRRDPPMFLAVKVKDMKRSVQWYTDVAGMTKFPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINPGSVVSVAVLAEDVEKIAESLGGKVSVDSARGGGKSVAVADPDGYGVKFVEYSDWRGQLPRLV 410          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A835YIX3_9STRA (VOC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIX3_9STRA)

HSP 1 Score: 269 bits (688), Expect = 2.250e-81
Identity = 153/303 (50.50%), Postives = 198/303 (65.35%), Query Frame = 2
Query:  437 VAGSPQPAEAIGDLYEFKEQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNT--TVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKAR-APGSPFEPEQPQGSIFMAYEGEAFGVVLLPAAKGDQ--INPGGAVS-VAILAEDVEKIAEDLGGRVSVDSDRGGVRSVAVADPDGYRLNFVEYGDWQKQL 1327
            VAGSP+   AIG+L E   Q RF QHA V VPD+ AA++FY +G+GM+V+R+RA    NT  T V +GPE L VP  +  GVSS  AYGGHF+LEL       A GE     FYDPGNGVQ++QIAVD+YRIS+VI AGG +  GYG        GL++ L SG RRDP MF+A+KV D+ +SV+WYTD+ GMS+ P+PKAR A  S FEP+QP+GS+FM Y+ +  GV+L+P  K D+  I  G A S +A+LA DVE   + +G   +  +         VADPDGY    VEY D+ ++L
Sbjct:   86 VAGSPEGCNAIGELPETLSQKRFVQHAVVNVPDIEAAIRFYTEGLGMRVVRSRADTSANTNTTFVAYGPEQLTVPKDWAPGVSSFAAYGGHFSLELVGPLNPPADGELP---FYDPGNGVQYIQIAVDTYRISKVIAAGGEVIFGYG--------GLKINLFSGVRRDPMMFVALKVSDLKKSVQWYTDVLGMSQFPYPKAREAVDSVFEPKQPKGSVFMGYDEDGSGVLLIPKDKKDKAPIVVGSAYSKLAVLATDVEDEGKRVGAMYAGKAPGTSTSVAVVADPDGYTTVLVEYDDFAREL 377          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A4D9D405_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D405_9STRA)

HSP 1 Score: 209 bits (533), Expect = 9.080e-59
Identity = 128/305 (41.97%), Postives = 182/305 (59.67%), Query Frame = 2
Query:  449 PQPAEAIGDLYEFKEQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAPGSPFEPEQPQGSIFMAYEGEAFGVVLLPAAKGDQ---INPGGAVS-VAILAEDV--EKIAEDL---GGRVSVDSDRGGVRSVAVADPD---GYRLNFVEYGDWQKQL 1327
            P  A AIG+L E+    RF QH  + VPDMAAAL FY+DG+ M+V+R+R     N+T VG+GPE L+ P  +  GVSS + YG HF LELN   EV    E D     DPGN   +LQ+AV S R+S++ +AGG I+S YG++ V +PGGLR +++ G RRDP M +A+ V D+ ++  +Y +  GM + P+P +R P S +EP+QP+GS F+A+  + FG++LLP  K +    +  GG V  +AIL  DV  +  AED    G  V    +  G+ +      D   G  +  VE  D +K+L
Sbjct:   55 PNAANAIGELPEWASNPRFTQHLVINVPDMAAALSFYIDGLQMQVLRSRLVGGQNSTFVGYGPETLKTPKGWYPGVSSFSMYGAHFALELN---EVLKTEEGDTPVL-DPGNAAAYLQLAVPSLRLSKLAEAGGKIKSAYGWVLVDSPGGLRHQVIVGMRRDPIMMLALNVPDVQKASHFYVNSLGMQEQPYPLSRIPESIYEPKQPKGSRFLAFNEDGFGILLLPLPKKEAKAGVRLGGVVDKLAILGTDVVGKGGAEDWKASGVDVKFAGEAPGIGTKVAVTQDPVTGLGVVLVEAEDLEKEL 355          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A7S2UZ58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ58_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.650e-57
Identity = 113/269 (42.01%), Postives = 161/269 (59.85%), Query Frame = 2
Query:  407 SAAMVAAVAAVAGSPQPAEAIGDLYEFKEQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAPGSPFEPEQPQGSIFMAYEGEAFGVVLLPAAKGDQINPGGAVS-VAILAEDVEKIAED 1210
            S+A++ +VA   G  QP  +IG+L EF + A+F QH  V+V DM AAL+F + G+ M V+RTR     N T VG+GPE L  P  FV GVSS   YGGHF+LEL +        E+   F  +PG  +Q++Q+A  +    ++IKAGGII  GYG+  V+AP GL  ++     RDP  +IA+KVKDM +S+ +Y  + GM KL +   R   S FEP QP+GS+ M Y   +  ++L+PA + D I  G   + +AI+   VE I ++
Sbjct:   12 SSAILGSVALSQGLSQPGWSIGELPEFSDDAKFIQHMVVRVEDMDAALEFCLKGLQMSVLRTRLVDGINGTFVGYGPEQLSPPEDFVPGVSSFARYGGHFSLELVSPTTPL---EQRKPFANNPGTALQYIQLAAPNLSFGKLIKAGGIITGGYGYADVIAPFGLPFRVFVADTRDPAQYIAMKVKDMKKSIAYYEKVLGMKKLSYEMLRVKDSSFEPIQPKGSVVMGYNENSCNILLIPATRQDTIEVGNVFAKLAIVTNGVEDIGKE 277          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A0G4EHT2_VITBC (VOC domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHT2_VITBC)

HSP 1 Score: 205 bits (521), Expect = 1.650e-57
Identity = 128/303 (42.24%), Postives = 170/303 (56.11%), Query Frame = 2
Query:  467 IGDLYEFKEQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLF--NTTVVGFGPEALE---VPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDF-----FYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARA-PGSPFEPEQPQGSIFMAYEGEAFGVVLLPA----AKGDQINPGGAVS-VAILAEDVEKIAEDLGGRVSVDSDRGGVRSVAVADPDGYRLNFVEYGDWQKQL 1327
            +G L E +   R+ QHA V VP M  AL FY  G+GM+VIRTR  P    N T VG+GPE L+   V   F  G+SS N YG HFTLEL  ++       +D D       Y+PGNGVQFLQIA+   R+SQ+ + GG I   YG+++V APGGL L+++ G RRDP MF    VKD++ +  +Y    GM +LP+ KAR  P SP EP+QPQ S +M Y  + FG++L+      AK   I  G     +AIL+ +V +    L    +      G    A  D  GY L  VEY D++K+L
Sbjct:    1 MGTLPETQNLERYIQHAVVNVPKMDDALNFYTRGLGMRVIRTRTNPAKTNNVTFVGYGPETLDLKRVENGFRPGISSYNEYGAHFTLELIEKRVPPELKSDDEDAQPVVQAYEPGNGVQFLQIALPFLRVSQLAETGGNIRRAYGWIEVDAPGGLPLRIIIGERRDPFMFACFTVKDLSAAKSFYETRLGMRELPYQKARYNPDSPLEPKQPQESAYMGYSEDTFGLLLVQQDKKIAKKTPIEVGSVFDKLAILSRNVVEEGPSLNAGFTGPVPGIGTNVAAFKDAQGYGLVLVEYDDFEKEL 303          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A5B8MYG2_9CHLO (Putative glyoxalase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYG2_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 6.550e-25
Identity = 85/286 (29.72%), Postives = 142/286 (49.65%), Query Frame = 2
Query:  503 FAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAV-DSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAPGSPFEPEQPQGSIFMAYEG--EAFGVVLLPAAKGDQINPGGAVSVAILAEDVEK-----IAEDLGGRVSVDSDRGGVRSVAVADP-DGYRLNFVEYGDWQKQLPR 1333
            F QHA ++V D+  ++KF+  G+GMKV RTR     N   V FGPE L              A GG F LEL                     N  QF Q A+ +S R+++V  +GG I  G+G+ ++ AP G ++ +   +RRDP   + V V D+  + ++Y  + GM+       +  G  FEP + +GS+ M Y    E  G++L+P +   + +   ++ +A+L +DV +     +A  L  + + +    G   V++A P +G  L FV+Y D++++ P+
Sbjct:  154 FLQHAVLEVKDLDKSVKFWTQGLGMKVNRTRG----NQAFVSFGPETLTA------------ADGGKFALELVENPSTTQD------------NSGQFFQFALSNSLRVNRVANSGGDITFGFGYFEITAPDGYKVVVYIENRRDPFDLVGVYVNDVDAAAKYYERVFGMAADRSYGDKEVGR-FEPARIKGSVLMTYGAADENTGILLVPKSSSKEASSVQSIKIAVLDKDVNERKEKLVAAGLTPKFTGEVPGTGGTKVSLAVPREGVPLVFVDYNDFEREQPK 410          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A0M0JPX6_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JPX6_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 4.310e-20
Identity = 72/233 (30.90%), Postives = 115/233 (49.36%), Query Frame = 2
Query:  503 FAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKL-LSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAP------------GSPFEPEQPQGSIFMAYEGEAF--GVVLLPAAKGDQINPG 1156
            F Q   + VPDM  A+ F+  G G  V+ T+     N T +GFGP+++            +   G  F LE+      +          ++ G  +Q++Q+A+  +R+SQV+K GG I+S YG+ Q+ APGGL L++ +  SRRDP  F+A++   +  SV  Y  + G+ K+     R                 +EP++  GSI M+Y  +    GV+LLP  KG ++  G
Sbjct:  105 FYQSMRIGVPDMDKAVTFWTKGCGALVLDTKLVNGVNVTRIGFGPQSI------------RRDDGAKFALEMVEGPSTS----------FETGGVLQYVQLAIPIFRLSQVMKNGGDIQSAYGWTQLTAPGGLPLRVHIDESRRDPFEFVALRTSSLKSSVAHYESL-GLRKVDEKSGRKVELSINKNTIFENSDAYEPDREVGSILMSYGDKKAETGVLLLPPLKGAKLITG 314          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A8J5XKT4_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKT4_DIALT)

HSP 1 Score: 100 bits (248), Expect = 5.780e-19
Identity = 61/181 (33.70%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  521 VQVPDMAAALKFYVDGVGMKVIRT-RAGPL-FNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLEL-NTQKEVAAGGEEDVDF-FYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAPGSP 1051
            V+VPD+AAA +F++DG+ M  +R+ R GP      VVG+G E L+               GG F+LEL        A     +D    +    + ++Q+ V + RIS ++++GG IES YG+++V +PGGL +++++  RRDP  F+A++V D+  +  +Y    GM ++P P  R    P
Sbjct:  131 VRVPDLAAARRFWLDGLKMSELRSSRVGPDGAEGIVVGYGREGLDEDD------------GGKFSLELVQASARAPAPARLALDAPDAEAAGALLYVQLRVPNVRISGLVQSGGAIESAYGYVEVTSPGGLAVRVITAPRRDPVEFVALRVPDVEAAAAYYERAFGMRRIPSPPRRTERGP 299          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A7S2H0Q2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2H0Q2_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.400e-18
Identity = 68/235 (28.94%), Postives = 115/235 (48.94%), Query Frame = 2
Query:  503 FAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKL-LSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARA-------------PGSPFEPEQPQGSIFMAYEGEAF--GVVLLPAAKGDQ-INPG 1156
            F +   + VP++  A++F+  G G  ++ +R     N T +GFGP+            S +   G  F LEL           E    F+   + +Q++Q+A+  +R+SQV+  GG I S YG+ +V+APGGL L++ +  +RRDP  FIA++  ++  + + Y ++ GM+ L     +                   EPE+  GS+ M +       GV+LLP  KG + ++PG
Sbjct:  105 FCRGLRIGVPNLDEAVRFWTSGCGALLLDSRMIDGHNVTTIGFGPQ------------SPRAEDGAKFALEL----------VEGAPTFFGDDSPLQYIQLAMPIFRLSQVVAYGGKILSAYGWTEVIAPGGLPLRVRIEETRRDPFEFIALRTSNLRAATKHYEEVLGMNTLSETSRKKFKLESINQNTIFENSDALEPEREAGSVLMTFGAAELTTGVLLLPPTKGRKALDPG 317          
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Match: A0A7S0IK92_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IK92_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 2.900e-17
Identity = 73/235 (31.06%), Postives = 116/235 (49.36%), Query Frame = 2
Query:  491 EQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLELNTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGYGFLQVLAPGGLRLKL-LSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKLPFPKARAP---------GSPFEPEQPQGSIFMAY-EGEAF-GVVLLP--AAKGDQINP 1153
            E++ F Q   V V D+  AL F+ +G+G  V  TR     N TVVGFGPE+L                G  F++EL +      G +            +Q++Q+A+  +R+SQ +  GG I+S YG+  ++APGG  L++ +  +RRDP  F A++V ++  +V  +      +  PF K +              FEP++  G+  M+Y + EA  GV+LLP  A K   ++P
Sbjct:  129 ERSHFLQRLAVPVDDIEGALNFWRNGLGALVRSTRIVDGRNVTVVGFGPESLRAVD------------GAKFSVELVSAPTSVEGSQ------------LQYIQLAMPVFRLSQAMAYGGDIKSAYGWTDLVAPGGTPLRVRIDETRRDPFEFAALRVSNLKAAVRHFEAFGMSAGEPFGKRKLSLLGNTAFEDRDAFEPDRELGATLMSYGDPEASTGVLLLPPLARKAVPLSP 339          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11613.1400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LU98_ECTSI7.910e-21979.13VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YIX3_9STRA2.250e-8150.50VOC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D405_9STRA9.080e-5941.97Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2UZ58_9STRA1.650e-5742.01Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0G4EHT2_VITBC1.650e-5742.24VOC domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A5B8MYG2_9CHLO6.550e-2529.72Putative glyoxalase n=3 Tax=Chloropicon primus Tax... [more]
A0A0M0JPX6_9EUKA4.310e-2030.90Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A8J5XKT4_DIALT5.780e-1933.70Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S2H0Q2_9EUKA1.400e-1828.94Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0IK92_9EUKA2.900e-1731.06Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11613contigL-elsbetiae_contig11613:1821..4639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score626.7
Seed ortholog evalue7.6e-177
Seed eggNOG ortholog2880.D8LU98
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1763
Cds size1224
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11613.1400.1prot_L-elsbetiae_contig11613.1400.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11613 2498..4218 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.2692795-UTR-L-elsbetiae_contig11613:1820..18591622815365.2692795-UTR-L-elsbetiae_contig11613:1820..1859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11613 1821..1859 +
1691682862.824645-UTR-L-elsbetiae_contig11613:1820..18591691682862.824645-UTR-L-elsbetiae_contig11613:1820..1859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11613 1821..1859 +
1622815365.2827442-UTR-L-elsbetiae_contig11613:2418..24971622815365.2827442-UTR-L-elsbetiae_contig11613:2418..2497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11613 2419..2497 +
1691682862.8356953-UTR-L-elsbetiae_contig11613:2418..24971691682862.8356953-UTR-L-elsbetiae_contig11613:2418..2497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11613 2419..2497 +
1622815365.3279037-UTR-L-elsbetiae_contig11613:4218..46391622815365.3279037-UTR-L-elsbetiae_contig11613:4218..4639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11613 4219..4639 +
1691682862.865942-UTR-L-elsbetiae_contig11613:4218..46391691682862.865942-UTR-L-elsbetiae_contig11613:4218..4639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11613 4219..4639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.2963305-CDS-L-elsbetiae_contig11613:2497..26031622815365.2963305-CDS-L-elsbetiae_contig11613:2497..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11613 2498..2603 +
1691682862.844992-CDS-L-elsbetiae_contig11613:2497..26031691682862.844992-CDS-L-elsbetiae_contig11613:2497..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11613 2498..2603 +
1622815365.3134706-CDS-L-elsbetiae_contig11613:3100..42181622815365.3134706-CDS-L-elsbetiae_contig11613:3100..4218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11613 3101..4218 +
1691682862.8562124-CDS-L-elsbetiae_contig11613:3100..42181691682862.8562124-CDS-L-elsbetiae_contig11613:3100..4218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11613 3101..4218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11613.1400.1

>prot_L-elsbetiae_contig11613.1400.1 ID=prot_L-elsbetiae_contig11613.1400.1|Name=mRNA_L-elsbetiae_contig11613.1400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=408bp
MSARCSTCRSSARWAKLLLLTCGGSQVRDVAGFGLGVRPAAFLQQQQQHT
TTYPAVQVRMSESGATEHSSGDRGRYLEPTDRGEFLRNSAAFLVGGSAAM
VAAVAAVAGSPQPAEAIGDLYEFKEQARFAQHATVQVPDMAAALKFYVDG
VGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSQNAYGGHFTLEL
NTQKEVAAGGEEDVDFFYDPGNGVQFLQIAVDSYRISQVIKAGGIIESGY
GFLQVLAPGGLRLKLLSGSRRDPPMFIAVKVKDMTRSVEWYTDIAGMSKL
PFPKARAPGSPFEPEQPQGSIFMAYEGEAFGVVLLPAAKGDQINPGGAVS
VAILAEDVEKIAEDLGGRVSVDSDRGGVRSVAVADPDGYRLNFVEYGDWQ
KQLPRLV*
back to top

mRNA from alignment at L-elsbetiae_contig11613:1821..4639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11613.1400.1 ID=mRNA_L-elsbetiae_contig11613.1400.1|Name=mRNA_L-elsbetiae_contig11613.1400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2819bp|location=Sequence derived from alignment at L-elsbetiae_contig11613:1821..4639+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGAGAGTTTGTGCACCGTGCCCGGGACACAGCGAGAGGTGAGAGAAGC AAACCTATCCTAGATGAGCTGGAACCCTTTTATGTTTGAGTGTGTAAACG CGCTAGTGCCGACTCATTTACAATTTGAACTCGGCGGCTGTGTGCATGAT CGGCGGAGTTGCCTCTGAGCTCTTTGCATGATCTCGATGCCTTGGGAAAA GCATGCTATCAAACTGGAAAGCGGCAAAGGCAACGAGCGTTTTGAAAGGT GAACTGTATCTGCTGCTCGCTTCAAGCTGCAGTCCTGCATCGCATCAGAA GTGAAAATAGACTCAACAGGAAACCTGACCGTTGGCTGTTGAGTCAGGGA CGCTCCCATATCATAGCGCTCCGGCACACACATCCAGACCCCCACTAGCT GCAATGGGTTCGTTCTTTTCAGCGTTAACAGCAGCCTTTGTACGTGTTTC TGGCATGCCACGTGTAGCTGACAACGTCTGTTCTGCCATTTACGAAGAAC TTCCGCGCAACCGCCGTGGACTCATCAGCATGGACCGATCAGCTTGGGTT CGGTCGTTATGTTTCCCTCTGTTGTCGCTGCTCCTCGCTACTGCTCAGGG GCAGCAACGTTCAACGGCGGTGCTACAAAACGTGTGCACCTTTTCTGCAA ACCGGGTGTGGACTCTCGGTCGGGAACATGAGTGCACGTTGTAGCACATG CCGCAGCTCGGCGAGATGGGCGAAACTCCTCTTGCTCACCTGCGGAGGTT CTCAAGTCCGGGATGTGGCAGGCTTCGGGCTAGGCGAGTAGTAGGGGCAA AAGGCAACAGCTATCAGCATGCACTTCTGTACATAGTAGCACCTTGCTTT CCACAAGGACCAAGGACAATCTTCAATAATAACATATGTGTATACGTGCG TTCGACGTCGGCAGCAAGCCGAAGCGCTTTCCCGCCAGGGGCAAGGTGTC CTACCTTTCGAAGTTGGCGGTCCTTGTGTTGGAGCGTAAATTAGATGAGA GAGGTCTCCATGTTGGAGCAGGAGCAGGACAACTCCTTCCATTCGTACAC ACCTGAGATCAGCAGGCACTTACTGCTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTGCTAAAACGGCGGTGCGAGCTATTTGTTTGCAAATATTACACA CGACATCCCGCTTCTTTTTCACTCCAAAATCTCACACCATGCTTCTACCG TTACTCCTGCTCACTCTTATATTTGGCTTCGATCGCTTTCATCGTCGTGC CTCGTCGTGAAAAATTACCGCGCTGCGCAGGAGTCCGGCCAGCGGCGTTC TTGCAGCAGCAACAACAGCACACAACGACGTATCCAGCGGTCCAAGTGCG CATGTCGGAGTCGGGGGCAACTGAGCACAGCAGCGGTGATCGAGGGAGAT ATTTAGAACCAACGGACAGAGGAGAATTTCTACGCAATTCCGCCGCGTTT CTCGTCGGGGGCAGCGCCGCGATGGTAGCCGCGGTCGCCGCAGTAGCGGG CTCGCCGCAGCCCGCCGAGGCCATCGGGGACCTGTACGAGTTTAAGGAAC AGGCCCGCTTCGCCCAGCACGCGACCGTGCAGGTACCGGACATGGCGGCC GCGCTAAAGTTTTACGTCGACGGCGTCGGCATGAAGGTGATCCGCACGCG CGCGGGCCCCCTGTTCAACACCACTGTCGTCGGGTTCGGCCCCGAGGCGC TCGAGGTGCCGCCGTCGTTCGTGTTCGGCGTGAGCTCCCAGAACGCGTAC GGGGGACACTTTACGCTGGAGCTCAACACGCAGAAGGAGGTTGCGGCGGG AGGGGAGGAGGACGTCGACTTCTTTTACGACCCCGGAAACGGGGTTCAGT TCTTGCAGATAGCGGTGGACTCGTACCGGATATCTCAGGTGATCAAGGCG GGGGGCATCATTGAGTCCGGCTACGGGTTTCTGCAGGTCTTGGCCCCGGG AGGGCTGCGGCTGAAGCTCTTGAGCGGTTCAAGACGAGACCCTCCCATGT TCATCGCGGTGAAGGTCAAGGACATGACAAGATCTGTGGAATGGTACACC GACATAGCCGGGATGTCCAAGCTCCCGTTCCCGAAAGCCCGGGCCCCCGG CTCCCCGTTCGAGCCGGAACAGCCACAAGGCAGCATCTTCATGGCGTACG AGGGAGAGGCGTTCGGGGTAGTGCTCCTCCCCGCCGCCAAGGGGGACCAG ATAAACCCGGGCGGCGCCGTGTCCGTCGCGATCCTGGCGGAGGACGTCGA GAAAATCGCGGAGGACCTCGGTGGGAGAGTTAGCGTTGATAGTGACAGGG GAGGGGTGCGGTCGGTGGCGGTCGCAGACCCGGATGGGTATCGTCTGAAC TTCGTAGAATACGGCGACTGGCAGAAGCAGCTTCCCCGTCTGGTGTAACT TCGTTGCCTCTAAGGCAGCGGTTTTAGTGTTGGGAAACAGCCACTATTTT ATCACACGCTGTTTAAAGTGGCCACTCGTTTGTCGTCGGCTAAACGTCCG TCGAAAAGAGGAACATTAGACTAGACGGTAGAGATCCTAAAGCAGGTGAC TGGCGCGTAAACTGCAACTGCAGAGGCGGATGAACCTTAGCCTTGTGAGT TGCCGTTGTACACATGTGCCTAAAGAGTTTGTGGTTCATCACACGACGGG TTTGTGCTCGCGTGCAATCCACAACAATCACAGTTGTTAGAGATGGGTAC CTCGCCGCTACCGCGCCTGCTCGGTGGGTGGGCTCGGAGGAGAAGATCGC GTTGATTGCGCCACGCCTGGTTGCTCAATATTTACATTGGCACGAACCGG AGCGTGCAGTCAGTGGGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11613:1821..4639+

>mRNA_L-elsbetiae_contig11613.1400.1 ID=mRNA_L-elsbetiae_contig11613.1400.1|Name=mRNA_L-elsbetiae_contig11613.1400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2448bp|location=Sequence derived from alignment at L-elsbetiae_contig11613:1821..4639+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGCACGTTGTAGCACATGCCGCAGCTCGGCGAGATGGGCGAAACT
CCTCTTGCTCACCTGCGGAGGTTCTCAAGTCCGGGATGTGGCAGGCTTCG
GGCTAGATGAGTGCACGTTGTAGCACATGCCGCAGCTCGGCGAGATGGGC
GAAACTCCTCTTGCTCACCTGCGGAGGTTCTCAAGTCCGGGATGTGGCAG
GCTTCGGGCTAGGAGTCCGGCCAGCGGCGTTCTTGCAGCAGCAACAACAG
CACACAACGACGTATCCAGCGGTCCAAGTGCGCATGTCGGAGTCGGGGGC
AACTGAGCACAGCAGCGGTGATCGAGGGAGATATTTAGAACCAACGGACA
GAGGAGAATTTCTACGCAATTCCGCCGCGTTTCTCGTCGGGGGCAGCGCC
GCGATGGTAGCCGCGGTCGCCGCAGTAGCGGGCTCGCCGCAGCCCGCCGA
GGCCATCGGGGACCTGTACGAGTTTAAGGAACAGGCCCGCTTCGCCCAGC
ACGCGACCGTGCAGGTACCGGACATGGCGGCCGCGCTAAAGTTTTACGTC
GACGGCGTCGGCATGAAGGTGATCCGCACGCGCGCGGGCCCCCTGTTCAA
CACCACTGTCGTCGGGTTCGGCCCCGAGGCGCTCGAGGTGCCGCCGTCGT
TCGTGTTCGGCGTGAGCTCCCAGAACGCGTACGGGGGACACTTTACGCTG
GAGCTCAACACGCAGAAGGAGGTTGCGGCGGGAGGGGAGGAGGACGTCGA
CTTCTTTTACGACCCCGGAAACGGGGTTCAGTTCTTGCAGATAGCGGTGG
ACTCGTACCGGATATCTCAGGTGATCAAGGCGGGGGGCATCATTGAGTCC
GGCTACGGGTTTCTGCAGGTCTTGGCCCCGGGAGGGCTGCGGCTGAAGCT
CTTGAGCGGTTCAAGACGAGACCCTCCCATGTTCATCGCGGTGAAGGTCA
AGGACATGACAAGATCTGTGGAATGGTACACCGACATAGCCGGGATGTCC
AAGCTCCCGTTCCCGAAAGCCCGGGCCCCCGGCTCCCCGTTCGAGCCGGA
ACAGCCACAAGGCAGCATCTTCATGGCGTACGAGGGAGAGGCGTTCGGGG
TAGTGCTCCTCCCCGCCGCCAAGGGGGACCAGATAAACCCGGGCGGCGCC
GTGTCCGTCGCGATCCTGGCGGAGGACGTCGAGAAAATCGCGGAGGACCT
CGGTGGGAGAGTTAGCGTTGATAGTGACAGGGGAGGGGTGCGGTCGGTGG
CGGTCGCAGACCCGGATGGGTATCGTCTGAACTTCGTAGAATACGGCGAC
TGGCAGAAGCAGCTTCCCCGTCTGGTGTAAGAGTCCGGCCAGCGGCGTTC
TTGCAGCAGCAACAACAGCACACAACGACGTATCCAGCGGTCCAAGTGCG
CATGTCGGAGTCGGGGGCAACTGAGCACAGCAGCGGTGATCGAGGGAGAT
ATTTAGAACCAACGGACAGAGGAGAATTTCTACGCAATTCCGCCGCGTTT
CTCGTCGGGGGCAGCGCCGCGATGGTAGCCGCGGTCGCCGCAGTAGCGGG
CTCGCCGCAGCCCGCCGAGGCCATCGGGGACCTGTACGAGTTTAAGGAAC
AGGCCCGCTTCGCCCAGCACGCGACCGTGCAGGTACCGGACATGGCGGCC
GCGCTAAAGTTTTACGTCGACGGCGTCGGCATGAAGGTGATCCGCACGCG
CGCGGGCCCCCTGTTCAACACCACTGTCGTCGGGTTCGGCCCCGAGGCGC
TCGAGGTGCCGCCGTCGTTCGTGTTCGGCGTGAGCTCCCAGAACGCGTAC
GGGGGACACTTTACGCTGGAGCTCAACACGCAGAAGGAGGTTGCGGCGGG
AGGGGAGGAGGACGTCGACTTCTTTTACGACCCCGGAAACGGGGTTCAGT
TCTTGCAGATAGCGGTGGACTCGTACCGGATATCTCAGGTGATCAAGGCG
GGGGGCATCATTGAGTCCGGCTACGGGTTTCTGCAGGTCTTGGCCCCGGG
AGGGCTGCGGCTGAAGCTCTTGAGCGGTTCAAGACGAGACCCTCCCATGT
TCATCGCGGTGAAGGTCAAGGACATGACAAGATCTGTGGAATGGTACACC
GACATAGCCGGGATGTCCAAGCTCCCGTTCCCGAAAGCCCGGGCCCCCGG
CTCCCCGTTCGAGCCGGAACAGCCACAAGGCAGCATCTTCATGGCGTACG
AGGGAGAGGCGTTCGGGGTAGTGCTCCTCCCCGCCGCCAAGGGGGACCAG
ATAAACCCGGGCGGCGCCGTGTCCGTCGCGATCCTGGCGGAGGACGTCGA
GAAAATCGCGGAGGACCTCGGTGGGAGAGTTAGCGTTGATAGTGACAGGG
GAGGGGTGCGGTCGGTGGCGGTCGCAGACCCGGATGGGTATCGTCTGAAC
TTCGTAGAATACGGCGACTGGCAGAAGCAGCTTCCCCGTCTGGTGTAA
back to top