mRNA_L-elsbetiae_contig11613.1399.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11613.1399.1
Unique NamemRNA_L-elsbetiae_contig11613.1399.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11613.1399.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-9
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:   28 LLVKAGADL---WEEDLCYTGSTPLDLAAENGPSKMMRVLIEARASPNSRRLVGSTPLFRAALEKHVDAVKVLL 240
            +LV+AGA L    ++ LC    TPL +AA NG +  M  L+EA A+ NSRR  G+TPLF AA E +VDAV++LL
Sbjct:    1 MLVEAGAPLEVATKQQLC----TPLQIAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLL 70
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BLAST of mRNA_L-elsbetiae_contig11613.1399.1 vs. uniprot
Match: UPI001F5D8C51 (ankyrin repeat, PH and SEC7 domain containing protein secG-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D8C51)

HSP 1 Score: 49.3 bits (116), Expect = 6.370e-5
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   28 LLVKAGADLWEEDLCYTGSTPLDLAAENGPSKMMRVLIEARASPNSRRLVGSTPLFRAALEKHVDAVKVLL 240
            L+ ++G D+    +  TG+TP+  AA  G  ++MR L++    P      GSTPL RAA+  H +AV++LL
Sbjct:   57 LVEESGIDV--NSVSKTGATPMSYAAREGNVQVMRYLLDRGGDPAMPDERGSTPLHRAAVHGHCEAVRLLL 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11613.1399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXY7_ECTSI1.370e-951.35EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
UPI001F5D8C516.370e-538.03ankyrin repeat, PH and SEC7 domain containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11613contigL-elsbetiae_contig11613:1198..1437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D7FXY7
KEGG koko:K10334
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815365.21662-CDS-L-elsbetiae_contig11613:1197..14371622815365.21662-CDS-L-elsbetiae_contig11613:1197..1437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11613 1198..1437 -
1691682862.8129086-CDS-L-elsbetiae_contig11613:1197..14371691682862.8129086-CDS-L-elsbetiae_contig11613:1197..1437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11613 1198..1437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11613.1399.1prot_L-elsbetiae_contig11613.1399.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11613 1198..1437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11613.1399.1

>prot_L-elsbetiae_contig11613.1399.1 ID=prot_L-elsbetiae_contig11613.1399.1|Name=mRNA_L-elsbetiae_contig11613.1399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
QGGHPAATKLLVKAGADLWEEDLCYTGSTPLDLAAENGPSKMMRVLIEAR
ASPNSRRLVGSTPLFRAALEKHVDAVKVLL
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mRNA from alignment at L-elsbetiae_contig11613:1198..1437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11613.1399.1 ID=mRNA_L-elsbetiae_contig11613.1399.1|Name=mRNA_L-elsbetiae_contig11613.1399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig11613:1198..1437- (Laminarionema elsbetiae ELsaHSoW15)
CAAGGAGGACACCCAGCCGCGACAAAGCTGCTGGTGAAGGCCGGCGCTGA
CCTGTGGGAGGAAGACCTCTGCTACACGGGCTCCACACCACTTGACCTGG
CTGCGGAAAATGGGCCCTCGAAGATGATGAGAGTGTTAATCGAGGCAAGG
GCGAGTCCCAATAGCCGAAGGTTGGTCGGTTCGACCCCGCTGTTCAGAGC
GGCTTTGGAAAAACATGTTGATGCTGTGAAGGTGCTGCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11613:1198..1437-

>mRNA_L-elsbetiae_contig11613.1399.1 ID=mRNA_L-elsbetiae_contig11613.1399.1|Name=mRNA_L-elsbetiae_contig11613.1399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig11613:1198..1437- (Laminarionema elsbetiae ELsaHSoW15)
CAAGGAGGACACCCAGCCGCGACAAAGCTGCTGGTGAAGGCCGGCGCTGA
CCTGTGGGAGGAAGACCTCTGCTACACGGGCTCCACACCACTTGACCTGG
CTGCGGAAAATGGGCCCTCGAAGATGATGAGAGTGTTAATCGAGGCAAGG
GCGAGTCCCAATAGCCGAAGGTTGGTCGGTTCGACCCCGCTGTTCAGAGC
GGCTTTGGAAAAACATGTTGATGCTGTGAAGGTGCTGCTTCAAGGAGGAC
ACCCAGCCGCGACAAAGCTGCTGGTGAAGGCCGGCGCTGACCTGTGGGAG
GAAGACCTCTGCTACACGGGCTCCACACCACTTGACCTGGCTGCGGAAAA
TGGGCCCTCGAAGATGATGAGAGTGTTAATCGAGGCAAGGGCGAGTCCCA
ATAGCCGAAGGTTGGTCGGTTCGACCCCGCTGTTCAGAGCGGCTTTGGAA
AAACATGTTGATGCTGTGAAGGTGCTGCTT
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