mRNA_L-elsbetiae_contig1161.1395.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1161.1395.1
Unique NamemRNA_L-elsbetiae_contig1161.1395.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1161.1395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1161contigL-elsbetiae_contig1161:10126..10992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size868
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.7083442-UTR-L-elsbetiae_contig1161:10125..105001622815364.7083442-UTR-L-elsbetiae_contig1161:10125..10500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1161 10126..10500 +
1691682862.5024536-UTR-L-elsbetiae_contig1161:10125..105001691682862.5024536-UTR-L-elsbetiae_contig1161:10125..10500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1161 10126..10500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.720575-CDS-L-elsbetiae_contig1161:10500..109921622815364.720575-CDS-L-elsbetiae_contig1161:10500..10992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1161 10501..10992 +
1691682862.5118525-CDS-L-elsbetiae_contig1161:10500..109921691682862.5118525-CDS-L-elsbetiae_contig1161:10500..10992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1161 10501..10992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1161.1395.1prot_L-elsbetiae_contig1161.1395.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1161 10501..10992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1161.1395.1

>prot_L-elsbetiae_contig1161.1395.1 ID=prot_L-elsbetiae_contig1161.1395.1|Name=mRNA_L-elsbetiae_contig1161.1395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MYLQHNCCRRHHSPIKRPTTSHDRAPLFSPQRGQTPEKNKITAHARHRTN
KTQSSILPQGHTYARVSSRNALYDVGYAASPNAKKKNYTPVRTDAHTLEL
PKQCGLAAKKCVFLRAGERPQSGKKTANWPIVSGLFAASRRQQVHGALHN
PNPPAVWVSTRTLV
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mRNA from alignment at L-elsbetiae_contig1161:10126..10992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1161.1395.1 ID=mRNA_L-elsbetiae_contig1161.1395.1|Name=mRNA_L-elsbetiae_contig1161.1395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=867bp|location=Sequence derived from alignment at L-elsbetiae_contig1161:10126..10992+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGTATTCCATATAGTGACGTAATATTGGTCCAGCCCAGTAGAAAAAC
ACCTAAATGACGAAAAAGTCCATCACCTCCCCTGCATAACTCTGCCAGGT
CAAACAGCATGTAATCGGGGAGAAACCCTCCGTAACGCTGTGGTGGTGTC
GTTTTTATTTTTCTACCAAAAAAGGTCCGCGATTCCATGCGCACCAAGAT
TCGCTTTCGTTTTTCTCATCAAAGAGCATCGAACGGATGCGGCGTAAAAC
GTCCACACTTTTGCACGCCCTCGACGTTTATGGTCTCTTCCTGGGAGAAA
TGAAGAGACATACCAGTAACTCATAAGGCGCGCGCGGGTCAATCTAACAA
CACTAAATGTACCTGCACCCTTGTAATGTACCTGCAACATAACTGCTGTC
GGCGCCACCACTCGCCAATAAAAAGGCCGACTACATCGCATGATCGGGCA
CCCCTGTTTTCACCCCAACGGGGACAAACCCCGGAAAAAAATAAAATTAC
TGCACACGCCAGACACCGAACGAATAAAACGCAATCGAGCATCCTCCCTC
AAGGTCACACATACGCTCGTGTGAGTAGTCGCAACGCTCTCTACGATGTT
GGCTATGCAGCATCACCGAACGCAAAAAAAAAAAACTACACACCAGTGCG
CACCGACGCTCACACGCTAGAACTACCTAAGCAATGCGGCTTGGCAGCTA
AAAAATGCGTTTTTCTTCGCGCGGGGGAGAGGCCCCAGAGCGGCAAGAAA
ACGGCAAACTGGCCAATCGTTTCTGGTTTATTTGCTGCATCGAGAAGACA
ACAAGTACATGGTGCCCTCCACAACCCGAATCCTCCTGCTGTATGGGTGT
CCACCCGGACGCTTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1161:10126..10992+

>mRNA_L-elsbetiae_contig1161.1395.1 ID=mRNA_L-elsbetiae_contig1161.1395.1|Name=mRNA_L-elsbetiae_contig1161.1395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig1161:10126..10992+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTGCAACATAACTGCTGTCGGCGCCACCACTCGCCAATAAAAAG
GCCGACTACATCGCATGATCGGGCACCCCTGTTTTCACCCCAACGGGGAC
AAACCCCGGAAAAAAATAAAATTACTGCACACGCCAGACACCGAACGAAT
AAAACGCAATCGAGCATCCTCCCTCAAGGTCACACATACGCTCGTGTGAG
TAGTCGCAACGCTCTCTACGATGTTGGCTATGCAGCATCACCGAACGCAA
AAAAAAAAAACTACACACCAGTGCGCACCGACGCTCACACGCTAGAACTA
CCTAAGCAATGCGGCTTGGCAGCTAAAAAATGCGTTTTTCTTCGCGCGGG
GGAGAGGCCCCAGAGCGGCAAGAAAACGGCAAACTGGCCAATCGTTTCTG
GTTTATTTGCTGCATCGAGAAGACAACAAGTACATGGTGCCCTCCACAAC
CCGAATCCTCCTGCTGTATGGGTGTCCACCCGGACGCTTGTGATGTACCT
GCAACATAACTGCTGTCGGCGCCACCACTCGCCAATAAAAAGGCCGACTA
CATCGCATGATCGGGCACCCCTGTTTTCACCCCAACGGGGACAAACCCCG
GAAAAAAATAAAATTACTGCACACGCCAGACACCGAACGAATAAAACGCA
ATCGAGCATCCTCCCTCAAGGTCACACATACGCTCGTGTGAGTAGTCGCA
ACGCTCTCTACGATGTTGGCTATGCAGCATCACCGAACGCAAAAAAAAAA
AACTACACACCAGTGCGCACCGACGCTCACACGCTAGAACTACCTAAGCA
ATGCGGCTTGGCAGCTAAAAAATGCGTTTTTCTTCGCGCGGGGGAGAGGC
CCCAGAGCGGCAAGAAAACGGCAAACTGGCCAATCGTTTCTGGTTTATTT
GCTGCATCGAGAAGACAACAAGTACATGGTGCCCTCCACAACCCGAATCC
TCCTGCTGTATGGGTGTCCACCCGGACGCTTGTG
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