mRNA_L-elsbetiae_contig1161.1394.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1161.1394.1
Unique NamemRNA_L-elsbetiae_contig1161.1394.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1161.1394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1161contigL-elsbetiae_contig1161:7197..9252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_004120.1
Exons2
Model size1842
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1161.1394.1prot_L-elsbetiae_contig1161.1394.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1161 8153..8930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.8569536-UTR-L-elsbetiae_contig1161:7196..81521622815364.8569536-UTR-L-elsbetiae_contig1161:7196..8152Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1161 7197..8152 -
1691682862.5979245-UTR-L-elsbetiae_contig1161:7196..81521691682862.5979245-UTR-L-elsbetiae_contig1161:7196..8152Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1161 7197..8152 -
1622815364.8847668-UTR-L-elsbetiae_contig1161:8930..92521622815364.8847668-UTR-L-elsbetiae_contig1161:8930..9252Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1161 8931..9252 -
1691682862.6232429-UTR-L-elsbetiae_contig1161:8930..92521691682862.6232429-UTR-L-elsbetiae_contig1161:8930..9252Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1161 8931..9252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.8667443-CDS-L-elsbetiae_contig1161:8152..84671622815364.8667443-CDS-L-elsbetiae_contig1161:8152..8467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1161 8153..8467 -
1691682862.6069305-CDS-L-elsbetiae_contig1161:8152..84671691682862.6069305-CDS-L-elsbetiae_contig1161:8152..8467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1161 8153..8467 -
1622815364.8757708-CDS-L-elsbetiae_contig1161:8681..89301622815364.8757708-CDS-L-elsbetiae_contig1161:8681..8930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1161 8682..8930 -
1691682862.6151085-CDS-L-elsbetiae_contig1161:8681..89301691682862.6151085-CDS-L-elsbetiae_contig1161:8681..8930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1161 8682..8930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1161.1394.1

>prot_L-elsbetiae_contig1161.1394.1 ID=prot_L-elsbetiae_contig1161.1394.1|Name=mRNA_L-elsbetiae_contig1161.1394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MGPCNRHEDAAIAERADKAWGELEHPSTENAMHTRKNAPERPPPAVPPPA
VEWGDLVTSLRTLHLGRQQVQACATAGRRPRPKPVRSRSDQSFDHNTMGK
RAHNAGASSNVSRIPRHPSDDSSSGGDSDDEDSAGLGEPPLLPPTLKRAK
RACSFSPTSSARWNNSTTNNAVWDFSEKKKLPNTPRQ*
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mRNA from alignment at L-elsbetiae_contig1161:7197..9252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1161.1394.1 ID=mRNA_L-elsbetiae_contig1161.1394.1|Name=mRNA_L-elsbetiae_contig1161.1394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2056bp|location=Sequence derived from alignment at L-elsbetiae_contig1161:7197..9252- (Laminarionema elsbetiae ELsaHSoW15)
GTACGTATTCCCACTTGAACACGTAGCGAAACACGTCCTTCTTGTGATCG
TGGTGTCTCTGCTTCAGGTTTTCTTTTCAGGTTTGCTTGGCGGTACGCCC
GGACGGTACACCATTAGTCCGTAAAAAAAAAAAAGAACAATCGAATCGAG
AGAGTTCGACCGCGAAGAAAATTCTAAAAATTCTCGGGGTGAAACTTTTT
CGGGGGTGTTCGGTTTTAACCCGTGCCGACACTGTGCTGACCCGCCACCA
CACACGCTCACAAACGCGCACGCCCTCGCAGCCAGCAACGTTGTGGACCT
TGCCGACGACAAGCACGCAAGGATGGGCCCCTGTAACAGACACGAGGACG
CGGCTATCGCGGAACGAGCCGACAAAGCATGGGGCGAGCTGGAACATCCA
AGCACAGAAAACGCGATGCACACGAGGAAAAATGCCCCCGAACGGCCTCC
GCCTGCTGTACCACCTCCGGCGGTTGAGTGGGGGGATCTCGTGACCAGCC
TGAGGACTCTCCATCTGGGGCGACAGCAGGTGCAGGCTTGCGCTACGGCT
GGAAGACGACCTCGGCCTAAGGTATGCAGGGCAAATGACTCGAGCGATTT
CGCACAGAATGATGTATCATTATGCATTCACGGGGTGTTGACGTAATCTG
TATTGACTGCACACAGTGCGGCCACAGTGTGTAAGCACATGAGCACCCGC
ATATTTGCGTGTTCCGATCGACGTTTCCATTCATAATTGAGTGTTCTCTC
TGCCGTTCTCTCCTTGCCGTCCGTCCTCCGTACAGCCCGTTCGCAGCAGG
AGTGATCAATCCTTTGACCACAACACCATGGGGAAGCGGGCTCACAACGC
GGGTGCTTCTTCAAACGTTTCAAGGATTCCTCGCCACCCGAGCGACGATA
GCAGTAGCGGCGGCGACAGTGATGACGAAGACTCTGCAGGACTAGGGGAA
CCTCCGCTTCTCCCGCCTACGTTAAAAAGGGCAAAAAGGGCTTGCTCTTT
CTCTCCGACGTCGTCGGCCAGGTGGAACAACAGCACAACAAACAACGCCG
TATGGGATTTTTCTGAAAAAAAAAAACTGCCCAATACTCCGAGACAGTAG
TAACAAAAAAATATTGAGAGCTCGGAGTGAACCTCACCATATTGGGTAGG
TTTTAGATCGCAGGGCTTTGGTTACGTGCTAGATTGGAGGGCAAGGGGTA
AGGCTGGGCCGGCTGCGCGCGCCAGGTGCATACGCGCGCACTTTTCACAG
TCCCGCCACACGTCACAGAACCCTCAGGATATTCCTAGAACTCGCTCTAT
CTAAAGTGGAGGCTAGAGGCTAGGGTGTCTGCCAGGTGTCTACATCTAGG
TTAGGTCAGGTGTCTAGTGGAGGGTAGGTGTCTTAACTTTCTTCGGTTGT
CGCGGGGTAACATGGACGGTGGTTTCTGCGCATCTGCTTCTTGGAGCAGA
CGGATACCTGTCATATTTATGTACCAGTAGATGCGATTTTTTTATCATTT
TCAAATGTAAACTAAGTGGGGGGTTATCGTGAGTGCGGGCGAAGGCATGG
AAAAGGCACCCCACTATTTATTGTTACACCGAAGACCGTGCTTGATTTTT
CAGCTGGTGTAAGTGCACTTGTAGGTAAATATCGTTTGCTGGATACGTGA
CGTCCATTCTCAGTGTTCGATCTCACCGTTAACCCACAGGGCGTGTGTGT
TTGATGAGGAGAACTGGCCGCTGTCTGAACTTGAGACTGACACCACGAAT
GTTAATGTTCACATCGTAAGTATTTATTTACTAGACGTAGCGTCGGTTTA
CTTATTATTTTCGAAAAATAGGGTAATAATGATATGGTGTGTCGTAGAAT
AGGGTACATATCTACTATTCTTCTGGTGTTGTCGGAGAATGGGTGGGATA
ATATTATGGTGTCGTATCGTCTTACGTATGTCCAGCACCACTGCTGTTTG
ATTCAGGAAGTAACATGATGCCCGGGCGAGGGGACGCATACTAGGCGCGC
TCGAATTGTGTTCCCAGGAGGAGCAGATACGAGCAAAAATGTGTATGATA
CGTAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1161:7197..9252-

>mRNA_L-elsbetiae_contig1161.1394.1 ID=mRNA_L-elsbetiae_contig1161.1394.1|Name=mRNA_L-elsbetiae_contig1161.1394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig1161:7197..9252- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCCCTGTAACAGACACGAGGACGCGGCTATCGCGGAACGAGCCGA
CAAAGCATGGGGCGAGCTGGAACATCCAAGCACAGAAAACGCGATGCACA
CGAGGAAAAATGCCCCCGAACGGCCTCCGCCTGCTGTACCACCTCCGGCG
GTTGAGTGGGGGGATCTCGTGACCAGCCTGAGGACTCTCCATCTGGGGCG
ACAGCAGGTGCAGGCTTGCGCTACGGCTGGAAGACGACCTCGGCCTAAGA
TGGGCCCCTGTAACAGACACGAGGACGCGGCTATCGCGGAACGAGCCGAC
AAAGCATGGGGCGAGCTGGAACATCCAAGCACAGAAAACGCGATGCACAC
GAGGAAAAATGCCCCCGAACGGCCTCCGCCTGCTGTACCACCTCCGGCGG
TTGAGTGGGGGGATCTCGTGACCAGCCTGAGGACTCTCCATCTGGGGCGA
CAGCAGGTGCAGGCTTGCGCTACGGCTGGAAGACGACCTCGGCCTAAGCC
CGTTCGCAGCAGGAGTGATCAATCCTTTGACCACAACACCATGGGGAAGC
GGGCTCACAACGCGGGTGCTTCTTCAAACGTTTCAAGGATTCCTCGCCAC
CCGAGCGACGATAGCAGTAGCGGCGGCGACAGTGATGACGAAGACTCTGC
AGGACTAGGGGAACCTCCGCTTCTCCCGCCTACGTTAAAAAGGGCAAAAA
GGGCTTGCTCTTTCTCTCCGACGTCGTCGGCCAGGTGGAACAACAGCACA
ACAAACAACGCCGTATGGGATTTTTCTGAAAAAAAAAAACTGCCCAATAC
TCCGAGACAGTAGCCCGTTCGCAGCAGGAGTGATCAATCCTTTGACCACA
ACACCATGGGGAAGCGGGCTCACAACGCGGGTGCTTCTTCAAACGTTTCA
AGGATTCCTCGCCACCCGAGCGACGATAGCAGTAGCGGCGGCGACAGTGA
TGACGAAGACTCTGCAGGACTAGGGGAACCTCCGCTTCTCCCGCCTACGT
TAAAAAGGGCAAAAAGGGCTTGCTCTTTCTCTCCGACGTCGTCGGCCAGG
TGGAACAACAGCACAACAAACAACGCCGTATGGGATTTTTCTGAAAAAAA
AAAACTGCCCAATACTCCGAGACAGTAG
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