mRNA_L-elsbetiae_contig11606.1391.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11606.1391.1
Unique NamemRNA_L-elsbetiae_contig11606.1391.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11606.1391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11606contigL-elsbetiae_contig11606:2333..2918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11606.1391.1prot_L-elsbetiae_contig11606.1391.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11606 2364..2885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.5778475-UTR-L-elsbetiae_contig11606:2332..23631622815364.5778475-UTR-L-elsbetiae_contig11606:2332..2363Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11606 2333..2363 +
1691682862.4231167-UTR-L-elsbetiae_contig11606:2332..23631691682862.4231167-UTR-L-elsbetiae_contig11606:2332..2363Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11606 2333..2363 +
1622815364.5960076-UTR-L-elsbetiae_contig11606:2885..29181622815364.5960076-UTR-L-elsbetiae_contig11606:2885..2918Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11606 2886..2918 +
1691682862.4487603-UTR-L-elsbetiae_contig11606:2885..29181691682862.4487603-UTR-L-elsbetiae_contig11606:2885..2918Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11606 2886..2918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.5864084-CDS-L-elsbetiae_contig11606:2363..28851622815364.5864084-CDS-L-elsbetiae_contig11606:2363..2885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11606 2364..2885 +
1691682862.4343412-CDS-L-elsbetiae_contig11606:2363..28851691682862.4343412-CDS-L-elsbetiae_contig11606:2363..2885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11606 2364..2885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11606.1391.1

>prot_L-elsbetiae_contig11606.1391.1 ID=prot_L-elsbetiae_contig11606.1391.1|Name=mRNA_L-elsbetiae_contig11606.1391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MVEFAVVPEAIGDRLELADEVCHDLATAADMAAVMPSLMTILNTRRNVAK
WTANVRATATTPPGTGGAKAVMSMTPQERMGCMPTLGFAAARVRLSKSPL
SMGTDVNVLPRTTHQQLWPVMSQTFESCCWVALARLALAEATAAWGHATC
WKSRGGIYPTWPPAWCYCGCCCC*
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mRNA from alignment at L-elsbetiae_contig11606:2333..2918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11606.1391.1 ID=mRNA_L-elsbetiae_contig11606.1391.1|Name=mRNA_L-elsbetiae_contig11606.1391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=586bp|location=Sequence derived from alignment at L-elsbetiae_contig11606:2333..2918+ (Laminarionema elsbetiae ELsaHSoW15)
AGACGTCCAGCTCCCGTCGGACGAACTCTGCATGGTGGAGTTTGCAGTAG
TCCCGGAGGCCATCGGAGACCGACTGGAGCTCGCTGATGAGGTATGCCAC
GACCTGGCGACCGCTGCGGATATGGCGGCAGTCATGCCGTCGTTGATGAC
GATTTTGAACACGCGCAGAAATGTCGCGAAGTGGACCGCGAACGTCCGCG
CCACCGCCACCACTCCCCCTGGTACCGGCGGCGCAAAGGCCGTGATGTCG
ATGACCCCCCAGGAGAGGATGGGGTGCATGCCGACGTTGGGGTTCGCGGC
CGCCCGGGTGAGGTTGTCGAAATCTCCGCTATCCATGGGGACGGACGTGA
ATGTGCTGCCGCGTACAACGCACCAGCAGCTTTGGCCAGTCATGAGCCAG
ACCTTCGAGTCTTGCTGCTGGGTCGCCTTGGCGAGGTTGGCGTTGGCCGA
AGCCACGGCCGCTTGGGGCCATGCCACCTGCTGGAAATCGCGCGGGGGCA
TATATCCCACCTGGCCTCCCGCCTGGTGCTACTGTGGCTGCTGCTGCTGC
TGAAGCTGCTGCTGCGGCTGCTGCTGGACCGGCTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11606:2333..2918+

>mRNA_L-elsbetiae_contig11606.1391.1 ID=mRNA_L-elsbetiae_contig11606.1391.1|Name=mRNA_L-elsbetiae_contig11606.1391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig11606:2333..2918+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAGTTTGCAGTAGTCCCGGAGGCCATCGGAGACCGACTGGAGCT
CGCTGATGAGGTATGCCACGACCTGGCGACCGCTGCGGATATGGCGGCAG
TCATGCCGTCGTTGATGACGATTTTGAACACGCGCAGAAATGTCGCGAAG
TGGACCGCGAACGTCCGCGCCACCGCCACCACTCCCCCTGGTACCGGCGG
CGCAAAGGCCGTGATGTCGATGACCCCCCAGGAGAGGATGGGGTGCATGC
CGACGTTGGGGTTCGCGGCCGCCCGGGTGAGGTTGTCGAAATCTCCGCTA
TCCATGGGGACGGACGTGAATGTGCTGCCGCGTACAACGCACCAGCAGCT
TTGGCCAGTCATGAGCCAGACCTTCGAGTCTTGCTGCTGGGTCGCCTTGG
CGAGGTTGGCGTTGGCCGAAGCCACGGCCGCTTGGGGCCATGCCACCTGC
TGGAAATCGCGCGGGGGCATATATCCCACCTGGCCTCCCGCCTGGTGCTA
CTGTGGCTGCTGCTGCTGCTGAATGGTGGAGTTTGCAGTAGTCCCGGAGG
CCATCGGAGACCGACTGGAGCTCGCTGATGAGGTATGCCACGACCTGGCG
ACCGCTGCGGATATGGCGGCAGTCATGCCGTCGTTGATGACGATTTTGAA
CACGCGCAGAAATGTCGCGAAGTGGACCGCGAACGTCCGCGCCACCGCCA
CCACTCCCCCTGGTACCGGCGGCGCAAAGGCCGTGATGTCGATGACCCCC
CAGGAGAGGATGGGGTGCATGCCGACGTTGGGGTTCGCGGCCGCCCGGGT
GAGGTTGTCGAAATCTCCGCTATCCATGGGGACGGACGTGAATGTGCTGC
CGCGTACAACGCACCAGCAGCTTTGGCCAGTCATGAGCCAGACCTTCGAG
TCTTGCTGCTGGGTCGCCTTGGCGAGGTTGGCGTTGGCCGAAGCCACGGC
CGCTTGGGGCCATGCCACCTGCTGGAAATCGCGCGGGGGCATATATCCCA
CCTGGCCTCCCGCCTGGTGCTACTGTGGCTGCTGCTGCTGCTGA
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