mRNA_L-elsbetiae_contig11605.1390.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11605.1390.1
Unique NamemRNA_L-elsbetiae_contig11605.1390.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11605.1390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11605contigL-elsbetiae_contig11605:2..2154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size829
Cds size828
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11605.1390.1prot_L-elsbetiae_contig11605.1390.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11605 3..2154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.5224226-CDS-L-elsbetiae_contig11605:2..1901622815364.5224226-CDS-L-elsbetiae_contig11605:2..190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 3..190 -
1691682862.3841975-CDS-L-elsbetiae_contig11605:2..1901691682862.3841975-CDS-L-elsbetiae_contig11605:2..190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 3..190 -
1622815364.5327258-CDS-L-elsbetiae_contig11605:446..7071622815364.5327258-CDS-L-elsbetiae_contig11605:446..707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 447..707 -
1691682862.393351-CDS-L-elsbetiae_contig11605:446..7071691682862.393351-CDS-L-elsbetiae_contig11605:446..707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 447..707 -
1622815364.5419014-CDS-L-elsbetiae_contig11605:1501..17381622815364.5419014-CDS-L-elsbetiae_contig11605:1501..1738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 1502..1738 -
1691682862.4039915-CDS-L-elsbetiae_contig11605:1501..17381691682862.4039915-CDS-L-elsbetiae_contig11605:1501..1738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 1502..1738 -
1622815364.5512333-CDS-L-elsbetiae_contig11605:2012..21541622815364.5512333-CDS-L-elsbetiae_contig11605:2012..2154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 2013..2154 -
1691682862.4132345-CDS-L-elsbetiae_contig11605:2012..21541691682862.4132345-CDS-L-elsbetiae_contig11605:2012..2154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11605 2013..2154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11605.1390.1

>prot_L-elsbetiae_contig11605.1390.1 ID=prot_L-elsbetiae_contig11605.1390.1|Name=mRNA_L-elsbetiae_contig11605.1390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
DVDVVCGSYVDADTGASLCDDGSTAVMDTSTSCGTDGICSQSECCVDGES
PAPTPAPTAPSTAPVMQPTAPTAPVAGPVAEPAAPTADSSDSSDSGDAPV
ESPVPAPVAEPTAPTADSSNSSDSGDAPVASPVAGPVAEPTAPTVDSSDS
SDSGDARVAAPAAAPVAEPTAPTADSSDRSDSGDAPVASPVPAPVAEPTA
LTTDSSDSSDSRDAPVASPVAAPVAEPTAPTAESSDSSDSSDAPVAAPAA
APVAEPTAPTADSSDSSDSGDAPVAS
back to top

mRNA from alignment at L-elsbetiae_contig11605:2..2154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11605.1390.1 ID=mRNA_L-elsbetiae_contig11605.1390.1|Name=mRNA_L-elsbetiae_contig11605.1390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2153bp|location=Sequence derived from alignment at L-elsbetiae_contig11605:2..2154- (Laminarionema elsbetiae ELsaHSoW15)
GACGTGGACGTGGTCTGCGGCTCCTACGTGGATGCGGACACCGGCGCCAG
CCTGTGCGATGACGGGTCGACCGCTGTGATGGATACTTCCACCTCGTGCG
GCACCGACGGCATTTGCTCGCAGTCGGAGTGCTGCGTGGATGGTGAGAGA
CGGGATTGGTCATTGCGGTGTAGCTGCTGGCCGTCTCAGAGGTACCGAGG
CACTGGTCAGGCGAGGTTGCTTTAACCACGCTTGCACCAGTGCAACGCCA
ATGTACTATCGAAGCACGGCAGCGGCATCTAGTCGATTGCTTTGATCGAT
AGCAGAGCTTGGCTTTCTACCCCCGGCCAGTACTTGATGGAGGTAGGTGG
GGGTGTCGTATTCAACCATGTGTCCCTCTCTCCCTCCCCGATGTATTATC
TGTTGCCGTTGTGCAGGCGAGTCCCCTGCACCTACACCGGCCCCCACGGC
GCCGTCGACCGCTCCTGTGATGCAGCCTACTGCACCCACGGCACCGGTGG
CCGGCCCTGTGGCCGAACCGGCCGCACCCACCGCCGACAGCAGCGACAGC
AGCGACTCCGGCGATGCCCCTGTCGAGTCCCCCGTCCCAGCACCGGTCGC
CGAACCTACCGCACCCACCGCCGACAGCAGCAACAGCAGTGACAGCGGCG
ACGGTAAGAAGATGGTAAACACACGTGTTGCTCCACACACCAAAATTCTT
AAGTTTTGTTTTTTCCTCCAATAATGGTTTCCAGGAACCGCTCCGATCTC
TGTTACACGTAGGATTTGCCATTGGAACTGGAATAACCCTTCCTTTAGCG
TTGATCCCCGAATCGGACCAAGTCAGACCGTCTCTCCAGAACTTCTAGAG
GGAGGCTGCGAAAACAGAGTTGGGTTTAGTGCCCTCTTCGGACAGGCTAT
CAGCGCTGAAATTCCAAACTTGACTCGGGTCAGGTGGGATGTTGAGGCAT
TTTTGCAATGCGAGGTTCTCGCTGCTTGAGGGAGGAGGCATTTTTGCGAT
GCGAGGTTCTCGCTGCTTGCAACACGCCATGTTTTCAATCGTCGTCCCCT
AAACGGACTAAGAACTTTGCATTCTATGCTTGTTCATCTGTGCCGTGGCC
AAGTTTGCGGTGATTTGGTTAACTCCTGCTGAAGGCGCAAGCGCTTGAAG
CTTCCAGTTTGGAGCTGAAAAAGACGCCCAAAAGAAACCGCCACCGGGTT
TGTCGCACCATCGGTCTCACAGCATTTCTCTATGTGGTCGTAAACCTACG
ACATAACGACGTAGATGACGACCTAGTTGAGGCCCTCTCAACATTTCATG
CAAGCCGTTGTCTATGCGGCGAGCACCAGCGTTGATTGAGGTCGTGCCCA
ATCACATCGGAGCTTCTGCCGCTGACGGCTGTCCTAACCCTAACGATCAG
TAATGCTCTGTCGATTCTCCTCTGTGTTGTATCTGCTCCTGCCGCAGCCC
CAGTTGCGTCCCCCGTCGCCGGCCCTGTAGCCGAACCTACCGCCCCCACC
GTCGACAGCAGCGATAGCAGCGACTCCGGCGATGCGCGGGTAGCCGCCCC
CGCTGCAGCACCGGTCGCTGAACCTACCGCACCCACCGCCGACAGCAGCG
ACAGAAGCGACTCCGGAGATGCCCCTGTCGCGTCCCCCGTCCCAGCGCCG
GTGGCCGAACCTACCGCACTCACCACCGACAGCAGCGACAGCAGTGACAG
CCGCGACGGTAAGAAGATGGCAGATGGTAGATGGTCCCGCGTCCCTCGTG
ATTCATACACGAGATAGAAGGTTGGTTCCATTCCCTCCTGTGATGATGGC
TGATGGCTTTCGGCTCCGAGACCCCAGCATTGGCACAACCTCGCCGAATG
TCCCCAAGAGGGAGCTCAACCATATCAGAGCTTTTACCGCTGACAGTGCA
CTAACCCTAACTATCGGTAATGCTCTGTCGACTCTCCTCTGTGTTGTATC
TACTCCTGCCGCAGCCCCTGTCGCGTCCCCCGTCGCCGCGCCGGTGGCCG
AACCTACCGCCCCCACCGCCGAAAGCAGCGATAGCAGCGACTCCAGCGAT
GCGCCGGTAGCCGCCCCCGCTGCAGCACCGGTCGCCGAACCTACCGCACC
CACCGCCGACAGCAGCGACAGCAGCGACTCCGGAGATGCCCCTGTCGCGT
CCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11605:2..2154-

>mRNA_L-elsbetiae_contig11605.1390.1 ID=mRNA_L-elsbetiae_contig11605.1390.1|Name=mRNA_L-elsbetiae_contig11605.1390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig11605:2..2154- (Laminarionema elsbetiae ELsaHSoW15)
GACGTGGACGTGGTCTGCGGCTCCTACGTGGATGCGGACACCGGCGCCAG
CCTGTGCGATGACGGGTCGACCGCTGTGATGGATACTTCCACCTCGTGCG
GCACCGACGGCATTTGCTCGCAGTCGGAGTGCTGCGTGGATGGACGTGGA
CGTGGTCTGCGGCTCCTACGTGGATGCGGACACCGGCGCCAGCCTGTGCG
ATGACGGGTCGACCGCTGTGATGGATACTTCCACCTCGTGCGGCACCGAC
GGCATTTGCTCGCAGTCGGAGTGCTGCGTGGATGGCGAGTCCCCTGCACC
TACACCGGCCCCCACGGCGCCGTCGACCGCTCCTGTGATGCAGCCTACTG
CACCCACGGCACCGGTGGCCGGCCCTGTGGCCGAACCGGCCGCACCCACC
GCCGACAGCAGCGACAGCAGCGACTCCGGCGATGCCCCTGTCGAGTCCCC
CGTCCCAGCACCGGTCGCCGAACCTACCGCACCCACCGCCGACAGCAGCA
ACAGCAGTGACAGCGGCGACGGCGAGTCCCCTGCACCTACACCGGCCCCC
ACGGCGCCGTCGACCGCTCCTGTGATGCAGCCTACTGCACCCACGGCACC
GGTGGCCGGCCCTGTGGCCGAACCGGCCGCACCCACCGCCGACAGCAGCG
ACAGCAGCGACTCCGGCGATGCCCCTGTCGAGTCCCCCGTCCCAGCACCG
GTCGCCGAACCTACCGCACCCACCGCCGACAGCAGCAACAGCAGTGACAG
CGGCGACGCCCCAGTTGCGTCCCCCGTCGCCGGCCCTGTAGCCGAACCTA
CCGCCCCCACCGTCGACAGCAGCGATAGCAGCGACTCCGGCGATGCGCGG
GTAGCCGCCCCCGCTGCAGCACCGGTCGCTGAACCTACCGCACCCACCGC
CGACAGCAGCGACAGAAGCGACTCCGGAGATGCCCCTGTCGCGTCCCCCG
TCCCAGCGCCGGTGGCCGAACCTACCGCACTCACCACCGACAGCAGCGAC
AGCAGTGACAGCCGCGACGCCCCAGTTGCGTCCCCCGTCGCCGGCCCTGT
AGCCGAACCTACCGCCCCCACCGTCGACAGCAGCGATAGCAGCGACTCCG
GCGATGCGCGGGTAGCCGCCCCCGCTGCAGCACCGGTCGCTGAACCTACC
GCACCCACCGCCGACAGCAGCGACAGAAGCGACTCCGGAGATGCCCCTGT
CGCGTCCCCCGTCCCAGCGCCGGTGGCCGAACCTACCGCACTCACCACCG
ACAGCAGCGACAGCAGTGACAGCCGCGACGCCCCTGTCGCGTCCCCCGTC
GCCGCGCCGGTGGCCGAACCTACCGCCCCCACCGCCGAAAGCAGCGATAG
CAGCGACTCCAGCGATGCGCCGGTAGCCGCCCCCGCTGCAGCACCGGTCG
CCGAACCTACCGCACCCACCGCCGACAGCAGCGACAGCAGCGACTCCGGA
GATGCCCCTGTCGCGTCCCCCCTGTCGCGTCCCCCGTCGCCGCGCCGGTG
GCCGAACCTACCGCCCCCACCGCCGAAAGCAGCGATAGCAGCGACTCCAG
CGATGCGCCGGTAGCCGCCCCCGCTGCAGCACCGGTCGCCGAACCTACCG
CACCCACCGCCGACAGCAGCGACAGCAGCGACTCCGGAGATGCCCCTGTC
GCGTCC
back to top