mRNA_L-elsbetiae_contig11604.1389.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11604.1389.1
Unique NamemRNA_L-elsbetiae_contig11604.1389.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11604.1389.1 vs. uniprot
Match: A0A6H5LDD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDD2_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 6.110e-46
Identity = 114/208 (54.81%), Postives = 130/208 (62.50%), Query Frame = 1 
Query:    1 MLRTWNAENVNHLGPSQRG--GGKSFKALGDAGQGSENPPXXXXXXXXXXXXXXRKLKPLGSYSENAPPSAAKVKGKAGGLGLGLPTSSSKPQQKQRRALGDISNAGKLSAGAAGGTASGNAAPFKLSGKQP--TPGLSFAVHSDSSKAAG--TTKARGSSSRAAAAAAKGRSALRPDDHVDDVEVVLGRMGEEEEVLVERKAEQRAA 606
            ML  WNAEN+N +GPSQRG  GGKSFK LGDAG  SENPP              RKLKPLGSYSENAPPSAAK K                 +++ RRALGDISNAG      A      N AP KLSGKQP   PGL F VHSDS+KAA     + RG+ SR  A+ + GRS L  +  VDD+E+ LGR G+EEEVLVER+AE+RAA
Sbjct:    1 MLSKWNAENINQVGPSQRGLGGGKSFKPLGDAGS-SENPPSASGKGILQ-----RKLKPLGSYSENAPPSAAKGKAAGXXXXXXXXXXXXXAKKQPRRALGDISNAGNAPPPVAT-----NNAPSKLSGKQPLLAPGLKFTVHSDSNKAAAGRAVRPRGAGSRVVASGS-GRSVLGSNGRVDDIELPLGRTGDEEEVLVERRAEERAA 196
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BLAST of mRNA_L-elsbetiae_contig11604.1389.1 vs. uniprot
Match: D7FJ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ54_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.590e-29
Identity = 96/207 (46.38%), Postives = 112/207 (54.11%), Query Frame = 1 
Query:    1 MLRTWNAENVNHLGPSQRG--GGKSFKALGDAGQGSENPPXXXXXXXXXXXXXXRKLKPLGSYSENAPPSAAKVKGKAGGLGLGLPTSSSKPQQKQRRALGDISNAGKLSAGAAGGTASGNAAPFKLSGKQP--TPGLSFAVHSDSSKAAG-TTKARGSSSRAAAAAAKGRSALRPDDHVDDVEVVLGRMGEEEEVLVERKAEQRAA 606
            ML TWNAEN+N +GPSQRG  GGKSFK LGDAG  SENPP              RKLKPLGSYS              GG GLG                                    N AP KLSGKQ   TPGL F VHSDS+KAAG   + RG+ SR  A+ + G++ +  +  VDD+E+ LGR G+EEEVLVER+AE+RAA
Sbjct:    1 MLSTWNAENINQVGPSQRGLGGGKSFKPLGDAGS-SENPPSASGKGILQ-----RKLKPLGSYSXXXXXXXXXXXAAGGGRGLG-----GLXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNNAPSKLSGKQQLLTPGLKFTVHSDSNKAAGGAVRPRGAGSRVVASGS-GKNVVGSNGRVDDIELPLGRTGDEEEVLVERRAEERAA 195
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11604.1389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDD2_9PHAE6.110e-4654.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ54_ECTSI5.590e-2946.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11604contigL-elsbetiae_contig11604:939..4363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000160.1
Exons3
Model size897
Cds size897
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11604.1389.1prot_L-elsbetiae_contig11604.1389.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11604 939..4363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815364.459157-CDS-L-elsbetiae_contig11604:938..11941622815364.459157-CDS-L-elsbetiae_contig11604:938..1194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11604 939..1194 -
1691682862.3578765-CDS-L-elsbetiae_contig11604:938..11941691682862.3578765-CDS-L-elsbetiae_contig11604:938..1194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11604 939..1194 -
1622815364.4739027-CDS-L-elsbetiae_contig11604:2806..33561622815364.4739027-CDS-L-elsbetiae_contig11604:2806..3356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11604 2807..3356 -
1691682862.367896-CDS-L-elsbetiae_contig11604:2806..33561691682862.367896-CDS-L-elsbetiae_contig11604:2806..3356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11604 2807..3356 -
1622815364.485686-CDS-L-elsbetiae_contig11604:4272..43631622815364.485686-CDS-L-elsbetiae_contig11604:4272..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11604 4273..4363 -
1691682862.3754964-CDS-L-elsbetiae_contig11604:4272..43631691682862.3754964-CDS-L-elsbetiae_contig11604:4272..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11604 4273..4363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11604.1389.1

>prot_L-elsbetiae_contig11604.1389.1 ID=prot_L-elsbetiae_contig11604.1389.1|Name=mRNA_L-elsbetiae_contig11604.1389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
MLRTWNAENVNHLGPSQRGGGKSFKALGDAGQGSENPPPPAGKAIPQQQQ
QQRKLKPLGSYSENAPPSAAKVKGKAGGLGLGLPTSSSKPQQKQRRALGD
ISNAGKLSAGAAGGTASGNAAPFKLSGKQPTPGLSFAVHSDSSKAAGTTK
ARGSSSRAAAAAAKGRSALRPDDHVDDVEVVLGRMGEEEEVLVERKAEQR
AAAAAAAAALKHATSRSRSRSQSTSSAFAKPSASASTSTSTSKARFGRDI
TNTAAGAGAGAGAGAGTAAAACAVAACGAAALDKNLDSAIDRICFNDLE
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mRNA from alignment at L-elsbetiae_contig11604:939..4363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11604.1389.1 ID=mRNA_L-elsbetiae_contig11604.1389.1|Name=mRNA_L-elsbetiae_contig11604.1389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3425bp|location=Sequence derived from alignment at L-elsbetiae_contig11604:939..4363- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAGGACGTGGAACGCCGAGAACGTCAACCACTTGGGGCCATCGCA
GCGCGGCGGAGGCAAGAGTTTCAAGGCCCTAGGCGATGCAGGTACGAAAT
AACCACCACTGGAGAGTGTTCATGCGCGTGTCTTGGGTGCCGCGCGTGCG
GTGCTTCGTCTTTCTCTTTCCCCCCAGGCTCCGCGGAGAGACTCCACATG
AGGTCAGCCAGCAGCTGTGATGGGATAGCCCCGCACGCTGCGTAGGCAGT
GGACCGAGTCTAGTCTTTGAGTCGATTTTTTTGGAGAACACAGGCACGCT
CTCCGCACAGCAATGCTGCCGTTGTACGGTTGTTGTATCTACAGCAGTAT
GTATGTATCTATGTATGTTGTGTAGGTATGTGGGTTGTCTAAACCGTTCC
GATCTCTCCATCCAGTACCTCCCAATGTCCGTACATACTAATCCAACACT
TGATGCGGTCAATTCCCGTGGTCACAGGCTAGTTTATACCTAAGAAAAGG
TGCACGAAAAATATCGAATCTGGAGCCCTTCGCTCATGTATGTGTGCATA
TATTTATGCATAGTGGTAGTCTAATCTATTACGAAGTACATAATTGAAGT
AACTACACAGATAAATAGACATAGCTGTGTTCCCGAATAGCAGATATCAA
GGACGTGTGTGGATAGGCACTTCGACTCCCCAGCTTCCTCAGGCACACCC
CGCGCTTTGTACACACACACACTGATGCATCAACAACACAGCAACGGTGG
ATTATTTGGCTGTACATATCTGAACCCGTAGCCGTTATTCCGCCGGTAGA
CTACATTCCACCGACAGAGAGGCCAGCTGACACGGAGAACTTCACGACGC
CCATGAGCAACGACAGCAACCAGCAACAGAAATGCGAACCTTTGTGATAT
CCTATCCTTGCTGTGACGCTTAACGTAGGAAGGTAATAGCTCCTTGAACA
ACCTAAAGCACAACGCACAACACGCACAACGTTCGCTCCTTTTCGCCGCT
GGCACAGGGCAAGGATCAGAAAACCCGCCTCCGCCTGCCGGCAAAGCCAT
ACCCCAGCAGCAGCAGCAGCAGCGCAAGCTCAAGCCCCTGGGCAGCTACT
CCGAGAATGCTCCACCATCGGCGGCCAAAGTCAAGGGCAAGGCAGGCGGC
CTCGGCCTAGGCCTCCCCACCTCTTCGTCCAAGCCGCAGCAGAAGCAGCG
CCGCGCGCTGGGCGACATCTCCAACGCCGGGAAACTGTCGGCAGGGGCGG
CTGGGGGCACCGCCTCTGGCAACGCCGCCCCTTTCAAGCTCTCCGGCAAG
CAGCCCACCCCGGGGCTGTCGTTCGCCGTCCACAGCGATTCGAGCAAGGC
CGCTGGGACTACGAAGGCGAGAGGCAGCAGCTCCCGGGCCGCCGCCGCTG
CTGCCAAAGGAAGGAGCGCGCTTCGGCCGGACGACCATGTAGATGACGTG
GAGGTGGTGCTGGGGCGGATGGGCGAGGAGGAGGAGGTGCTCGTGGAGCG
GAAGGCGGAGCAGAGGGCGGCGGCGGCGGCGGCAGCAGCGGCGCTCAAGC
ACGCCACGTAAGTCGAGGTCGCCGCAGTGCAATTTGTACGTGGTATCTAT
AGAACACTACAAAAGCACAGCAGTATGTACTGCTGGTATGTATAATAGGC
ACGAACACCGGCAAATCAGCCTGTTGTGACAACCGAACCGGCCGGTCCGT
TGGCGCCCTGAGTCATTTGTTTGTTCGTTGCCCCGAGCCTATCTATTATC
TGAGGCATGTAAGAGGTTTGCTGAATTGGTTGCCGTGTCCAAAGCTGCTG
GTGGGGTGGTGATGTATATGTTTGATTCTATCTCTTGAATCTTTGCTGTT
AAATAATAGTGTACATCACCCGCTAGTACTGTAGCCGAAACAAACGGGAG
CCTTATTGTAGCGGGCCAAGAACAATGCAGACCATTTTTTATTTTGCGGA
ACCCCTCGCTGGGGGCTTCCCAAAGGGCAAATCGCCTGAAGGACGCAGCA
CGGACTACCGAGCATGGCGAACGATACAGGTCATAGAGCACACTCACGCA
AACACCCCCATACAAGCTCTGCTGCTGTACCGTGAGTGGCACAGCCGTGC
AGTTGATGGCGACGGCGGATATCTGTAAGGCTACATTTTTCTTCCTCGAA
GCCGAGTGATACCTATGTCTTCTCCGAACGTGTTGCGTGCTGTTGATCCC
AGCACCCCTCCACCTTCGTCTCTGCGACATTGTTGTCGTTGGTGCGGTTC
TGCACGTAGCTTGCCGACTGCCAAAGGAAAGCTTATAGTAACTAGGTTTG
AGAGGGCCGAATAGATAGATCGGTAGGTTTTGAACACGGTAGGATAGGTT
GGCAGGTTTTGGTTACATGTGTGCCTGCTGCGAGGCTTGCTGCGATTGCC
AGACCATTTCTATTTCCGCGAATCAAACCGGTGCCGCGAAAAAACCACGC
CAAGAAACCGCTTGTCGGCGTGGAGGCTGAAAACTCTCTGTGGTCGTGTG
TTCAATGCCCCGGACCGTATGATATCATGTGAGCTAACCCTACGTTGCGT
CATCGATCACGGTACCTTTGAGCCAAAAAAGCCAAGAGCTCTTATTTTCG
TTACCTGAAGAGTCTAACCCTGAGAATTATTTCGCACGGGCCTCTGCTGG
CTCTCATTCCTTATCTAGAGCTGAGTGCTAGCTGCTCCGTCTGTTCCCTT
GTACCTACGCAATGGGGCCACATAACTGCATGCCTACCTAACCCTTGCTT
GAAGCCGTATTTTTGTAATTGTAGCCTGGTGTAGTTTGTCCATGTCTCGA
AGTAGTATTGCCAATATCGCCGCGAATGCGTACATACGCTTGGTTCATAA
TCCTATCTGATGTGACCCTTGCGGCCTTTCTTCCTGCTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTACACGTTGTTACCTTGATGCGTATATTG
TATATGGGATGCACTCTAATCTCGCACCACCAACCCCCTTCCTTTCTACC
CCAGTATAGAAGCCGAAATCAAACCATTAGACGAGCCAGCGATGACGGGT
CTAATGGTTTGCTTTCGGCAGTCTCCCTCGCACGTTTTGTAACCTTTCCT
TCCCACGTATCACGACGTGAATGCCAACGCAACGCCACACGCCGTCCGTT
CAAGTCGATCAACATCAAGATCACGGTCGCGATCACGGTCACAATCGACA
TCGTCGGCCTTCGCGAAGCCCTCAGCGTCTGCCTCCACGTCTACCTCCAC
CTCCAAGGCGCGCTTCGGACGGGACATCACCAACACTGCCGCCGGTGCTG
GTGCTGGTGCTGGTGCTGGTGCTGGTACGGCTGCGGCCGCGTGCGCTGTC
GCCGCTTGTGGTGCTGCTGCATTGGACAAGAATCTGGACAGCGCTATCGA
CCGCATCTGTTTCAACGACTTGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11604:939..4363-

>mRNA_L-elsbetiae_contig11604.1389.1 ID=mRNA_L-elsbetiae_contig11604.1389.1|Name=mRNA_L-elsbetiae_contig11604.1389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig11604:939..4363- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGAGGACGTGGAACGCCGAGAACGTCAACCACTTGGGGCCATCGCA
GCGCGGCGGAGGCAAGAGTTTCAAGGCCCTAGGCGATGCAGATGTTGAGG
ACGTGGAACGCCGAGAACGTCAACCACTTGGGGCCATCGCAGCGCGGCGG
AGGCAAGAGTTTCAAGGCCCTAGGCGATGCAGGGCAAGGATCAGAAAACC
CGCCTCCGCCTGCCGGCAAAGCCATACCCCAGCAGCAGCAGCAGCAGCGC
AAGCTCAAGCCCCTGGGCAGCTACTCCGAGAATGCTCCACCATCGGCGGC
CAAAGTCAAGGGCAAGGCAGGCGGCCTCGGCCTAGGCCTCCCCACCTCTT
CGTCCAAGCCGCAGCAGAAGCAGCGCCGCGCGCTGGGCGACATCTCCAAC
GCCGGGAAACTGTCGGCAGGGGCGGCTGGGGGCACCGCCTCTGGCAACGC
CGCCCCTTTCAAGCTCTCCGGCAAGCAGCCCACCCCGGGGCTGTCGTTCG
CCGTCCACAGCGATTCGAGCAAGGCCGCTGGGACTACGAAGGCGAGAGGC
AGCAGCTCCCGGGCCGCCGCCGCTGCTGCCAAAGGAAGGAGCGCGCTTCG
GCCGGACGACCATGTAGATGACGTGGAGGTGGTGCTGGGGCGGATGGGCG
AGGAGGAGGAGGTGCTCGTGGAGCGGAAGGCGGAGCAGAGGGCGGCGGCG
GCGGCGGCAGCAGCGGCGCTCAAGCACGCCACGGCAAGGATCAGAAAACC
CGCCTCCGCCTGCCGGCAAAGCCATACCCCAGCAGCAGCAGCAGCAGCGC
AAGCTCAAGCCCCTGGGCAGCTACTCCGAGAATGCTCCACCATCGGCGGC
CAAAGTCAAGGGCAAGGCAGGCGGCCTCGGCCTAGGCCTCCCCACCTCTT
CGTCCAAGCCGCAGCAGAAGCAGCGCCGCGCGCTGGGCGACATCTCCAAC
GCCGGGAAACTGTCGGCAGGGGCGGCTGGGGGCACCGCCTCTGGCAACGC
CGCCCCTTTCAAGCTCTCCGGCAAGCAGCCCACCCCGGGGCTGTCGTTCG
CCGTCCACAGCGATTCGAGCAAGGCCGCTGGGACTACGAAGGCGAGAGGC
AGCAGCTCCCGGGCCGCCGCCGCTGCTGCCAAAGGAAGGAGCGCGCTTCG
GCCGGACGACCATGTAGATGACGTGGAGGTGGTGCTGGGGCGGATGGGCG
AGGAGGAGGAGGTGCTCGTGGAGCGGAAGGCGGAGCAGAGGGCGGCGGCG
GCGGCGGCAGCAGCGGCGCTCAAGCACGCCACATCACGGTCGCGATCACG
GTCACAATCGACATCGTCGGCCTTCGCGAAGCCCTCAGCGTCTGCCTCCA
CGTCTACCTCCACCTCCAAGGCGCGCTTCGGACGGGACATCACCAACACT
GCCGCCGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTACGGCTGCGGC
CGCGTGCGCTGTCGCCGCTTGTGGTGCTGCTGCATTGGACAAGAATCTGG
ACAGCGCTATCGACCGCATCTGTTTCAACGACTTGGAAATCACGGTCGCG
ATCACGGTCACAATCGACATCGTCGGCCTTCGCGAAGCCCTCAGCGTCTG
CCTCCACGTCTACCTCCACCTCCAAGGCGCGCTTCGGACGGGACATCACC
AACACTGCCGCCGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTACGGC
TGCGGCCGCGTGCGCTGTCGCCGCTTGTGGTGCTGCTGCATTGGACAAGA
ATCTGGACAGCGCTATCGACCGCATCTGTTTCAACGACTTGGAA
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